RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W ETP1P38748 585 aaKnown RBP7.65□□□□□ -1.18
RPN11YFR004W POM152P39685 1337 aa7.65□□□□□ -1.18
RPN11YFR004W YNR021WP53723 404 aaKnown RBP7.65□□□□□ -1.18
RPN11YFR004W HIM1Q06674 414 aa7.65□□□□□ -1.18
RPN11YFR004W CTI6Q08923 506 aa7.64□□□□□ -1.19
RPN11YFR004W YLR278CQ05854 1341 aa7.63□□□□□ -1.19
RPN11YFR004W THS1P04801 734 aaKnown RBP7.63□□□□□ -1.19
RPN11YFR004W PBS2P08018 668 aa7.63□□□□□ -1.19
RPN11YFR004W MAK11P20484 414 aaKnown RBP7.63□□□□□ -1.19
RPN11YFR004W RET1P22276 1149 aaKnown RBP7.63□□□□□ -1.19
RPN11YFR004W VNX1P42839 908 aa7.63□□□□□ -1.19
RPN11YFR004W CTF4Q01454 927 aa7.63□□□□□ -1.19
RPN11YFR004W SPP1Q03012 353 aa7.63□□□□□ -1.19
RPN11YFR004W ATG20Q07528 640 aa7.63□□□□□ -1.19
RPN11YFR004W PMD1P32634 1753 aa7.62□□□□□ -1.19
RPN11YFR004W VMA1P17255 1071 aaKnown RBP7.62□□□□□ -1.19
RPN11YFR004W SHC1P39000 512 aa7.62□□□□□ -1.19
RPN11YFR004W TEA1P47988 759 aa7.62□□□□□ -1.19
RPN11YFR004W ERO1Q03103 563 aa7.62□□□□□ -1.19
RPN11YFR004W FIG2P25653 1609 aa7.62□□□□□ -1.19
RPN11YFR004W TOP1P04786 769 aa7.61□□□□□ -1.19
RPN11YFR004W RTG2P32608 588 aaKnown RBP7.61□□□□□ -1.19
RPN11YFR004W FAS2P19097 1887 aaKnown RBP7.61□□□□□ -1.19
RPN11YFR004W LPD1P09624 499 aaKnown RBP7.6□□□□□ -1.19
RPN11YFR004W SIS1P25294 352 aaKnown RBP7.6□□□□□ -1.19
RPN11YFR004W HSP104P31539 908 aaKnown RBP7.6□□□□□ -1.19
RPN11YFR004W BUD27P43573 796 aaKnown RBP RIP-Chip data7.6□□□□□ -1.19not detected
RPN11YFR004W DSD1P53095 428 aa7.6□□□□□ -1.19
RPN11YFR004W MDG1P53885 366 aa7.6□□□□□ -1.19
RPN11YFR004W RMT2Q03305 412 aa7.6□□□□□ -1.19
RPN11YFR004W TRK1P12685 1235 aa7.59□□□□□ -1.19
RPN11YFR004W ICL1P28240 557 aaPredicted RBP7.59□□□□□ -1.19
RPN11YFR004W RAT1Q02792 1006 aaKnown RBP7.59□□□□□ -1.19
RPN11YFR004W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.58□□□□□ -1.2not detected
RPN11YFR004W PHM7Q12252 991 aa7.58□□□□□ -1.2
RPN11YFR004W SET4P42948 560 aa7.57□□□□□ -1.2
RPN11YFR004W BDF2Q07442 638 aa7.57□□□□□ -1.2
RPN11YFR004W NOP53Q12080 455 aaKnown RBP7.57□□□□□ -1.2
RPN11YFR004W YKU70P32807 602 aa7.56□□□□□ -1.2
RPN11YFR004W VHR2P40041 505 aa7.56□□□□□ -1.2
RPN11YFR004W IRC3Q06683 689 aa7.56□□□□□ -1.2
RPN11YFR004W YDL144CQ07589 356 aa7.56□□□□□ -1.2
RPN11YFR004W CDC45Q08032 650 aa7.56□□□□□ -1.2
RPN11YFR004W AIM7Q12156 149 aa7.56□□□□□ -1.2
RPN11YFR004W KAR2P16474 682 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W SIT4P20604 311 aa7.55□□□□□ -1.2
RPN11YFR004W GLC3P32775 704 aa7.55□□□□□ -1.2
RPN11YFR004W SER1P33330 395 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W TIF11P38912 153 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W VPS27P40343 622 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W YFR016CP43597 1233 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W DIB1Q06819 143 aaPredicted RBP7.55□□□□□ -1.2
RPN11YFR004W YOL036WQ08206 761 aa7.55□□□□□ -1.2
RPN11YFR004W GRX6Q12438 231 aa7.55□□□□□ -1.2
RPN11YFR004W RVB2Q12464 471 aaKnown RBP7.55□□□□□ -1.2
RPN11YFR004W HKR1P41809 1802 aa7.53□□□□□ -1.2
RPN11YFR004W RPP0P05317 312 aaKnown RBP7.53□□□□□ -1.2
RPN11YFR004W COQ8P27697 501 aa7.53□□□□□ -1.2
RPN11YFR004W AKL1P38080 1108 aaKnown RBP7.53□□□□□ -1.2
RPN11YFR004W YIL089WP40500 205 aa7.53□□□□□ -1.2
RPN11YFR004W MPP10P47083 593 aaKnown RBP7.53□□□□□ -1.2
RPN11YFR004W NUP42P49686 430 aaKnown RBP7.53□□□□□ -1.2
RPN11YFR004W AOS1Q06624 347 aa7.53□□□□□ -1.2
RPN11YFR004W SUI2P20459 304 aaKnown RBP7.52□□□□□ -1.21
RPN11YFR004W SDH2P21801 266 aa7.52□□□□□ -1.21
RPN11YFR004W EAP1P36041 632 aaKnown RBP7.52□□□□□ -1.21
RPN11YFR004W ULI1P43604 169 aa7.52□□□□□ -1.21
RPN11YFR004W ALE1Q08548 619 aa7.52□□□□□ -1.21
RPN11YFR004W SAM3Q08986 587 aa7.52□□□□□ -1.21
RPN11YFR004W CAF20P12962 161 aaKnown RBP7.51□□□□□ -1.21
RPN11YFR004W DIT2P21595 489 aa7.51□□□□□ -1.21
RPN11YFR004W KCC4P25389 1037 aa7.51□□□□□ -1.21
RPN11YFR004W YGL082WP53155 381 aa7.51□□□□□ -1.21
RPN11YFR004W MAM3Q12296 706 aa7.51□□□□□ -1.21
RPN11YFR004W GYP5Q12344 894 aa7.51□□□□□ -1.21
RPN11YFR004W FET4P40988 552 aa7.5□□□□□ -1.21
RPN11YFR004W SSP2Q08646 371 aa7.5□□□□□ -1.21
RPN11YFR004W TYW1Q08960 810 aaKnown RBP7.5□□□□□ -1.21
RPN11YFR004W SRF1Q12516 437 aa7.5□□□□□ -1.21
RPN11YFR004W MSM1P22438 575 aa7.49□□□□□ -1.21
RPN11YFR004W GUA1P38625 525 aaKnown RBP7.49□□□□□ -1.21
RPN11YFR004W REF2P42073 533 aaPredicted RBP7.49□□□□□ -1.21
RPN11YFR004W TIM50Q02776 476 aa7.49□□□□□ -1.21
RPN11YFR004W UBP16Q02863 499 aa7.49□□□□□ -1.21
RPN11YFR004W GAP1P19145 602 aaPredicted RBP7.48□□□□□ -1.21
RPN11YFR004W RTR1P40084 226 aaPredicted RBP7.48□□□□□ -1.21
RPN11YFR004W PEA2P40091 420 aa7.48□□□□□ -1.21
RPN11YFR004W RRP46P53256 223 aaPredicted RBP7.48□□□□□ -1.21
RPN11YFR004W ARG8P18544 423 aa7.47□□□□□ -1.21
RPN11YFR004W NTH2P35172 780 aa7.47□□□□□ -1.21
RPN11YFR004W MAC1P35192 417 aa7.47□□□□□ -1.21
RPN11YFR004W EDS1P38073 919 aa7.47□□□□□ -1.21
RPN11YFR004W DPL1Q05567 589 aa7.47□□□□□ -1.21
RPN11YFR004W TIF6Q12522 245 aaKnown RBP7.47□□□□□ -1.21
RPN11YFR004W SSK22P25390 1331 aaPredicted RBP7.47□□□□□ -1.21
RPN11YFR004W PTC3P34221 468 aaKnown RBP7.46□□□□□ -1.22
RPN11YFR004W DCW1P36091 449 aa7.46□□□□□ -1.22
RPN11YFR004W ATH1P48016 1211 aa7.46□□□□□ -1.22
RPN11YFR004W PAP2P53632 584 aaKnown RBP7.46□□□□□ -1.22
RPN11YFR004W RPC31P17890 251 aa7.45□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms