RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 SLC52A1Q9NWF4 448 aa13.67□□□□□ -0.22
HERC1-206ENST00000559996 CCDC144AA2RUR9 1427 aa13.66□□□□□ -0.22
HERC1-206ENST00000559996 TNRQ92752 1358 aa13.65□□□□□ -0.22
HERC1-206ENST00000559996 L3MBTL2Q969R5 705 aa13.64□□□□□ -0.23
HERC1-206ENST00000559996 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
HERC1-206ENST00000559996 NEURL4Q96JN8 1562 aa13.62□□□□□ -0.23
HERC1-206ENST00000559996 SETD1BQ9UPS6 1966 aaKnown RBP13.62□□□□□ -0.23
HERC1-206ENST00000559996 TMEM131LA2VDJ0 1609 aa13.61□□□□□ -0.23
HERC1-206ENST00000559996 POLA2Q14181 598 aa13.61□□□□□ -0.23
HERC1-206ENST00000559996 ADGRB3O60242 1522 aa13.6□□□□□ -0.23
HERC1-206ENST00000559996 PPP1R15AO75807 674 aaPredicted RBP13.6□□□□□ -0.23
HERC1-206ENST00000559996 RGL3Q3MIN7 710 aa13.6□□□□□ -0.23
HERC1-206ENST00000559996 A2ML1A8K2U0 1454 aa13.6□□□□□ -0.23
HERC1-206ENST00000559996 NLRP1Q9C000 1473 aa13.59□□□□□ -0.23
HERC1-206ENST00000559996 KIF1BO60333 1816 aa13.59□□□□□ -0.23
HERC1-206ENST00000559996 MYO5BQ9ULV0 1848 aa13.58□□□□□ -0.24
HERC1-206ENST00000559996 NBPF8Q3BBV2 869 aa13.57□□□□□ -0.24
HERC1-206ENST00000559996 FOXD4L1Q9NU39 408 aa13.57□□□□□ -0.24
HERC1-206ENST00000559996 UBR1Q8IWV7 1749 aa13.56□□□□□ -0.24
HERC1-206ENST00000559996 CHGAP10645 457 aaKnown RBP13.56□□□□□ -0.24
HERC1-206ENST00000559996 DCAF11Q8TEB1 546 aa13.56□□□□□ -0.24
HERC1-206ENST00000559996 MYO3AQ8NEV4 1616 aa13.56□□□□□ -0.24
HERC1-206ENST00000559996 KDM5AP29375 1690 aaKnown RBP13.56□□□□□ -0.24
HERC1-206ENST00000559996 TONSLQ96HA7 1378 aa13.56□□□□□ -0.24
HERC1-206ENST00000559996 RPGRIP1LQ68CZ1 1315 aa13.55□□□□□ -0.24
HERC1-206ENST00000559996 ZEB1P37275 1124 aaPredicted RBP13.54□□□□□ -0.24
HERC1-206ENST00000559996 ADGRF5Q8IZF2 1346 aa13.54□□□□□ -0.24
HERC1-206ENST00000559996 ZFYVE9O95405 1425 aa13.54□□□□□ -0.24
HERC1-206ENST00000559996 NEXMIFQ5QGS0 1516 aa13.54□□□□□ -0.24
HERC1-206ENST00000559996 IFT172Q9UG01 1749 aa13.53□□□□□ -0.24
HERC1-206ENST00000559996 LTKP29376 864 aa13.53□□□□□ -0.24
HERC1-206ENST00000559996 RBM42Q9BTD8 480 aaKnown RBP13.53□□□□□ -0.24
HERC1-206ENST00000559996 KDM2AQ9Y2K7 1162 aa13.53□□□□□ -0.24
HERC1-206ENST00000559996 UHRF1BP1Q6BDS2 1440 aa13.53□□□□□ -0.24
HERC1-206ENST00000559996 ARHGAP23Q9P227 1491 aa13.53□□□□□ -0.24
HERC1-206ENST00000559996 CEP170BQ9Y4F5 1589 aaPredicted RBP13.53□□□□□ -0.24
HERC1-206ENST00000559996 STAC3Q96MF2 364 aa13.52□□□□□ -0.25
HERC1-206ENST00000559996 TMEM2Q9UHN6 1383 aa13.52□□□□□ -0.25
HERC1-206ENST00000559996 NRXN1Q9ULB1 1477 aa13.52□□□□□ -0.25
HERC1-206ENST00000559996 ZNF142P52746 1687 aaPredicted RBP13.52□□□□□ -0.25
HERC1-206ENST00000559996 PPLO60437 1756 aa13.52□□□□□ -0.25
HERC1-206ENST00000559996 SLIT1O75093 1534 aa13.51□□□□□ -0.25
HERC1-206ENST00000559996 ZNF326Q5BKZ1 582 aaKnown RBP13.51□□□□□ -0.25
HERC1-206ENST00000559996 NUTM2DQ5VT03 806 aaPredicted RBP13.51□□□□□ -0.25
HERC1-206ENST00000559996 THEMISQ8N1K5 641 aaPredicted RBP13.51□□□□□ -0.25
HERC1-206ENST00000559996 RIMS2Q9UQ26 1411 aa13.5□□□□□ -0.25
HERC1-206ENST00000559996 STAG3Q9UJ98 1225 aa13.5□□□□□ -0.25
HERC1-206ENST00000559996 MYOM2P54296 1465 aa13.49□□□□□ -0.25
HERC1-206ENST00000559996 PRAG1Q86YV5 1406 aa13.49□□□□□ -0.25
HERC1-206ENST00000559996 VGFO15240 615 aaPredicted RBP13.48□□□□□ -0.25
HERC1-206ENST00000559996 LMTK3Q96Q04 1460 aa13.48□□□□□ -0.25
HERC1-206ENST00000559996 ATF5Q9Y2D1 282 aaPredicted RBP13.47□□□□□ -0.25
HERC1-206ENST00000559996 NBPF1Q3BBV0 1214 aa13.46□□□□□ -0.25
HERC1-206ENST00000559996 PIK3C2GO75747 1445 aa13.46□□□□□ -0.26
HERC1-206ENST00000559996 CFAP70Q5T0N1 1121 aa13.45□□□□□ -0.26
HERC1-206ENST00000559996 TXNDC2Q86VQ3 553 aa13.45□□□□□ -0.26
HERC1-206ENST00000559996 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.45□□□□□ -0.26
HERC1-206ENST00000559996 C14orf93Q9H972 538 aaKnown RBP13.45□□□□□ -0.26
HERC1-206ENST00000559996 HSPA2P54652 639 aa13.44□□□□□ -0.26
HERC1-206ENST00000559996 MED14O60244 1454 aa13.43□□□□□ -0.26
HERC1-206ENST00000559996 NRXN3Q9Y4C0 1643 aa13.43□□□□□ -0.26
HERC1-206ENST00000559996 ADAMTS13Q76LX8 1427 aa13.42□□□□□ -0.26
HERC1-206ENST00000559996 HDGFP51858 240 aaKnown RBP13.42□□□□□ -0.26
HERC1-206ENST00000559996 ANKLE2Q86XL3 938 aa13.42□□□□□ -0.26
HERC1-206ENST00000559996 PLEKHG1Q9ULL1 1385 aa13.42□□□□□ -0.26
HERC1-206ENST00000559996 TRPM1Q7Z4N2 1603 aa13.42□□□□□ -0.26
HERC1-206ENST00000559996 NCKAP5LQ9HCH0 1330 aa13.41□□□□□ -0.26
HERC1-206ENST00000559996 GPRASP1Q5JY77 1395 aa13.41□□□□□ -0.26
HERC1-206ENST00000559996 SCAF11Q99590 1463 aaKnown RBP13.41□□□□□ -0.26
HERC1-206ENST00000559996 ALKQ9UM73 1620 aa13.4□□□□□ -0.26
HERC1-206ENST00000559996 EID1Q9Y6B2 187 aa13.4□□□□□ -0.26
HERC1-206ENST00000559996 RALGAPBQ86X10 1494 aa13.4□□□□□ -0.26
HERC1-206ENST00000559996 SETBP1Q9Y6X0 1596 aa13.4□□□□□ -0.26
HERC1-206ENST00000559996 SETD1AO15047 1707 aaKnown RBP13.39□□□□□ -0.27
HERC1-206ENST00000559996 ADGRB1O14514 1584 aa13.39□□□□□ -0.27
HERC1-206ENST00000559996 KIAA1210Q9ULL0 1709 aa13.39□□□□□ -0.27
HERC1-206ENST00000559996 ASXL1Q8IXJ9 1541 aa13.39□□□□□ -0.27
HERC1-206ENST00000559996 STRCQ7RTU9 1775 aa13.38□□□□□ -0.27
HERC1-206ENST00000559996 TMEM132EQ6IEE7 984 aa13.38□□□□□ -0.27
HERC1-206ENST00000559996 TBX22Q9Y458 520 aa13.38□□□□□ -0.27
HERC1-206ENST00000559996 METP08581 1390 aa13.37□□□□□ -0.27
HERC1-206ENST00000559996 IQGAP1P46940 1657 aa13.37□□□□□ -0.27
HERC1-206ENST00000559996 SLC26A8Q96RN1 970 aa13.36□□□□□ -0.27
HERC1-206ENST00000559996 ZBTB22O15209 634 aa13.35□□□□□ -0.27
HERC1-206ENST00000559996 NPHP4O75161 1426 aaPredicted RBP13.35□□□□□ -0.27
HERC1-206ENST00000559996 PTPRUQ92729 1446 aa13.35□□□□□ -0.27
HERC1-206ENST00000559996 ROCK2O75116 1388 aaKnown RBP13.34□□□□□ -0.27
HERC1-206ENST00000559996 POLR1AO95602 1720 aaPredicted RBP13.33□□□□□ -0.27
HERC1-206ENST00000559996 CARD11Q9BXL7 1154 aa13.33□□□□□ -0.28
HERC1-206ENST00000559996 LAMC1P11047 1609 aa13.32□□□□□ -0.28
HERC1-206ENST00000559996 HSPA5P11021 654 aaKnown RBP13.31□□□□□ -0.28
HERC1-206ENST00000559996 ABCC11Q96J66 1382 aa13.31□□□□□ -0.28
HERC1-206ENST00000559996 YTHDC2Q9H6S0 1430 aaKnown RBP13.3□□□□□ -0.28
HERC1-206ENST00000559996 CHRDL2Q6WN34 429 aa13.3□□□□□ -0.28
HERC1-206ENST00000559996 HIRIP3Q9BW71 556 aaPredicted RBP13.3□□□□□ -0.28
HERC1-206ENST00000559996 LRPPRCP42704 1394 aaKnown RBP13.3□□□□□ -0.28
HERC1-206ENST00000559996 DIP2AQ14689 1571 aa13.29□□□□□ -0.28
HERC1-206ENST00000559996 BCANQ96GW7 911 aa13.29□□□□□ -0.28
HERC1-206ENST00000559996 TRAK1Q9UPV9 953 aa13.29□□□□□ -0.28
HERC1-206ENST00000559996 ZBTB12Q9Y330 459 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms