RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 CD109Q6YHK3 1445 aa18.34■□□□□ 0.53
GTF3C1-203ENST00000562609 SKAP1Q86WV1 359 aa18.33■□□□□ 0.53
GTF3C1-203ENST00000562609 TRPM1Q7Z4N2 1603 aa18.33■□□□□ 0.52
GTF3C1-203ENST00000562609 RAPGEF3O95398 923 aa18.33■□□□□ 0.52
GTF3C1-203ENST00000562609 NAP1L5Q96NT1 182 aaPredicted RBP18.33■□□□□ 0.52
GTF3C1-203ENST00000562609 ATP10AO60312 1499 aa18.32■□□□□ 0.52
GTF3C1-203ENST00000562609 INO80Q9ULG1 1556 aaPredicted RBP18.32■□□□□ 0.52
GTF3C1-203ENST00000562609 GGT6Q6P531 493 aa18.31■□□□□ 0.52
GTF3C1-203ENST00000562609 RRP9O43818 475 aaKnown RBP18.3■□□□□ 0.52
GTF3C1-203ENST00000562609 KANK1Q14678 1352 aa18.3■□□□□ 0.52
GTF3C1-203ENST00000562609 HSP90AA1P07900 732 aaKnown RBP18.29■□□□□ 0.52
GTF3C1-203ENST00000562609 ARID4BQ4LE39 1312 aaPredicted RBP18.28■□□□□ 0.52
GTF3C1-203ENST00000562609 UGGT1Q9NYU2 1555 aa18.28■□□□□ 0.52
GTF3C1-203ENST00000562609 CFAP65Q6ZU64 1925 aaKnown RBP18.27■□□□□ 0.52
GTF3C1-203ENST00000562609 TESK2Q96S53 571 aa18.27■□□□□ 0.52
GTF3C1-203ENST00000562609 KIDINS220Q9ULH0 1771 aa18.27■□□□□ 0.52
GTF3C1-203ENST00000562609 DISP3Q9P2K9 1392 aa18.27■□□□□ 0.51
GTF3C1-203ENST00000562609 CHGAP10645 457 aaKnown RBP18.26■□□□□ 0.51
GTF3C1-203ENST00000562609 ZNF518AQ6AHZ1 1483 aa18.25■□□□□ 0.51
GTF3C1-203ENST00000562609 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
GTF3C1-203ENST00000562609 RCAN3Q9UKA8 241 aa18.25■□□□□ 0.51
GTF3C1-203ENST00000562609 CLTCL1P53675 1640 aa18.24■□□□□ 0.51
GTF3C1-203ENST00000562609 DEPDC5O75140 1603 aa18.24■□□□□ 0.51
GTF3C1-203ENST00000562609 GPRASP1Q5JY77 1395 aa18.24■□□□□ 0.51
GTF3C1-203ENST00000562609 POGKQ9P215 609 aa18.24■□□□□ 0.51
GTF3C1-203ENST00000562609 SPHKAPQ2M3C7 1700 aa18.23■□□□□ 0.51
GTF3C1-203ENST00000562609 TMC1Q8TDI8 760 aa18.23■□□□□ 0.51
GTF3C1-203ENST00000562609 TRPM2O94759 1503 aa18.23■□□□□ 0.51
GTF3C1-203ENST00000562609 PTPRTO14522 1441 aa18.22■□□□□ 0.51
GTF3C1-203ENST00000562609 PNISRQ8TF01 805 aaKnown RBP18.22■□□□□ 0.51
GTF3C1-203ENST00000562609 MROH1Q8NDA8 1641 aa18.21■□□□□ 0.51
GTF3C1-203ENST00000562609 TET3O43151 1660 aa18.21■□□□□ 0.51
GTF3C1-203ENST00000562609 CC2D1BQ5T0F9 858 aaKnown RBP18.21■□□□□ 0.51
GTF3C1-203ENST00000562609 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-203ENST00000562609 POGZQ7Z3K3 1410 aa18.2■□□□□ 0.5
GTF3C1-203ENST00000562609 PRDM15P57071 1507 aaPredicted RBP18.2■□□□□ 0.5
GTF3C1-203ENST00000562609 CFAP70Q5T0N1 1121 aa18.19■□□□□ 0.5
GTF3C1-203ENST00000562609 PANK3Q9H999 370 aa18.19■□□□□ 0.5
GTF3C1-203ENST00000562609 TMF1P82094 1093 aa18.18■□□□□ 0.5
GTF3C1-203ENST00000562609 ADGRF5Q8IZF2 1346 aa18.18■□□□□ 0.5
GTF3C1-203ENST00000562609 VWDEQ8N2E2 1590 aa18.18■□□□□ 0.5
GTF3C1-203ENST00000562609 L1TD1Q5T7N2 865 aaKnown RBP18.18■□□□□ 0.5
GTF3C1-203ENST00000562609 PER1O15534 1290 aaPredicted RBP18.17■□□□□ 0.5
GTF3C1-203ENST00000562609 EIF2AK4Q9P2K8 1649 aaKnown RBP18.16■□□□□ 0.5
GTF3C1-203ENST00000562609 CEP152O94986 1710 aa18.16■□□□□ 0.5
GTF3C1-203ENST00000562609 NUTM2DQ5VT03 806 aaPredicted RBP18.16■□□□□ 0.5
GTF3C1-203ENST00000562609 MADDQ8WXG6 1647 aa18.16■□□□□ 0.5
GTF3C1-203ENST00000562609 ARXQ96QS3 562 aa18.15■□□□□ 0.5
GTF3C1-203ENST00000562609 COL17A1Q9UMD9 1497 aaPredicted RBP18.15■□□□□ 0.5
GTF3C1-203ENST00000562609 CLCN1P35523 988 aa18.15■□□□□ 0.5
GTF3C1-203ENST00000562609 PPRC1Q5VV67 1664 aaKnown RBP18.14■□□□□ 0.49
GTF3C1-203ENST00000562609 PLIN1O60240 522 aa18.14■□□□□ 0.49
GTF3C1-203ENST00000562609 FRMPD1Q5SYB0 1578 aa18.13■□□□□ 0.49
GTF3C1-203ENST00000562609 MYBBP1AQ9BQG0 1328 aaKnown RBP18.13■□□□□ 0.49
GTF3C1-203ENST00000562609 FAM69CQ0P6D2 419 aa18.12■□□□□ 0.49
GTF3C1-203ENST00000562609 EFCAB6Q5THR3 1501 aa18.12■□□□□ 0.49
GTF3C1-203ENST00000562609 FAM161AQ3B820 660 aa18.12■□□□□ 0.49
GTF3C1-203ENST00000562609 MLH3Q9UHC1 1453 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 RALBP1Q15311 655 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 CRBNQ96SW2 442 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 NPATQ14207 1427 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 KTN1Q86UP2 1357 aaKnown RBP18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 C8orf34Q49A92 452 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 HECW2Q9P2P5 1572 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 ABCA6Q8N139 1617 aa18.11■□□□□ 0.49
GTF3C1-203ENST00000562609 RNF17Q9BXT8 1623 aaKnown RBP18.1■□□□□ 0.49
GTF3C1-203ENST00000562609 LAMC1P11047 1609 aa18.09■□□□□ 0.49
GTF3C1-203ENST00000562609 YEATS2Q9ULM3 1422 aa18.08■□□□□ 0.49
GTF3C1-203ENST00000562609 CFAP74Q9C0B2 1584 aa18.08■□□□□ 0.48
GTF3C1-203ENST00000562609 A0A0U1RQG5 324 aaPredicted RBP18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 XRCC6P12956 609 aaKnown RBP eCLIP18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 MROH2AA6NES4 1674 aa18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 SCAF11Q99590 1463 aaKnown RBP18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 NOS1P29475 1434 aa18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 TMEM132EQ6IEE7 984 aa18.07■□□□□ 0.48
GTF3C1-203ENST00000562609 KIF1BO60333 1816 aa18.06■□□□□ 0.48
GTF3C1-203ENST00000562609 NLRP13Q86W25 1043 aa18.06■□□□□ 0.48
GTF3C1-203ENST00000562609 NEO1Q92859 1461 aa18.06■□□□□ 0.48
GTF3C1-203ENST00000562609 PARD3Q8TEW0 1356 aa18.05■□□□□ 0.48
GTF3C1-203ENST00000562609 LRPPRCP42704 1394 aaKnown RBP18.05■□□□□ 0.48
GTF3C1-203ENST00000562609 BRD4O60885 1362 aaPredicted RBP18.05■□□□□ 0.48
GTF3C1-203ENST00000562609 TRAK1Q9UPV9 953 aa18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 IQGAP1P46940 1657 aa18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 PANK2Q9BZ23 570 aa18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 RBM10P98175 930 aaKnown RBP18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 CDCA7LQ96GN5 454 aa18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 STAC3Q96MF2 364 aa18.04■□□□□ 0.48
GTF3C1-203ENST00000562609 RIMBP3CA6NJZ7 1639 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 RIMBP3BA6NNM3 1639 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 RIMBP3Q9UFD9 1639 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 GOLGA6L3A6NEY3 463 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 SLC24A1O60721 1099 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 KNSTRNQ9Y448 316 aa18.03■□□□□ 0.48
GTF3C1-203ENST00000562609 TSPOAP1O95153 1857 aa18.02■□□□□ 0.48
GTF3C1-203ENST00000562609 KDM2BQ8NHM5 1336 aa18.02■□□□□ 0.48
GTF3C1-203ENST00000562609 MAP3K4Q9Y6R4 1608 aa18.02■□□□□ 0.47
GTF3C1-203ENST00000562609 SLKQ9H2G2 1235 aaPredicted RBP18.01■□□□□ 0.47
GTF3C1-203ENST00000562609 ABCC3O15438 1527 aa18.01■□□□□ 0.47
GTF3C1-203ENST00000562609 LMTK2Q8IWU2 1503 aa18.01■□□□□ 0.47
GTF3C1-203ENST00000562609 DIP2CQ9Y2E4 1556 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms