RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ATP10BO94823 1461 aa7.22□□□□□ -1.25
LIMA1-212ENST00000552491 JPH4Q96JJ6 628 aa7.22□□□□□ -1.25
LIMA1-212ENST00000552491 BACH2Q9BYV9 841 aa7.22□□□□□ -1.25
LIMA1-212ENST00000552491 PRAG1Q86YV5 1406 aa7.22□□□□□ -1.25
LIMA1-212ENST00000552491 ABCA8O94911 1581 aa7.22□□□□□ -1.25
LIMA1-212ENST00000552491 PLEKHD1A6NEE1 506 aa7.21□□□□□ -1.25
LIMA1-212ENST00000552491 TCERG1O14776 1098 aaKnown RBP7.21□□□□□ -1.25
LIMA1-212ENST00000552491 CHMP7Q8WUX9 453 aaPredicted RBP7.21□□□□□ -1.25
LIMA1-212ENST00000552491 MAGI1Q96QZ7 1491 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-212ENST00000552491 DISP3Q9P2K9 1392 aa7.21□□□□□ -1.26
LIMA1-212ENST00000552491 TSPY4P0CV99 314 aa7.21□□□□□ -1.26
LIMA1-212ENST00000552491 TSPY10P0CW01 314 aa7.21□□□□□ -1.26
LIMA1-212ENST00000552491 RGL3Q3MIN7 710 aa7.21□□□□□ -1.26
LIMA1-212ENST00000552491 CC2D1BQ5T0F9 858 aaKnown RBP7.21□□□□□ -1.26
LIMA1-212ENST00000552491 STAG3Q9UJ98 1225 aa7.21□□□□□ -1.26
LIMA1-212ENST00000552491 FAM135AQ9P2D6 1515 aa7.2□□□□□ -1.26
LIMA1-212ENST00000552491 MS4A3Q96HJ5 214 aa7.2□□□□□ -1.26
LIMA1-212ENST00000552491 TESK2Q96S53 571 aa7.2□□□□□ -1.26
LIMA1-212ENST00000552491 LAS1LQ9Y4W2 734 aaKnown RBP7.2□□□□□ -1.26
LIMA1-212ENST00000552491 PLA2R1Q13018 1463 aa7.2□□□□□ -1.26
LIMA1-212ENST00000552491 PCDH10Q9P2E7 1040 aa7.2□□□□□ -1.26
LIMA1-212ENST00000552491 SYNJ2O15056 1496 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 PDE3BQ13370 1112 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 RTL5Q5HYW3 569 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-212ENST00000552491 C20orf194Q5TEA3 1177 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 ASTLQ6HA08 431 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-212ENST00000552491 CRBNQ96SW2 442 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 A2MP01023 1474 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 COL17A1Q9UMD9 1497 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-212ENST00000552491 FAM163AQ96GL9 167 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-212ENST00000552491 BLMP54132 1417 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-212ENST00000552491 NUP160Q12769 1436 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 CARMIL2Q6F5E8 1435 aa7.19□□□□□ -1.26
LIMA1-212ENST00000552491 ARHGEF5Q12774 1597 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 SAMD9LQ8IVG5 1584 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 ATMINO43313 823 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-212ENST00000552491 PANK3Q9H999 370 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 GPRASP1Q5JY77 1395 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 CDC42BPBQ9Y5S2 1711 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 MS4A1P11836 297 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 MNX1P50219 401 aaPredicted RBP7.18□□□□□ -1.26
LIMA1-212ENST00000552491 CCDC144AA2RUR9 1427 aa7.18□□□□□ -1.26
LIMA1-212ENST00000552491 IL27Q8NEV9 243 aa7.17□□□□□ -1.26
LIMA1-212ENST00000552491 PRDM15P57071 1507 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-212ENST00000552491 MYO5CQ9NQX4 1742 aa7.17□□□□□ -1.26
LIMA1-212ENST00000552491 NEFMP07197 916 aa7.16□□□□□ -1.26
LIMA1-212ENST00000552491 C7P10643 843 aa7.16□□□□□ -1.26
LIMA1-212ENST00000552491 SLC39A7Q92504 469 aa7.16□□□□□ -1.26
LIMA1-212ENST00000552491 CCDC141Q6ZP82 1450 aa7.16□□□□□ -1.26
LIMA1-212ENST00000552491 ERBINQ96RT1 1412 aa7.16□□□□□ -1.26
LIMA1-212ENST00000552491 ADAMTS8Q9UP79 889 aa7.15□□□□□ -1.26
LIMA1-212ENST00000552491 ZMYM4Q5VZL5 1548 aa7.15□□□□□ -1.26
LIMA1-212ENST00000552491 PLEKHH1Q9ULM0 1364 aa7.15□□□□□ -1.26
LIMA1-212ENST00000552491 KDM2BQ8NHM5 1336 aa7.15□□□□□ -1.26
LIMA1-212ENST00000552491 LAMC1P11047 1609 aa7.15□□□□□ -1.27
LIMA1-212ENST00000552491 WASHC2CQ9Y4E1 1318 aa7.15□□□□□ -1.27
LIMA1-212ENST00000552491 NPM1P06748 294 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMA1-212ENST00000552491 MAGI2Q86UL8 1455 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 PREX2Q70Z35 1606 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 INSRP06213 1382 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 UNC13BO14795 1591 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 SYCP2Q9BX26 1530 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 PLEKHH2Q8IVE3 1493 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 SLC4A3P48751 1232 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 DUSP27Q5VZP5 1158 aa7.14□□□□□ -1.27
LIMA1-212ENST00000552491 WDR7Q9Y4E6 1490 aa7.13□□□□□ -1.27
LIMA1-212ENST00000552491 TMF1P82094 1093 aa7.13□□□□□ -1.27
LIMA1-212ENST00000552491 MAMSTRQ6ZN01 415 aa7.13□□□□□ -1.27
LIMA1-212ENST00000552491 RTN4Q9NQC3 1192 aaKnown RBP7.13□□□□□ -1.27
LIMA1-212ENST00000552491 USP35Q9P2H5 1018 aa7.13□□□□□ -1.27
LIMA1-212ENST00000552491 PPP2R1AP30153 589 aa7.12□□□□□ -1.27
LIMA1-212ENST00000552491 ATN1P54259 1190 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-212ENST00000552491 ANO8Q9HCE9 1232 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-212ENST00000552491 IQGAP3Q86VI3 1631 aa7.12□□□□□ -1.27
LIMA1-212ENST00000552491 TTC37Q6PGP7 1564 aa7.12□□□□□ -1.27
LIMA1-212ENST00000552491 ZNF521Q96K83 1311 aa7.12□□□□□ -1.27
LIMA1-212ENST00000552491 RNF17Q9BXT8 1623 aaKnown RBP7.12□□□□□ -1.27
LIMA1-212ENST00000552491 AMER1Q5JTC6 1135 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-212ENST00000552491 SPDYE4A6NLX3 237 aa7.11□□□□□ -1.27
LIMA1-212ENST00000552491 C8orf34Q49A92 452 aa7.11□□□□□ -1.27
LIMA1-212ENST00000552491 MAST1Q9Y2H9 1570 aa7.11□□□□□ -1.27
LIMA1-212ENST00000552491 PPM1GO15355 546 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-212ENST00000552491 RSPH4AQ5TD94 716 aa7.11□□□□□ -1.27
LIMA1-212ENST00000552491 EIF2AK4Q9P2K8 1649 aaKnown RBP7.11□□□□□ -1.27
LIMA1-212ENST00000552491 POTEFA5A3E0 1075 aa7.1□□□□□ -1.27
LIMA1-212ENST00000552491 SCUBE2Q9NQ36 999 aa7.1□□□□□ -1.27
LIMA1-212ENST00000552491 ARHGAP5Q13017 1502 aa7.1□□□□□ -1.27
LIMA1-212ENST00000552491 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.1□□□□□ -1.27
LIMA1-212ENST00000552491 ATP10AO60312 1499 aa7.1□□□□□ -1.27
LIMA1-212ENST00000552491 NFKBIBQ15653 356 aa7.1□□□□□ -1.27
LIMA1-212ENST00000552491 CENPQQ7L2Z9 268 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-212ENST00000552491 CCDC146Q8IYE0 955 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 TSPYL2Q9H2G4 693 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-212ENST00000552491 DNAJC5Q9H3Z4 198 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 IQGAP1P46940 1657 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 PLXNC1O60486 1568 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 GOLGA2Q08379 1002 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 DDRGK1Q96HY6 314 aa7.09□□□□□ -1.27
LIMA1-212ENST00000552491 MADDQ8WXG6 1647 aa7.08□□□□□ -1.28
LIMA1-212ENST00000552491 SLFN5Q08AF3 891 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms