RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
GTF3C1-203ENST00000562609 CCDC180Q9P1Z9 1646 aa24.54■■□□□ 1.52
GTF3C1-203ENST00000562609 SHROOM4Q9ULL8 1493 aa24.41■■□□□ 1.5
GTF3C1-203ENST00000562609 DCAF8L2P0C7V8 631 aa24.25■■□□□ 1.47
GTF3C1-203ENST00000562609 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.46
GTF3C1-203ENST00000562609 SUPT5HO00267 1087 aaKnown RBP23.74■■□□□ 1.39
GTF3C1-203ENST00000562609 HRCP23327 699 aa23.7■■□□□ 1.39
GTF3C1-203ENST00000562609 PELP1Q8IZL8 1130 aaKnown RBP23.51■■□□□ 1.35
GTF3C1-203ENST00000562609 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
GTF3C1-203ENST00000562609 ABCC9O60706 1549 aa23.33■■□□□ 1.33
GTF3C1-203ENST00000562609 PPARGC1BQ86YN6 1023 aaKnown RBP23.23■■□□□ 1.31
GTF3C1-203ENST00000562609 SCRIBQ14160 1630 aa23.1■■□□□ 1.29
GTF3C1-203ENST00000562609 PCGF6Q9BYE7 350 aa23.03■■□□□ 1.28
GTF3C1-203ENST00000562609 MYO15BQ96JP2 1530 aa22.93■■□□□ 1.26
GTF3C1-203ENST00000562609 NACADO15069 1562 aa22.83■■□□□ 1.25
GTF3C1-203ENST00000562609 CHIC1Q5VXU3 224 aa22.76■■□□□ 1.23
GTF3C1-203ENST00000562609 MYT1Q01538 1121 aa22.72■■□□□ 1.23
GTF3C1-203ENST00000562609 SCAF1Q9H7N4 1312 aaKnown RBP22.69■■□□□ 1.22
GTF3C1-203ENST00000562609 RSF1Q96T23 1441 aaPredicted RBP22.62■■□□□ 1.21
GTF3C1-203ENST00000562609 RB1CC1Q8TDY2 1594 aa22.58■■□□□ 1.21
GTF3C1-203ENST00000562609 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
GTF3C1-203ENST00000562609 MROH2BQ7Z745 1585 aa22.38■■□□□ 1.17
GTF3C1-203ENST00000562609 PABPN1Q86U42 306 aaKnown RBP eCLIP22.3■■□□□ 1.16
GTF3C1-203ENST00000562609 UNC13AQ9UPW8 1703 aa22.27■■□□□ 1.16
GTF3C1-203ENST00000562609 WIZO95785 1651 aa22.24■■□□□ 1.15
GTF3C1-203ENST00000562609 LOC105371045A0A1W2PR82 267 aa22.17■■□□□ 1.14
GTF3C1-203ENST00000562609 TRIM26Q12899 539 aaPredicted RBP22.14■■□□□ 1.13
GTF3C1-203ENST00000562609 ZEB1P37275 1124 aaPredicted RBP22.1■■□□□ 1.13
GTF3C1-203ENST00000562609 BAZ1AQ9NRL2 1556 aaPredicted RBP22.09■■□□□ 1.13
GTF3C1-203ENST00000562609 TRIM41Q8WV44 630 aa22.07■■□□□ 1.12
GTF3C1-203ENST00000562609 BICRAQ9NZM4 1560 aa22.01■■□□□ 1.11
GTF3C1-203ENST00000562609 FAM9AQ8IZU1 332 aaPredicted RBP21.99■■□□□ 1.11
GTF3C1-203ENST00000562609 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
GTF3C1-203ENST00000562609 SMARCA4P51532 1647 aa21.98■■□□□ 1.11
GTF3C1-203ENST00000562609 NEUROD1Q13562 356 aa21.91■■□□□ 1.1
GTF3C1-203ENST00000562609 EHMT2Q96KQ7 1210 aa21.91■■□□□ 1.1
GTF3C1-203ENST00000562609 GTF3C3Q9Y5Q9 886 aa21.85■■□□□ 1.09
GTF3C1-203ENST00000562609 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
GTF3C1-203ENST00000562609 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
GTF3C1-203ENST00000562609 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
GTF3C1-203ENST00000562609 CENPBP07199 599 aaPredicted RBP21.65■■□□□ 1.06
GTF3C1-203ENST00000562609 ABCC8Q09428 1581 aa21.63■■□□□ 1.05
GTF3C1-203ENST00000562609 EIF4G1Q04637 1599 aaKnown RBP21.63■■□□□ 1.05
GTF3C1-203ENST00000562609 ATAD2BQ9ULI0 1458 aa21.55■■□□□ 1.04
GTF3C1-203ENST00000562609 PEG3Q9GZU2 1588 aa21.5■■□□□ 1.03
GTF3C1-203ENST00000562609 BAZ1BQ9UIG0 1483 aaKnown RBP21.48■■□□□ 1.03
GTF3C1-203ENST00000562609 TTBK1Q5TCY1 1321 aaPredicted RBP21.41■■□□□ 1.02
GTF3C1-203ENST00000562609 DIEXFQ68CQ4 756 aaKnown RBP21.38■■□□□ 1.01
GTF3C1-203ENST00000562609 SOGA1O94964 1423 aa21.35■■□□□ 1.01
GTF3C1-203ENST00000562609 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
GTF3C1-203ENST00000562609 WRNQ14191 1432 aaPredicted RBP eCLIP21.27■■□□□ 1
GTF3C1-203ENST00000562609 BCL11AQ9H165 835 aa21.24■□□□□ 0.99
GTF3C1-203ENST00000562609 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.19■□□□□ 0.98
GTF3C1-203ENST00000562609 SYNJ1O43426 1573 aa21.17■□□□□ 0.98
GTF3C1-203ENST00000562609 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
GTF3C1-203ENST00000562609 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
GTF3C1-203ENST00000562609 CCER1Q8TC90 406 aaPredicted RBP21.16■□□□□ 0.98
GTF3C1-203ENST00000562609 UBTFP17480 764 aaKnown RBP21.12■□□□□ 0.97
GTF3C1-203ENST00000562609 YTHDC1Q96MU7 727 aaKnown RBP21.12■□□□□ 0.97
GTF3C1-203ENST00000562609 HMGXB3Q12766 1538 aa21.08■□□□□ 0.97
GTF3C1-203ENST00000562609 EEA1Q15075 1411 aa20.99■□□□□ 0.95
GTF3C1-203ENST00000562609 CEP162Q5TB80 1403 aa20.99■□□□□ 0.95
GTF3C1-203ENST00000562609 ANP32EQ9BTT0 268 aa20.97■□□□□ 0.95
GTF3C1-203ENST00000562609 RANGAP1P46060 587 aaPredicted RBP20.96■□□□□ 0.95
GTF3C1-203ENST00000562609 TNIKQ9UKE5 1360 aa20.94■□□□□ 0.94
GTF3C1-203ENST00000562609 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
GTF3C1-203ENST00000562609 GOLGA3Q08378 1498 aa20.9■□□□□ 0.94
GTF3C1-203ENST00000562609 TOP2BQ02880 1626 aa20.89■□□□□ 0.94
GTF3C1-203ENST00000562609 CFTRP13569 1480 aa20.89■□□□□ 0.93
GTF3C1-203ENST00000562609 ZNF316A6NFI3 1004 aaPredicted RBP20.85■□□□□ 0.93
GTF3C1-203ENST00000562609 CUX1P39880 1505 aa20.84■□□□□ 0.93
GTF3C1-203ENST00000562609 CEP164Q9UPV0 1460 aa20.82■□□□□ 0.92
GTF3C1-203ENST00000562609 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
GTF3C1-203ENST00000562609 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
GTF3C1-203ENST00000562609 MIER1Q8N108 512 aa20.79■□□□□ 0.92
GTF3C1-203ENST00000562609 CADPSQ9ULU8 1353 aa20.78■□□□□ 0.92
GTF3C1-203ENST00000562609 KIF21BO75037 1637 aa20.74■□□□□ 0.91
GTF3C1-203ENST00000562609 DNAJC5BQ9UF47 199 aa20.73■□□□□ 0.91
GTF3C1-203ENST00000562609 TSHZ2Q9NRE2 1034 aa20.71■□□□□ 0.91
GTF3C1-203ENST00000562609 CLIP1P30622 1438 aa20.7■□□□□ 0.9
GTF3C1-203ENST00000562609 PRKCSHP14314 528 aaPredicted RBP20.69■□□□□ 0.9
GTF3C1-203ENST00000562609 SUPT16HQ9Y5B9 1047 aaKnown RBP20.68■□□□□ 0.9
GTF3C1-203ENST00000562609 NESP48681 1621 aa20.66■□□□□ 0.9
GTF3C1-203ENST00000562609 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
GTF3C1-203ENST00000562609 PRDM2Q13029 1718 aa20.61■□□□□ 0.89
GTF3C1-203ENST00000562609 PRXQ9BXM0 1461 aa20.59■□□□□ 0.89
GTF3C1-203ENST00000562609 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.89
GTF3C1-203ENST00000562609 CUX2O14529 1486 aa20.58■□□□□ 0.88
GTF3C1-203ENST00000562609 CLSPNQ9HAW4 1339 aa20.56■□□□□ 0.88
GTF3C1-203ENST00000562609 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
GTF3C1-203ENST00000562609 VPS8Q8N3P4 1428 aa20.51■□□□□ 0.87
GTF3C1-203ENST00000562609 APLP2Q06481 763 aa20.5■□□□□ 0.87
GTF3C1-203ENST00000562609 ERICH3Q5RHP9 1530 aa20.48■□□□□ 0.87
GTF3C1-203ENST00000562609 IGF1RP08069 1367 aa20.48■□□□□ 0.87
GTF3C1-203ENST00000562609 RAD54L2Q9Y4B4 1467 aa20.46■□□□□ 0.87
GTF3C1-203ENST00000562609 HNRNPUL2Q1KMD3 747 aaKnown RBP20.42■□□□□ 0.86
GTF3C1-203ENST00000562609 CARMIL1Q5VZK9 1371 aa20.39■□□□□ 0.86
GTF3C1-203ENST00000562609 TOPBP1Q92547 1522 aa20.39■□□□□ 0.85
GTF3C1-203ENST00000562609 ARAP1Q96P48 1450 aa20.38■□□□□ 0.85
GTF3C1-203ENST00000562609 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms