RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 AEBP2Q6ZN18 517 aaPredicted RBP14.97□□□□□ -0.01
LIMA1-212ENST00000552491 CHIC1Q5VXU3 224 aa13.89□□□□□ -0.19
LIMA1-212ENST00000552491 SENP3Q9H4L4 574 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-212ENST00000552491 PHF23Q9BUL5 403 aaPredicted RBP12.57□□□□□ -0.4
LIMA1-212ENST00000552491 FOXD1Q16676 465 aa11.98□□□□□ -0.49
LIMA1-212ENST00000552491 POTEDQ86YR6 584 aa11.71□□□□□ -0.53
LIMA1-212ENST00000552491 MSH5O43196 834 aa11.28□□□□□ -0.6
LIMA1-212ENST00000552491 PIAS4Q8N2W9 510 aaPredicted RBP11.1□□□□□ -0.63
LIMA1-212ENST00000552491 PPP6R1Q9UPN7 881 aa10.96□□□□□ -0.65
LIMA1-212ENST00000552491 NISCHQ9Y2I1 1504 aa10.9□□□□□ -0.66
LIMA1-212ENST00000552491 ADRA2BP18089 450 aa10.9□□□□□ -0.67
LIMA1-212ENST00000552491 PLPPR3Q6T4P5 718 aa10.83□□□□□ -0.68
LIMA1-212ENST00000552491 MAPK8IP2Q13387 824 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-212ENST00000552491 DMRT2Q9Y5R5 561 aa10.05□□□□□ -0.8
LIMA1-212ENST00000552491 CACNB1Q02641 598 aaPredicted RBP9.96□□□□□ -0.81
LIMA1-212ENST00000552491 SCAF1Q9H7N4 1312 aaKnown RBP9.86□□□□□ -0.83
LIMA1-212ENST00000552491 DCAF8L1A6NGE4 600 aa9.73□□□□□ -0.85
LIMA1-212ENST00000552491 RNF39Q9H2S5 420 aa9.63□□□□□ -0.87
LIMA1-212ENST00000552491 HOXD11P31277 338 aaPredicted RBP9.53□□□□□ -0.88
LIMA1-212ENST00000552491 PPP4R3CPQ6ZMV5 832 aa9.48□□□□□ -0.89
LIMA1-212ENST00000552491 SHROOM4Q9ULL8 1493 aa9.47□□□□□ -0.89
LIMA1-212ENST00000552491 C1QBPQ07021 282 aaKnown RBP9.43□□□□□ -0.9
LIMA1-212ENST00000552491 RNF216Q9NWF9 866 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-212ENST00000552491 CNKSR2Q8WXI2 1034 aa9.35□□□□□ -0.91
LIMA1-212ENST00000552491 SUPT5HO00267 1087 aaKnown RBP9.33□□□□□ -0.92
LIMA1-212ENST00000552491 ZCCHC6Q5VYS8 1495 aaKnown RBP9.25□□□□□ -0.93
LIMA1-212ENST00000552491 DNAJC5BQ9UF47 199 aa9.19□□□□□ -0.94
LIMA1-212ENST00000552491 MYO15BQ96JP2 1530 aa9.19□□□□□ -0.94
LIMA1-212ENST00000552491 CCDC180Q9P1Z9 1646 aa9.15□□□□□ -0.94
LIMA1-212ENST00000552491 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.11□□□□□ -0.958e-10■■■□□ 17.1
LIMA1-212ENST00000552491 POTEHQ6S545 545 aa9.09□□□□□ -0.95
LIMA1-212ENST00000552491 HRCP23327 699 aa9.08□□□□□ -0.96
LIMA1-212ENST00000552491 DCAF8L2P0C7V8 631 aa9.04□□□□□ -0.96
LIMA1-212ENST00000552491 PCGF6Q9BYE7 350 aa9□□□□□ -0.97
LIMA1-212ENST00000552491 PPARGC1BQ86YN6 1023 aaKnown RBP8.94□□□□□ -0.98
LIMA1-212ENST00000552491 NCBP3Q53F19 620 aaKnown RBP8.94□□□□□ -0.98
LIMA1-212ENST00000552491 SPINK5Q9NQ38 1064 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-212ENST00000552491 LOC105371045A0A1W2PR82 267 aa8.91□□□□□ -0.98
LIMA1-212ENST00000552491 DSG3P32926 999 aa8.91□□□□□ -0.98
LIMA1-212ENST00000552491 U3KPZ7 1027 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-212ENST00000552491 DCAF1Q9Y4B6 1507 aa8.9□□□□□ -0.98
LIMA1-212ENST00000552491 NPM3O75607 178 aaKnown RBP8.89□□□□□ -0.99
LIMA1-212ENST00000552491 CAPN15O75808 1086 aa8.88□□□□□ -0.99
LIMA1-212ENST00000552491 ABCC9O60706 1549 aa8.75□□□□□ -1.01
LIMA1-212ENST00000552491 TRIM26Q12899 539 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-212ENST00000552491 RSF1Q96T23 1441 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-212ENST00000552491 ABCB7O75027 752 aa8.68□□□□□ -1.02
LIMA1-212ENST00000552491 SCRIBQ14160 1630 aa8.68□□□□□ -1.02
LIMA1-212ENST00000552491 TRHP20396 242 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-212ENST00000552491 RB1CC1Q8TDY2 1594 aa8.65□□□□□ -1.02
LIMA1-212ENST00000552491 TRIM41Q8WV44 630 aa8.64□□□□□ -1.03
LIMA1-212ENST00000552491 FAM9AQ8IZU1 332 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-212ENST00000552491 SLC4A2P04920 1241 aa8.6□□□□□ -1.03
LIMA1-212ENST00000552491 EHMT2Q96KQ7 1210 aa8.59□□□□□ -1.03
LIMA1-212ENST00000552491 ZEB1P37275 1124 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-212ENST00000552491 ZNF219Q9P2Y4 722 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-212ENST00000552491 CECR2Q9BXF3 1484 aa8.55□□□□□ -1.04
LIMA1-212ENST00000552491 MROH2BQ7Z745 1585 aa8.52□□□□□ -1.05
LIMA1-212ENST00000552491 APLP2Q06481 763 aa8.49□□□□□ -1.05
LIMA1-212ENST00000552491 WIZO95785 1651 aa8.49□□□□□ -1.05
LIMA1-212ENST00000552491 CHRDL2Q6WN34 429 aa8.47□□□□□ -1.05
LIMA1-212ENST00000552491 RBM42Q9BTD8 480 aaKnown RBP8.45□□□□□ -1.06
LIMA1-212ENST00000552491 NACADO15069 1562 aa8.43□□□□□ -1.06
LIMA1-212ENST00000552491 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-212ENST00000552491 EIF4G1Q04637 1599 aaKnown RBP8.42□□□□□ -1.06
LIMA1-212ENST00000552491 KCNA4P22459 653 aa8.42□□□□□ -1.06
LIMA1-212ENST00000552491 HNRNPUL2Q1KMD3 747 aaKnown RBP8.42□□□□□ -1.06
LIMA1-212ENST00000552491 BAZ1AQ9NRL2 1556 aaPredicted RBP8.4□□□□□ -1.07
LIMA1-212ENST00000552491 SAMD1Q6SPF0 538 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-212ENST00000552491 PELP1Q8IZL8 1130 aaKnown RBP8.37□□□□□ -1.07
LIMA1-212ENST00000552491 CCER1Q8TC90 406 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-212ENST00000552491 ABCC8Q09428 1581 aa8.36□□□□□ -1.07
LIMA1-212ENST00000552491 CCDC88BA6NC98 1476 aa8.35□□□□□ -1.07
LIMA1-212ENST00000552491 POLA2Q14181 598 aa8.34□□□□□ -1.07
LIMA1-212ENST00000552491 TTBK1Q5TCY1 1321 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-212ENST00000552491 SP7Q8TDD2 431 aaPredicted RBP8.34□□□□□ -1.07
LIMA1-212ENST00000552491 NEUROD1Q13562 356 aa8.33□□□□□ -1.08
LIMA1-212ENST00000552491 ACIN1Q9UKV3 1341 aaKnown RBP8.32□□□□□ -1.08
LIMA1-212ENST00000552491 WRNQ14191 1432 aaPredicted RBP eCLIP8.31□□□□□ -1.08
LIMA1-212ENST00000552491 SOGA1O94964 1423 aa8.3□□□□□ -1.08
LIMA1-212ENST00000552491 TOP2AP11388 1531 aaKnown RBP8.3□□□□□ -1.08
LIMA1-212ENST00000552491 CEP162Q5TB80 1403 aa8.29□□□□□ -1.08
LIMA1-212ENST00000552491 SMARCA2P51531 1590 aa8.29□□□□□ -1.08
LIMA1-212ENST00000552491 DIEXFQ68CQ4 756 aaKnown RBP8.28□□□□□ -1.08
LIMA1-212ENST00000552491 RUSC2Q8N2Y8 1516 aa8.28□□□□□ -1.08
LIMA1-212ENST00000552491 SMARCA4P51532 1647 aa8.27□□□□□ -1.09
LIMA1-212ENST00000552491 TNIKQ9UKE5 1360 aa8.25□□□□□ -1.09
LIMA1-212ENST00000552491 GTF3C3Q9Y5Q9 886 aa8.24□□□□□ -1.09
LIMA1-212ENST00000552491 UNC13AQ9UPW8 1703 aa8.23□□□□□ -1.09
LIMA1-212ENST00000552491 CSRNP3Q8WYN3 585 aa8.23□□□□□ -1.09
LIMA1-212ENST00000552491 UBTFP17480 764 aaKnown RBP8.21□□□□□ -1.09
LIMA1-212ENST00000552491 PIP4P2Q8N4L2 257 aa8.19□□□□□ -1.1
LIMA1-212ENST00000552491 AKT1S1Q96B36 256 aa8.19□□□□□ -1.1
LIMA1-212ENST00000552491 CENPBP07199 599 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-212ENST00000552491 EEA1Q15075 1411 aa8.18□□□□□ -1.1
LIMA1-212ENST00000552491 ZNF316A6NFI3 1004 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-212ENST00000552491 MYCNP04198 464 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-212ENST00000552491 GOLGA3Q08378 1498 aa8.17□□□□□ -1.1
LIMA1-212ENST00000552491 HAX1O00165 279 aa8.16□□□□□ -1.1
LIMA1-212ENST00000552491 REM2Q8IYK8 340 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms