RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CLTCQ00610 1675 aaKnown RBP17.99■□□□□ 0.47
VPS4A-204ENST00000566354 ARHGAP31Q2M1Z3 1444 aa17.98■□□□□ 0.47
VPS4A-204ENST00000566354 MSH5O43196 834 aa17.98■□□□□ 0.47
VPS4A-204ENST00000566354 DCAF11Q8TEB1 546 aa17.97■□□□□ 0.47
VPS4A-204ENST00000566354 PPP6R1Q9UPN7 881 aa17.97■□□□□ 0.47
VPS4A-204ENST00000566354 KDM2AQ9Y2K7 1162 aa17.96■□□□□ 0.47
VPS4A-204ENST00000566354 ZNF326Q5BKZ1 582 aaKnown RBP17.95■□□□□ 0.46
VPS4A-204ENST00000566354 NOS1P29475 1434 aa17.95■□□□□ 0.46
VPS4A-204ENST00000566354 FBXO31Q5XUX0 539 aaPredicted RBP17.94■□□□□ 0.46
VPS4A-204ENST00000566354 SYNMO15061 1565 aa17.93■□□□□ 0.46
VPS4A-204ENST00000566354 PREX1Q8TCU6 1659 aa17.92■□□□□ 0.46
VPS4A-204ENST00000566354 ESF1Q9H501 851 aaKnown RBP17.92■□□□□ 0.46
VPS4A-204ENST00000566354 KIF1BO60333 1816 aa17.91■□□□□ 0.46
VPS4A-204ENST00000566354 USP47Q96K76 1375 aa17.9■□□□□ 0.46
VPS4A-204ENST00000566354 MROH2AA6NES4 1674 aa17.9■□□□□ 0.46
VPS4A-204ENST00000566354 UHRF1BP1Q6BDS2 1440 aa17.89■□□□□ 0.45
VPS4A-204ENST00000566354 SMG6Q86US8 1419 aaKnown RBP17.89■□□□□ 0.45
VPS4A-204ENST00000566354 ERVK-7P63135 1459 aa17.89■□□□□ 0.45
VPS4A-204ENST00000566354 ZMYM3Q14202 1370 aa17.88■□□□□ 0.45
VPS4A-204ENST00000566354 CHGAP10645 457 aaKnown RBP17.88■□□□□ 0.45
VPS4A-204ENST00000566354 PIK3C2BO00750 1634 aa17.88■□□□□ 0.45
VPS4A-204ENST00000566354 B4GALNT3Q6L9W6 998 aa17.88■□□□□ 0.45
VPS4A-204ENST00000566354 IDI1Q13907 227 aa17.87■□□□□ 0.45
VPS4A-204ENST00000566354 ADGRB3O60242 1522 aa17.86■□□□□ 0.45
VPS4A-204ENST00000566354 EIF5BO60841 1220 aaKnown RBP17.86■□□□□ 0.45
VPS4A-204ENST00000566354 PRAG1Q86YV5 1406 aa17.86■□□□□ 0.45
VPS4A-204ENST00000566354 NEURL4Q96JN8 1562 aa17.85■□□□□ 0.45
VPS4A-204ENST00000566354 ROCK2O75116 1388 aaKnown RBP17.85■□□□□ 0.45
VPS4A-204ENST00000566354 SPATA31D1Q6ZQQ2 1576 aa17.84■□□□□ 0.45
VPS4A-204ENST00000566354 SLC52A1Q9NWF4 448 aa17.83■□□□□ 0.45
VPS4A-204ENST00000566354 FER1L4A9Z1Z3 1794 aa17.83■□□□□ 0.44
VPS4A-204ENST00000566354 NUDCQ9Y266 331 aa17.83■□□□□ 0.44
VPS4A-204ENST00000566354 RALGAPBQ86X10 1494 aa17.82■□□□□ 0.44
VPS4A-204ENST00000566354 RNF123Q5XPI4 1314 aa17.81■□□□□ 0.44
VPS4A-204ENST00000566354 CEBPAP49715 358 aaPredicted RBP17.81■□□□□ 0.44
VPS4A-204ENST00000566354 MYO5BQ9ULV0 1848 aa17.81■□□□□ 0.44
VPS4A-204ENST00000566354 IFT172Q9UG01 1749 aa17.8■□□□□ 0.44
VPS4A-204ENST00000566354 UBE2Q2Q8WVN8 375 aa17.8■□□□□ 0.44
VPS4A-204ENST00000566354 POLR3GLQ9BT43 218 aa17.8■□□□□ 0.44
VPS4A-204ENST00000566354 TRPM1Q7Z4N2 1603 aa17.8■□□□□ 0.44
VPS4A-204ENST00000566354 MADDQ8WXG6 1647 aa17.79■□□□□ 0.44
VPS4A-204ENST00000566354 NBPF1Q3BBV0 1214 aa17.78■□□□□ 0.44
VPS4A-204ENST00000566354 PNISRQ8TF01 805 aaKnown RBP17.78■□□□□ 0.44
VPS4A-204ENST00000566354 TMEM131LA2VDJ0 1609 aa17.78■□□□□ 0.44
VPS4A-204ENST00000566354 C3P01024 1663 aa17.77■□□□□ 0.44
VPS4A-204ENST00000566354 ADGRF5Q8IZF2 1346 aa17.77■□□□□ 0.44
VPS4A-204ENST00000566354 PPLO60437 1756 aa17.77■□□□□ 0.44
VPS4A-204ENST00000566354 TMC1Q8TDI8 760 aa17.76■□□□□ 0.43
VPS4A-204ENST00000566354 CARD11Q9BXL7 1154 aa17.76■□□□□ 0.43
VPS4A-204ENST00000566354 MYOM2P54296 1465 aa17.76■□□□□ 0.43
VPS4A-204ENST00000566354 KTN1Q86UP2 1357 aaKnown RBP17.76■□□□□ 0.43
VPS4A-204ENST00000566354 NUTM2DQ5VT03 806 aaPredicted RBP17.76■□□□□ 0.43
VPS4A-204ENST00000566354 STAC3Q96MF2 364 aa17.75■□□□□ 0.43
VPS4A-204ENST00000566354 TNRQ92752 1358 aa17.75■□□□□ 0.43
VPS4A-204ENST00000566354 STAG3Q9UJ98 1225 aa17.74■□□□□ 0.43
VPS4A-204ENST00000566354 NEXMIFQ5QGS0 1516 aa17.74■□□□□ 0.43
VPS4A-204ENST00000566354 CNGB1Q14028 1251 aaPredicted RBP17.73■□□□□ 0.43
VPS4A-204ENST00000566354 RPGRIP1LQ68CZ1 1315 aa17.73■□□□□ 0.43
VPS4A-204ENST00000566354 RIMS1Q86UR5 1692 aaKnown RBP17.73■□□□□ 0.43
VPS4A-204ENST00000566354 ADAMTSL3P82987 1691 aa17.72■□□□□ 0.43
VPS4A-204ENST00000566354 CCDC136Q96JN2 1154 aa17.72■□□□□ 0.43
VPS4A-204ENST00000566354 NRXN1Q9ULB1 1477 aa17.71■□□□□ 0.43
VPS4A-204ENST00000566354 RALBP1Q15311 655 aa17.71■□□□□ 0.43
VPS4A-204ENST00000566354 BRD4O60885 1362 aaPredicted RBP17.71■□□□□ 0.43
VPS4A-204ENST00000566354 GPRASP1Q5JY77 1395 aa17.71■□□□□ 0.43
VPS4A-204ENST00000566354 LRPPRCP42704 1394 aaKnown RBP17.71■□□□□ 0.43
VPS4A-204ENST00000566354 A2ML1A8K2U0 1454 aa17.71■□□□□ 0.42
VPS4A-204ENST00000566354 KCNA4P22459 653 aa17.7■□□□□ 0.42
VPS4A-204ENST00000566354 CFAP70Q5T0N1 1121 aa17.7■□□□□ 0.42
VPS4A-204ENST00000566354 ST20-MTHFSA0A0A6YYL1 179 aa17.7■□□□□ 0.42
VPS4A-204ENST00000566354 MYBBP1AQ9BQG0 1328 aaKnown RBP17.69■□□□□ 0.42
VPS4A-204ENST00000566354 SENP3Q9H4L4 574 aaPredicted RBP17.69■□□□□ 0.42
VPS4A-204ENST00000566354 PIK3C2GO75747 1445 aa17.68■□□□□ 0.42
VPS4A-204ENST00000566354 VGFO15240 615 aaPredicted RBP17.67■□□□□ 0.42
VPS4A-204ENST00000566354 LAMC1P11047 1609 aa17.67■□□□□ 0.42
VPS4A-204ENST00000566354 KIAA1210Q9ULL0 1709 aa17.66■□□□□ 0.42
VPS4A-204ENST00000566354 UBR1Q8IWV7 1749 aa17.65■□□□□ 0.42
VPS4A-204ENST00000566354 NLRP1Q9C000 1473 aa17.64■□□□□ 0.41
VPS4A-204ENST00000566354 NOP58Q9Y2X3 529 aaKnown RBP17.64■□□□□ 0.41
VPS4A-204ENST00000566354 ZFYVE9O95405 1425 aa17.64■□□□□ 0.41
VPS4A-204ENST00000566354 RIMS2Q9UQ26 1411 aa17.63■□□□□ 0.41
VPS4A-204ENST00000566354 C14orf93Q9H972 538 aaKnown RBP17.63■□□□□ 0.41
VPS4A-204ENST00000566354 KDM5AP29375 1690 aaKnown RBP17.61■□□□□ 0.41
VPS4A-204ENST00000566354 IQGAP1P46940 1657 aa17.61■□□□□ 0.41
VPS4A-204ENST00000566354 MYO3AQ8NEV4 1616 aa17.61■□□□□ 0.41
VPS4A-204ENST00000566354 TMEM132EQ6IEE7 984 aa17.6■□□□□ 0.41
VPS4A-204ENST00000566354 NLRP13Q86W25 1043 aa17.6■□□□□ 0.41
VPS4A-204ENST00000566354 ANP32AP39687 249 aaKnown RBP17.59■□□□□ 0.41
VPS4A-204ENST00000566354 SCAF11Q99590 1463 aaKnown RBP17.59■□□□□ 0.41
VPS4A-204ENST00000566354 PDE3BQ13370 1112 aa17.59■□□□□ 0.41
VPS4A-204ENST00000566354 ADGRB1O14514 1584 aa17.58■□□□□ 0.41
VPS4A-204ENST00000566354 PARD3Q8TEW0 1356 aa17.58■□□□□ 0.41
VPS4A-204ENST00000566354 TMEM2Q9UHN6 1383 aa17.58■□□□□ 0.41
VPS4A-204ENST00000566354 SETBP1Q9Y6X0 1596 aa17.58■□□□□ 0.4
VPS4A-204ENST00000566354 RRP1P56182 461 aaKnown RBP17.58■□□□□ 0.4
VPS4A-204ENST00000566354 SENP3-EIF4A1A0A087X0R7 540 aa17.57■□□□□ 0.4
VPS4A-204ENST00000566354 PTPRMP28827 1452 aa17.57■□□□□ 0.4
VPS4A-204ENST00000566354 IPO9Q96P70 1041 aaKnown RBP17.56■□□□□ 0.4
VPS4A-204ENST00000566354 TESK2Q96S53 571 aa17.55■□□□□ 0.4
VPS4A-204ENST00000566354 RCAN3Q9UKA8 241 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms