RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	SPT16	P32558	1035 aa	Known RBP	7.87	□□□□□ -1.15
RPT3	YDR394W	ATF2	P53296	535 aa		7.87	□□□□□ -1.15
RPT3	YDR394W	AGE1	Q04412	482 aa		7.87	□□□□□ -1.15
RPT3	YDR394W	LEU3	P08638	886 aa		7.86	□□□□□ -1.15
RPT3	YDR394W	FPK1	P53739	893 aa		7.86	□□□□□ -1.15
RPT3	YDR394W	YNL115C	P53925	644 aa		7.86	□□□□□ -1.15
RPT3	YDR394W	TAF8	Q03750	510 aa		7.86	□□□□□ -1.15
RPT3	YDR394W	RAD9	P14737	1309 aa		7.85	□□□□□ -1.15
RPT3	YDR394W	ERG12	P07277	443 aa		7.85	□□□□□ -1.15
RPT3	YDR394W	PAC1	P39946	494 aa	Known RBP	7.85	□□□□□ -1.15
RPT3	YDR394W	CST6	P40535	587 aa		7.85	□□□□□ -1.15
RPT3	YDR394W	TUB4	P53378	473 aa		7.83	□□□□□ -1.16
RPT3	YDR394W	YMR196W	Q04336	1088 aa		7.83	□□□□□ -1.16
RPT3	YDR394W	PAT1	P25644	796 aa	Known RBP	7.82	□□□□□ -1.16
RPT3	YDR394W	IOC4	Q04213	475 aa		7.82	□□□□□ -1.16
RPT3	YDR394W	AIM7	Q12156	149 aa		7.82	□□□□□ -1.16
RPT3	YDR394W	CHZ1	P40019	153 aa	Predicted RBP	7.81	□□□□□ -1.16
RPT3	YDR394W	CAB1	Q04430	367 aa		7.81	□□□□□ -1.16
RPT3	YDR394W	LAM6	Q08001	693 aa		7.81	□□□□□ -1.16
RPT3	YDR394W	HST2	P53686	357 aa		7.79	□□□□□ -1.16
RPT3	YDR394W	RPP0	P05317	312 aa	Known RBP	7.78	□□□□□ -1.16
RPT3	YDR394W	SLY41	P22215	453 aa		7.78	□□□□□ -1.16
RPT3	YDR394W	BDP1	P46678	594 aa		7.78	□□□□□ -1.16
RPT3	YDR394W	MRX12	P47084	519 aa		7.78	□□□□□ -1.16
RPT3	YDR394W	CFT1	Q06632	1357 aa	Known RBP	7.78	□□□□□ -1.16
RPT3	YDR394W	SCJ1	P25303	377 aa		7.77	□□□□□ -1.17
RPT3	YDR394W	FRK1	Q03002	865 aa	Predicted RBP	7.77	□□□□□ -1.17
RPT3	YDR394W	MOD5	P07884	428 aa		7.76	□□□□□ -1.17
RPT3	YDR394W	CLA4	P48562	842 aa		7.75	□□□□□ -1.17
RPT3	YDR394W	KRE5	P22023	1365 aa		7.74	□□□□□ -1.17
RPT3	YDR394W	PSK1	P31374	1356 aa		7.74	□□□□□ -1.17
RPT3	YDR394W	MMP1	Q12372	583 aa		7.74	□□□□□ -1.17
RPT3	YDR394W	DNF3	Q12674	1656 aa		7.73	□□□□□ -1.17
RPT3	YDR394W	YML133C	Q03099	1374 aa		7.73	□□□□□ -1.17
RPT3	YDR394W	YLL067C	Q07888	1374 aa		7.73	□□□□□ -1.17
RPT3	YDR394W	YLL066C	Q99208	1374 aa		7.73	□□□□□ -1.17
RPT3	YDR394W	GLN1	P32288	370 aa	Known RBP	7.73	□□□□□ -1.17
RPT3	YDR394W	MAK10	Q02197	733 aa		7.73	□□□□□ -1.17
RPT3	YDR394W	TRK1	P12685	1235 aa		7.72	□□□□□ -1.17
RPT3	YDR394W	ESS1	P22696	170 aa		7.72	□□□□□ -1.17
RPT3	YDR394W	KTR1	P27810	393 aa	Known RBP	7.72	□□□□□ -1.17
RPT3	YDR394W	VPS27	P40343	622 aa	Known RBP	7.72	□□□□□ -1.17
RPT3	YDR394W	RIA1	P53893	1110 aa		7.72	□□□□□ -1.17
RPT3	YDR394W	CDC45	Q08032	650 aa		7.72	□□□□□ -1.17
RPT3	YDR394W	TYW1	Q08960	810 aa	Known RBP	7.72	□□□□□ -1.17
RPT3	YDR394W	YEF3	P16521	1044 aa	Known RBP	7.71	□□□□□ -1.18
RPT3	YDR394W	AIR1	P40507	360 aa	Known RBP	7.71	□□□□□ -1.18
RPT3	YDR394W	TRM1	P15565	570 aa	Known RBP	7.7	□□□□□ -1.18
RPT3	YDR394W	YRB30	P53107	440 aa	Predicted RBP	7.7	□□□□□ -1.18
RPT3	YDR394W	KIN1	P13185	1064 aa		7.69	□□□□□ -1.18
RPT3	YDR394W	PUS6	P53294	404 aa		7.69	□□□□□ -1.18
RPT3	YDR394W	RCM1	P53972	490 aa		7.69	□□□□□ -1.18
RPT3	YDR394W	PDC1	P06169	563 aa	Known RBP	7.68	□□□□□ -1.18
RPT3	YDR394W	YJU3	P28321	313 aa		7.68	□□□□□ -1.18
RPT3	YDR394W	RPN1	P38764	993 aa	Known RBP	7.68	□□□□□ -1.18
RPT3	YDR394W	TAP42	Q04372	366 aa		7.68	□□□□□ -1.18
RPT3	YDR394W	TPD3	P31383	635 aa		7.67	□□□□□ -1.18
RPT3	YDR394W	KXD1	P53158	218 aa		7.67	□□□□□ -1.18
RPT3	YDR394W	YNR029C	P53729	429 aa	Known RBP	7.67	□□□□□ -1.18
RPT3	YDR394W	TBF1	Q02457	562 aa		7.67	□□□□□ -1.18
RPT3	YDR394W	YDL144C	Q07589	356 aa		7.67	□□□□□ -1.18
RPT3	YDR394W	YDL206W	Q12424	762 aa		7.67	□□□□□ -1.18
RPT3	YDR394W	LEU2	P04173	364 aa	Predicted RBP	7.66	□□□□□ -1.18
RPT3	YDR394W	CPS1	P27614	576 aa		7.66	□□□□□ -1.18
RPT3	YDR394W	PPH3	P32345	308 aa		7.66	□□□□□ -1.18
RPT3	YDR394W	RRD1	P40454	393 aa	Known RBP	7.66	□□□□□ -1.18
RPT3	YDR394W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	7.66	□□□□□ -1.18	not detected
RPT3	YDR394W	MTR4	P47047	1073 aa	Known RBP	7.66	□□□□□ -1.18
RPT3	YDR394W	CSN12	P47130	423 aa		7.66	□□□□□ -1.18
RPT3	YDR394W	PUS5	Q06244	254 aa		7.66	□□□□□ -1.18
RPT3	YDR394W	PDI1	P17967	522 aa	Known RBP	7.65	□□□□□ -1.18
RPT3	YDR394W	HXT10	P43581	546 aa		7.65	□□□□□ -1.18
RPT3	YDR394W	RPA14	P50106	137 aa		7.65	□□□□□ -1.18
RPT3	YDR394W	HED1	Q03937	162 aa		7.65	□□□□□ -1.18
RPT3	YDR394W	KAR2	P16474	682 aa	Known RBP	7.64	□□□□□ -1.19
RPT3	YDR394W	GRX4	P32642	244 aa		7.64	□□□□□ -1.19
RPT3	YDR394W	PKH3	Q03306	898 aa	Predicted RBP	7.64	□□□□□ -1.19
RPT3	YDR394W	CDC4	P07834	779 aa		7.63	□□□□□ -1.19
RPT3	YDR394W	RSC30	P38781	883 aa		7.63	□□□□□ -1.19
RPT3	YDR394W	YPR097W	Q06839	1073 aa		7.63	□□□□□ -1.19
RPT3	YDR394W	ALR1	Q08269	859 aa		7.63	□□□□□ -1.19
RPT3	YDR394W	RVB2	Q12464	471 aa	Known RBP	7.63	□□□□□ -1.19
RPT3	YDR394W	MLP1	Q02455	1875 aa	Known RBP	7.62	□□□□□ -1.19
RPT3	YDR394W	RTR1	P40084	226 aa	Predicted RBP	7.61	□□□□□ -1.19
RPT3	YDR394W	ADE6	P38972	1358 aa	Known RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	SUI2	P20459	304 aa	Known RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	MPP10	P47083	593 aa	Known RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	PRP43	P53131	767 aa	Known RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	RRP46	P53256	223 aa	Predicted RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	TY1B-NL2	Q99337	1749 aa	Known RBP	7.6	□□□□□ -1.19
RPT3	YDR394W	MET32	Q12041	191 aa		7.59	□□□□□ -1.19
RPT3	YDR394W	AUS1	Q08409	1394 aa		7.59	□□□□□ -1.2
RPT3	YDR394W	FPR3	P38911	411 aa	Known RBP	7.58	□□□□□ -1.2
RPT3	YDR394W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	7.58	□□□□□ -1.2	not detected
RPT3	YDR394W	PRD1	P25375	712 aa		7.57	□□□□□ -1.2
RPT3	YDR394W	RPO41	P13433	1351 aa	Known RBP	7.57	□□□□□ -1.2
RPT3	YDR394W	SNF2	P22082	1703 aa		7.56	□□□□□ -1.2
RPT3	YDR394W	ARG8	P18544	423 aa		7.56	□□□□□ -1.2
RPT3	YDR394W	GUA1	P38625	525 aa	Known RBP	7.56	□□□□□ -1.2
RPT3	YDR394W	PAP2	P53632	584 aa	Known RBP	7.56	□□□□□ -1.2

Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms