RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeastyeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRM3YDL112W ALR1Q08269 859 aa2.71□□□□□ -1.98
TRM3YDL112W ENO2P00925 437 aaKnown RBP2.7□□□□□ -1.98
TRM3YDL112W YML083CQ04526 418 aa2.7□□□□□ -1.98
TRM3YDL112W IXR1P33417 597 aa2.69□□□□□ -1.98
TRM3YDL112W UBX7P38349 436 aa2.69□□□□□ -1.98
TRM3YDL112W HPC2Q01448 625 aa2.69□□□□□ -1.98
TRM3YDL112W MAK10Q02197 733 aa2.69□□□□□ -1.98
TRM3YDL112W DAT1P13483 248 aaKnown RBP2.69□□□□□ -1.98
TRM3YDL112W SRB8P25648 1427 aa2.69□□□□□ -1.98
TRM3YDL112W LAM6Q08001 693 aa2.69□□□□□ -1.98
TRM3YDL112W CHL1P22516 861 aaPredicted RBP2.68□□□□□ -1.98
TRM3YDL112W TY1A-DR4O74302 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-HP0C2I4 478 aaKnown RBP2.68□□□□□ -1.98
TRM3YDL112W TY1A-AP0CX57 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-PR1P0CX58 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-ORP0CX59 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-PR2P0CX60 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-DR5P0CX65 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-ER2P0CX66 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-GR3P0CX67 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-LR1P0CX68 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-MR2P0CX69 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-JR2P47099 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-DR1Q03856 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-ML1Q04706 440 aaKnown RBP2.68□□□□□ -1.98
TRM3YDL112W TY1A-BRQ12217 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-NL2Q12470 440 aa2.68□□□□□ -1.98
TRM3YDL112W TY1A-GR2Q12485 440 aa2.68□□□□□ -1.98
TRM3YDL112W MIP1P15801 1254 aa2.68□□□□□ -1.98
TRM3YDL112W SEC2P17065 759 aa2.68□□□□□ -1.98
TRM3YDL112W SOH1P38633 127 aa2.68□□□□□ -1.98
TRM3YDL112W BNI4P53858 892 aa2.68□□□□□ -1.98
TRM3YDL112W TEC1P18412 486 aa2.67□□□□□ -1.98
TRM3YDL112W SSA4P22202 642 aaKnown RBP2.67□□□□□ -1.98
TRM3YDL112W PDI1P17967 522 aaKnown RBP2.66□□□□□ -1.98
TRM3YDL112W THI12P42883 340 aa2.66□□□□□ -1.98
TRM3YDL112W THI5P43534 340 aa2.66□□□□□ -1.98
TRM3YDL112W THI11P47183 340 aa2.66□□□□□ -1.98
TRM3YDL112W THI13Q07748 340 aa2.66□□□□□ -1.98
TRM3YDL112W MCM16Q12262 181 aa2.66□□□□□ -1.98
TRM3YDL112W GCN2P15442 1659 aa2.66□□□□□ -1.98
TRM3YDL112W FOX2Q02207 900 aaKnown RBP2.66□□□□□ -1.98
TRM3YDL112W PDC1P06169 563 aaKnown RBP2.65□□□□□ -1.99
TRM3YDL112W BDP1P46678 594 aa2.65□□□□□ -1.99
TRM3YDL112W ISR1Q06098 443 aaKnown RBP2.65□□□□□ -1.99
TRM3YDL112W NUP192P47054 1683 aa2.64□□□□□ -1.99
TRM3YDL112W CST6P40535 587 aa2.64□□□□□ -1.99
TRM3YDL112W CLA4P48562 842 aa2.64□□□□□ -1.99
TRM3YDL112W STE20Q03497 939 aaKnown RBP2.64□□□□□ -1.99
TRM3YDL112W SRF1Q12516 437 aa2.64□□□□□ -1.99
TRM3YDL112W YEL077CQ3E7X8 1277 aa2.64□□□□□ -1.99
TRM3YDL112W YRF1-2P40105 1681 aa2.64□□□□□ -1.99
TRM3YDL112W GAP1P19145 602 aaPredicted RBP2.64□□□□□ -1.99
TRM3YDL112W SIT4P20604 311 aa2.64□□□□□ -1.99
TRM3YDL112W FIG4P42837 879 aa2.63□□□□□ -1.99
TRM3YDL112W GUT2P32191 649 aa2.63□□□□□ -1.99
TRM3YDL112W BCK2P33306 851 aa2.63□□□□□ -1.99
TRM3YDL112W TTI1P36097 1038 aa2.63□□□□□ -1.99
TRM3YDL112W IPL1P38991 367 aa2.63□□□□□ -1.99
TRM3YDL112W UTP7P40055 554 aaKnown RBP2.63□□□□□ -1.99
TRM3YDL112W DFG5Q05031 458 aa2.63□□□□□ -1.99
TRM3YDL112W MAK16P10962 306 aaPredicted RBP2.63□□□□□ -1.99
TRM3YDL112W MKS1P34072 584 aa2.63□□□□□ -1.99
TRM3YDL112W ALA1P40825 983 aaKnown RBP2.63□□□□□ -1.99
TRM3YDL112W HAT1Q12341 374 aa2.63□□□□□ -1.99
TRM3YDL112W CFT1Q06632 1357 aaKnown RBP2.62□□□□□ -1.99
TRM3YDL112W RAS1P01119 309 aa2.62□□□□□ -1.99
TRM3YDL112W SSA1P10591 642 aaKnown RBP2.62□□□□□ -1.99
TRM3YDL112W SUB2Q07478 446 aaKnown RBP2.62□□□□□ -1.99
TRM3YDL112W BCK1Q01389 1478 aa2.62□□□□□ -1.99
TRM3YDL112W HXT10P43581 546 aa2.62□□□□□ -1.99
TRM3YDL112W AIR1P40507 360 aaKnown RBP2.62□□□□□ -1.99
TRM3YDL112W UGA3P26370 528 aa2.61□□□□□ -1.99
TRM3YDL112W TGL4P36165 910 aa2.61□□□□□ -1.99
TRM3YDL112W RPA14P50106 137 aa2.61□□□□□ -1.99
TRM3YDL112W RTF1P53064 558 aa2.61□□□□□ -1.99
TRM3YDL112W MRF1P30775 413 aaPredicted RBP2.61□□□□□ -1.99
TRM3YDL112W AGE1Q04412 482 aa2.61□□□□□ -1.99
TRM3YDL112W GBP2P25555 427 aaKnown RBP RIP-Chip data2.61□□□□□ -1.99not detected
TRM3YDL112W DLD1P32891 587 aa2.61□□□□□ -1.99
TRM3YDL112W CBC2Q08920 208 aaKnown RBP RIP-Chip data2.61□□□□□ -1.99not detected
TRM3YDL112W TBS1P38114 1094 aa2.6□□□□□ -1.99
TRM3YDL112W ATG20Q07528 640 aa2.6□□□□□ -1.99
TRM3YDL112W EDE1P34216 1381 aa2.6□□□□□ -1.99
TRM3YDL112W HST3P53687 447 aa2.6□□□□□ -1.99
TRM3YDL112W PUN1Q06991 263 aa2.6□□□□□ -1.99
TRM3YDL112W GRS1P38088 690 aaKnown RBP2.6□□□□□ -1.99
TRM3YDL112W YPR097WQ06839 1073 aa2.6□□□□□ -1.99
TRM3YDL112W SYH1Q02875 849 aaKnown RBP2.59□□□□□ -1.99
TRM3YDL112W RRP5Q05022 1729 aaKnown RBP2.59□□□□□ -1.99
TRM3YDL112W DPS1P04802 557 aaKnown RBP2.59□□□□□ -2
TRM3YDL112W UTR2P32623 467 aa2.58□□□□□ -2
TRM3YDL112W YPP1P46951 817 aa2.58□□□□□ -2
TRM3YDL112W NOB1Q08444 459 aaKnown RBP2.58□□□□□ -2
TRM3YDL112W CSE4P36012 229 aa2.58□□□□□ -2
TRM3YDL112W SLX8P40072 274 aa2.58□□□□□ -2
TRM3YDL112W KAR5Q04746 504 aa2.58□□□□□ -2
TRM3YDL112W PUP1P25043 261 aa2.58□□□□□ -2
TRM3YDL112W BUB1P41695 1021 aaKnown RBP RIP-Chip data2.58□□□□□ -2not detected
TRM3YDL112W SUP45P12385 437 aaKnown RBP2.57□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 117.4 ms