RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 AEBP2Q6ZN18 517 aaPredicted RBP23.84■■□□□ 1.41
HERC1-206ENST00000559996 CHIC1Q5VXU3 224 aa22.51■■□□□ 1.19
HERC1-206ENST00000559996 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
HERC1-206ENST00000559996 SENP3Q9H4L4 574 aaPredicted RBP20.34■□□□□ 0.85
HERC1-206ENST00000559996 PHF23Q9BUL5 403 aaPredicted RBP20.06■□□□□ 0.8
HERC1-206ENST00000559996 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
HERC1-206ENST00000559996 FOXD1Q16676 465 aa18.98■□□□□ 0.63
HERC1-206ENST00000559996 ABCC9O60706 1549 aa18.75■□□□□ 0.59
HERC1-206ENST00000559996 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
HERC1-206ENST00000559996 DCAF1Q9Y4B6 1507 aa18.38■□□□□ 0.53
HERC1-206ENST00000559996 DCAF8L2P0C7V8 631 aa18.36■□□□□ 0.53
HERC1-206ENST00000559996 MYO15BQ96JP2 1530 aa18.31■□□□□ 0.52
HERC1-206ENST00000559996 NACADO15069 1562 aa18.25■□□□□ 0.51
HERC1-206ENST00000559996 RB1CC1Q8TDY2 1594 aa18.15■□□□□ 0.5
HERC1-206ENST00000559996 PLPPR3Q6T4P5 718 aa17.94■□□□□ 0.46
HERC1-206ENST00000559996 SCRIBQ14160 1630 aa17.83■□□□□ 0.44
HERC1-206ENST00000559996 UNC13AQ9UPW8 1703 aa17.81■□□□□ 0.44
HERC1-206ENST00000559996 MSH5O43196 834 aa17.78■□□□□ 0.44
HERC1-206ENST00000559996 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.44
HERC1-206ENST00000559996 PIAS4Q8N2W9 510 aaPredicted RBP17.76■□□□□ 0.43
HERC1-206ENST00000559996 BICRAQ9NZM4 1560 aa17.7■□□□□ 0.42
HERC1-206ENST00000559996 PPP6R1Q9UPN7 881 aa17.67■□□□□ 0.42
HERC1-206ENST00000559996 PABPN1Q86U42 306 aaKnown RBP eCLIP17.65■□□□□ 0.42
HERC1-206ENST00000559996 ADRA2BP18089 450 aa17.64■□□□□ 0.41
HERC1-206ENST00000559996 POTEDQ86YR6 584 aa17.57■□□□□ 0.4
HERC1-206ENST00000559996 CECR2Q9BXF3 1484 aa17.32■□□□□ 0.36
HERC1-206ENST00000559996 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
HERC1-206ENST00000559996 EIF4G1Q04637 1599 aaKnown RBP17.14■□□□□ 0.33
HERC1-206ENST00000559996 BAZ1AQ9NRL2 1556 aaPredicted RBP17.13■□□□□ 0.33
HERC1-206ENST00000559996 SMARCA4P51532 1647 aa17.11■□□□□ 0.33
HERC1-206ENST00000559996 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
HERC1-206ENST00000559996 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
HERC1-206ENST00000559996 CC2D2AQ9P2K1 1620 aa16.98■□□□□ 0.31
HERC1-206ENST00000559996 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
HERC1-206ENST00000559996 PEG3Q9GZU2 1588 aa16.97■□□□□ 0.31
HERC1-206ENST00000559996 WIZO95785 1651 aa16.96■□□□□ 0.31
HERC1-206ENST00000559996 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
HERC1-206ENST00000559996 NCAPD3P42695 1498 aa16.91■□□□□ 0.3
HERC1-206ENST00000559996 SMARCA2P51531 1590 aa16.88■□□□□ 0.29
HERC1-206ENST00000559996 HMGXB3Q12766 1538 aa16.79■□□□□ 0.28
HERC1-206ENST00000559996 BAZ1BQ9UIG0 1483 aaKnown RBP16.77■□□□□ 0.28
HERC1-206ENST00000559996 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
HERC1-206ENST00000559996 CCDC88BA6NC98 1476 aa16.63■□□□□ 0.25
HERC1-206ENST00000559996 CADPSQ9ULU8 1353 aa16.42■□□□□ 0.22
HERC1-206ENST00000559996 CFTRP13569 1480 aa16.42■□□□□ 0.22
HERC1-206ENST00000559996 NESP48681 1621 aa16.39■□□□□ 0.21
HERC1-206ENST00000559996 LAMC3Q9Y6N6 1575 aa16.32■□□□□ 0.2
HERC1-206ENST00000559996 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
HERC1-206ENST00000559996 PRDM2Q13029 1718 aa16.21■□□□□ 0.19
HERC1-206ENST00000559996 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
HERC1-206ENST00000559996 PDS5BQ9NTI5 1447 aa16.19■□□□□ 0.18
HERC1-206ENST00000559996 KIF21AQ7Z4S6 1674 aa16.14■□□□□ 0.17
HERC1-206ENST00000559996 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
HERC1-206ENST00000559996 DMRT2Q9Y5R5 561 aa16.1■□□□□ 0.17
HERC1-206ENST00000559996 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
HERC1-206ENST00000559996 SCAF1Q9H7N4 1312 aaKnown RBP16.09■□□□□ 0.17
HERC1-206ENST00000559996 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
HERC1-206ENST00000559996 CUX1P39880 1505 aa16.04■□□□□ 0.16
HERC1-206ENST00000559996 WRNQ14191 1432 aaPredicted RBP eCLIP16.04■□□□□ 0.16
HERC1-206ENST00000559996 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
HERC1-206ENST00000559996 SYNJ1O43426 1573 aa16.01■□□□□ 0.15
HERC1-206ENST00000559996 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
HERC1-206ENST00000559996 THOC2Q8NI27 1593 aaKnown RBP16■□□□□ 0.15
HERC1-206ENST00000559996 TOPBP1Q92547 1522 aa16■□□□□ 0.15
HERC1-206ENST00000559996 TOP2BQ02880 1626 aa15.97■□□□□ 0.15
HERC1-206ENST00000559996 DNMBPQ6XZF7 1577 aa15.97■□□□□ 0.15
HERC1-206ENST00000559996 WDR62O43379 1518 aa15.96■□□□□ 0.15
HERC1-206ENST00000559996 BIVM-ERCC5R4GMW8 1640 aa15.96■□□□□ 0.15
HERC1-206ENST00000559996 TRIM41Q8WV44 630 aa15.93■□□□□ 0.14
HERC1-206ENST00000559996 POLA1P09884 1462 aaPredicted RBP15.9■□□□□ 0.14
HERC1-206ENST00000559996 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
HERC1-206ENST00000559996 CUX2O14529 1486 aa15.89■□□□□ 0.13
HERC1-206ENST00000559996 RAD54L2Q9Y4B4 1467 aa15.85■□□□□ 0.13
HERC1-206ENST00000559996 SOGA1O94964 1423 aa15.84■□□□□ 0.13
HERC1-206ENST00000559996 TARBP1Q13395 1621 aaKnown RBP15.81■□□□□ 0.12
HERC1-206ENST00000559996 ABCA10Q8WWZ4 1543 aa15.78■□□□□ 0.12
HERC1-206ENST00000559996 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.11
HERC1-206ENST00000559996 IFT140Q96RY7 1462 aa15.77■□□□□ 0.11
HERC1-206ENST00000559996 WDR97A6NE52 1622 aa15.74■□□□□ 0.11
HERC1-206ENST00000559996 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
HERC1-206ENST00000559996 PPP4R3CPQ6ZMV5 832 aa15.73■□□□□ 0.11
HERC1-206ENST00000559996 TDRD9Q8NDG6 1382 aaKnown RBP15.72■□□□□ 0.11
HERC1-206ENST00000559996 AQRO60306 1485 aaKnown RBP eCLIP15.7■□□□□ 0.11e-8■■■■■ 43.5
HERC1-206ENST00000559996 IGF1RP08069 1367 aa15.66■□□□□ 0.1
HERC1-206ENST00000559996 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
HERC1-206ENST00000559996 KIF27Q86VH2 1401 aa15.65■□□□□ 0.1
HERC1-206ENST00000559996 GAPVD1Q14C86 1478 aa15.64■□□□□ 0.09
HERC1-206ENST00000559996 FAM9AQ8IZU1 332 aaPredicted RBP15.62■□□□□ 0.09
HERC1-206ENST00000559996 CSRNP3Q8WYN3 585 aa15.61■□□□□ 0.09
HERC1-206ENST00000559996 EEA1Q15075 1411 aa15.6■□□□□ 0.09
HERC1-206ENST00000559996 EIF4G3O43432 1585 aaKnown RBP15.6■□□□□ 0.09
HERC1-206ENST00000559996 GRIN2BQ13224 1484 aa15.57■□□□□ 0.08
HERC1-206ENST00000559996 ERICH3Q5RHP9 1530 aa15.57■□□□□ 0.08
HERC1-206ENST00000559996 DCAF8L1A6NGE4 600 aa15.56■□□□□ 0.08
HERC1-206ENST00000559996 PBRM1Q86U86 1689 aa15.54■□□□□ 0.08
HERC1-206ENST00000559996 PRXQ9BXM0 1461 aa15.53■□□□□ 0.08
HERC1-206ENST00000559996 CARMIL1Q5VZK9 1371 aa15.51■□□□□ 0.07
HERC1-206ENST00000559996 SNAPC4Q5SXM2 1469 aa15.5■□□□□ 0.07
HERC1-206ENST00000559996 FHAD1B1AJZ9 1412 aa15.47■□□□□ 0.07
HERC1-206ENST00000559996 MAGI1Q96QZ7 1491 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms