RNA–Protein interactions for RNA: YNR015W

SMM1, Transcript of Dihydrouridine synthase, yeast

Gene SMM1, Length 1,155 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMM1	YNR015W	SWI1	P09547	1314 aa		11.65	□□□□□ -0.54
SMM1	YNR015W	PFF1	P38244	976 aa		11.65	□□□□□ -0.54
SMM1	YNR015W	CWH41	P53008	833 aa		11.65	□□□□□ -0.54
SMM1	YNR015W	YRB30	P53107	440 aa	Predicted RBP	11.65	□□□□□ -0.54
SMM1	YNR015W	MRP7	P12687	371 aa		11.64	□□□□□ -0.55
SMM1	YNR015W	KIN4	Q01919	800 aa		11.64	□□□□□ -0.55
SMM1	YNR015W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	11.64	□□□□□ -0.55	not detected
SMM1	YNR015W	DIB1	Q06819	143 aa	Predicted RBP	11.64	□□□□□ -0.55
SMM1	YNR015W	BDF2	Q07442	638 aa		11.64	□□□□□ -0.55
SMM1	YNR015W	HAT1	Q12341	374 aa		11.64	□□□□□ -0.55
SMM1	YNR015W	RIM101	P33400	625 aa		11.63	□□□□□ -0.55
SMM1	YNR015W	MAK21	Q12176	1025 aa	Known RBP	11.63	□□□□□ -0.55
SMM1	YNR015W	NUP133	P36161	1157 aa		11.62	□□□□□ -0.55
SMM1	YNR015W	YGR122W	P53272	402 aa		11.62	□□□□□ -0.55
SMM1	YNR015W	SSK22	P25390	1331 aa	Predicted RBP	11.61	□□□□□ -0.55
SMM1	YNR015W	SMY1	P32364	656 aa	Known RBP	11.6	□□□□□ -0.55
SMM1	YNR015W	FCP1	Q03254	732 aa		11.6	□□□□□ -0.55
SMM1	YNR015W	PKH1	Q03407	766 aa		11.6	□□□□□ -0.55
SMM1	YNR015W	SIT4	P20604	311 aa		11.59	□□□□□ -0.55
SMM1	YNR015W	SET1	P38827	1080 aa	Known RBP	11.59	□□□□□ -0.55
SMM1	YNR015W	YER156C	P40093	338 aa	Known RBP	11.59	□□□□□ -0.55
SMM1	YNR015W	YPP1	P46951	817 aa		11.59	□□□□□ -0.55
SMM1	YNR015W	ERO1	Q03103	563 aa		11.59	□□□□□ -0.55
SMM1	YNR015W	IRC3	Q06683	689 aa		11.59	□□□□□ -0.55
SMM1	YNR015W	CAF20	P12962	161 aa	Known RBP	11.58	□□□□□ -0.56
SMM1	YNR015W	YIL092W	P40497	633 aa		11.58	□□□□□ -0.56
SMM1	YNR015W	RAD24	P32641	659 aa		11.57	□□□□□ -0.56
SMM1	YNR015W	SYF1	Q04048	859 aa	Predicted RBP	11.57	□□□□□ -0.56
SMM1	YNR015W	CSI1	Q04368	295 aa		11.57	□□□□□ -0.56
SMM1	YNR015W	NOP8	Q08287	484 aa	Predicted RBP	11.57	□□□□□ -0.56
SMM1	YNR015W	DAL5	P15365	543 aa		11.56	□□□□□ -0.56
SMM1	YNR015W	SWC3	P31376	625 aa		11.56	□□□□□ -0.56
SMM1	YNR015W	CDC27	P38042	758 aa		11.56	□□□□□ -0.56
SMM1	YNR015W	ITC1	P53125	1264 aa		11.56	□□□□□ -0.56
SMM1	YNR015W	UBP16	Q02863	499 aa		11.56	□□□□□ -0.56
SMM1	YNR015W	PMD1	P32634	1753 aa		11.54	□□□□□ -0.56
SMM1	YNR015W	RPS19A	P07280	144 aa	Known RBP	11.54	□□□□□ -0.56
SMM1	YNR015W	RPS19B	P07281	144 aa	Predicted RBP	11.54	□□□□□ -0.56
SMM1	YNR015W	FRD1	P32614	470 aa	Known RBP	11.53	□□□□□ -0.56
SMM1	YNR015W	UBP12	P39538	1254 aa		11.53	□□□□□ -0.56
SMM1	YNR015W	RAD2	P07276	1031 aa		11.52	□□□□□ -0.57
SMM1	YNR015W	PSH1	Q12161	406 aa		11.52	□□□□□ -0.57
SMM1	YNR015W	RPN1	P38764	993 aa	Known RBP	11.51	□□□□□ -0.57
SMM1	YNR015W	BOI2	P39969	1040 aa		11.51	□□□□□ -0.57
SMM1	YNR015W	ICL1	P28240	557 aa	Predicted RBP	11.5	□□□□□ -0.57
SMM1	YNR015W	FUN12	P39730	1002 aa	Known RBP	11.5	□□□□□ -0.57
SMM1	YNR015W	MTC5	Q03897	1148 aa		11.5	□□□□□ -0.57
SMM1	YNR015W	SAS4	Q04003	481 aa		11.5	□□□□□ -0.57
SMM1	YNR015W	YKU70	P32807	602 aa		11.49	□□□□□ -0.57
SMM1	YNR015W	HXT10	P43581	546 aa		11.49	□□□□□ -0.57
SMM1	YNR015W	SAC3	P46674	1301 aa		11.49	□□□□□ -0.57
SMM1	YNR015W	TRP5	P00931	707 aa	Known RBP	11.48	□□□□□ -0.57
SMM1	YNR015W	SQS1	P53866	767 aa	Known RBP	11.48	□□□□□ -0.57
SMM1	YNR015W	ICP55	P40051	511 aa		11.47	□□□□□ -0.57
SMM1	YNR015W	GRX6	Q12438	231 aa		11.47	□□□□□ -0.57
SMM1	YNR015W	SUP35	P05453	685 aa	Known RBP	11.46	□□□□□ -0.57
SMM1	YNR015W	RET1	P22276	1149 aa	Known RBP	11.46	□□□□□ -0.57
SMM1	YNR015W	DPH6	Q12429	685 aa		11.46	□□□□□ -0.57
SMM1	YNR015W	TOP1	P04786	769 aa		11.45	□□□□□ -0.58
SMM1	YNR015W	YNG2	P38806	282 aa	Known RBP	11.45	□□□□□ -0.58
SMM1	YNR015W	RPS9B	P05755	195 aa	Known RBP	11.44	□□□□□ -0.58
SMM1	YNR015W	KRE2	P27809	442 aa		11.44	□□□□□ -0.58
SMM1	YNR015W	SHC1	P39000	512 aa		11.44	□□□□□ -0.58
SMM1	YNR015W	NGR1	P32831	672 aa	Known RBP	11.43	□□□□□ -0.58
SMM1	YNR015W	FPK1	P53739	893 aa		11.43	□□□□□ -0.58
SMM1	YNR015W	MGM1	P32266	881 aa		11.42	□□□□□ -0.58
SMM1	YNR015W	SPL2	P38839	148 aa		11.42	□□□□□ -0.58
SMM1	YNR015W	POL32	P47110	350 aa		11.42	□□□□□ -0.58
SMM1	YNR015W	ATG20	Q07528	640 aa		11.42	□□□□□ -0.58
SMM1	YNR015W	TFC8	Q12308	588 aa		11.42	□□□□□ -0.58
SMM1	YNR015W	SNU66	Q12420	587 aa	Predicted RBP	11.42	□□□□□ -0.58
SMM1	YNR015W	SPO1	P53541	631 aa		11.41	□□□□□ -0.58
SMM1	YNR015W	DPL1	Q05567	589 aa		11.41	□□□□□ -0.58
SMM1	YNR015W	THI3	Q07471	609 aa		11.41	□□□□□ -0.58
SMM1	YNR015W	GCD7	P32502	381 aa	Predicted RBP	11.4	□□□□□ -0.58
SMM1	YNR015W	ILV3	P39522	585 aa	Known RBP	11.4	□□□□□ -0.58
SMM1	YNR015W	PUF6	Q04373	656 aa	Known RBP	11.4	□□□□□ -0.58
SMM1	YNR015W	HO	P09932	586 aa		11.39	□□□□□ -0.59
SMM1	YNR015W	YGL015C	P33199	130 aa		11.39	□□□□□ -0.59
SMM1	YNR015W	SET4	P42948	560 aa		11.39	□□□□□ -0.59
SMM1	YNR015W	HGH1	P48362	394 aa	Known RBP	11.39	□□□□□ -0.59
SMM1	YNR015W	RPT4	P53549	437 aa	Known RBP	11.39	□□□□□ -0.59
SMM1	YNR015W	ADR1	P07248	1323 aa		11.38	□□□□□ -0.59
SMM1	YNR015W	SRC1	Q03707	834 aa		11.38	□□□□□ -0.59
SMM1	YNR015W	SLI15	P38283	698 aa		11.37	□□□□□ -0.59
SMM1	YNR015W	HKR1	P41809	1802 aa		11.37	□□□□□ -0.59
SMM1	YNR015W	SSF1	P38789	453 aa	Predicted RBP	11.36	□□□□□ -0.59
SMM1	YNR015W	UBX2	Q04228	584 aa		11.36	□□□□□ -0.59
SMM1	YNR015W	NUG1	P40010	520 aa	Known RBP	11.35	□□□□□ -0.59
SMM1	YNR015W	GAS5	Q08193	484 aa		11.35	□□□□□ -0.59
SMM1	YNR015W	GYP5	Q12344	894 aa		11.35	□□□□□ -0.59
SMM1	YNR015W	SEC18	P18759	758 aa	Known RBP	11.34	□□□□□ -0.59
SMM1	YNR015W	LCB1	P25045	558 aa	Known RBP	11.34	□□□□□ -0.59
SMM1	YNR015W	SLA1	P32790	1244 aa		11.34	□□□□□ -0.59
SMM1	YNR015W	MSM1	P22438	575 aa		11.33	□□□□□ -0.6
SMM1	YNR015W	TIF4632	P39936	914 aa	Known RBP	11.33	□□□□□ -0.6
SMM1	YNR015W	IRC4	Q03036	179 aa		11.33	□□□□□ -0.6
SMM1	YNR015W	FAS2	P19097	1887 aa	Known RBP	11.33	□□□□□ -0.6
SMM1	YNR015W	POM152	P39685	1337 aa		11.32	□□□□□ -0.6
SMM1	YNR015W	AI2	P03876	854 aa		11.31	□□□□□ -0.6

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms