RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 KCTD12Q96CX2 325 aaKnown RBP7.45□□□□□ -1.22
SF3B1-208ENST00000470268 KCNK17Q96T54 332 aa7.45□□□□□ -1.22
SF3B1-208ENST00000470268 NCKAP5LQ9HCH0 1330 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 RIMBP3CA6NJZ7 1639 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 RIMBP3BA6NNM3 1639 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 RIMBP3Q9UFD9 1639 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 PCF11O94913 1555 aaKnown RBP7.44□□□□□ -1.22
SF3B1-208ENST00000470268 PDE4AP27815 886 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 BCL2L12Q9HB09 334 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 VPS9D1Q9Y2B5 631 aa7.44□□□□□ -1.22
SF3B1-208ENST00000470268 CASKIN1Q8WXD9 1431 aa7.43□□□□□ -1.22
SF3B1-208ENST00000470268 ARID3CA6NKF2 412 aa7.43□□□□□ -1.22
SF3B1-208ENST00000470268 E2F4Q16254 413 aa7.43□□□□□ -1.22
SF3B1-208ENST00000470268 CRISPLD2Q9H0B8 497 aa7.43□□□□□ -1.22
SF3B1-208ENST00000470268 ABCA8O94911 1581 aa7.43□□□□□ -1.22
SF3B1-208ENST00000470268 UACAQ9BZF9 1416 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 NUP153P49790 1475 aaKnown RBP7.42□□□□□ -1.22
SF3B1-208ENST00000470268 MFSD10Q14728 455 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 CYB5RLQ6IPT4 315 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 ZNF454Q8N9F8 522 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 ARHGEF1Q92888 912 aaKnown RBP7.42□□□□□ -1.22
SF3B1-208ENST00000470268 ATP1B4Q9UN42 357 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-208ENST00000470268 RGS20O76081 388 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 PPP1R15BQ5SWA1 713 aa7.42□□□□□ -1.22
SF3B1-208ENST00000470268 FYCO1Q9BQS8 1478 aa7.41□□□□□ -1.22
SF3B1-208ENST00000470268 IFFO2Q5TF58 517 aa7.41□□□□□ -1.22
SF3B1-208ENST00000470268 RAPGEF6Q8TEU7 1601 aa7.41□□□□□ -1.22
SF3B1-208ENST00000470268 PTPREP23469 700 aa7.4□□□□□ -1.22
SF3B1-208ENST00000470268 FOSBP53539 338 aa7.4□□□□□ -1.22
SF3B1-208ENST00000470268 LARP6Q9BRS8 491 aaKnown RBP7.4□□□□□ -1.22
SF3B1-208ENST00000470268 UPF1Q92900 1129 aaKnown RBP eCLIP7.4□□□□□ -1.23
SF3B1-208ENST00000470268 ANO8Q9HCE9 1232 aaPredicted RBP7.4□□□□□ -1.23
SF3B1-208ENST00000470268 CDK13Q14004 1512 aaKnown RBP7.4□□□□□ -1.23
SF3B1-208ENST00000470268 ABCC2Q92887 1545 aa7.4□□□□□ -1.23
SF3B1-208ENST00000470268 KANK4Q5T7N3 995 aaPredicted RBP7.39□□□□□ -1.23
SF3B1-208ENST00000470268 PPARGC1BQ86YN6 1023 aaKnown RBP7.39□□□□□ -1.23
SF3B1-208ENST00000470268 UHRF1BP1LA0JNW5 1464 aa7.39□□□□□ -1.23
SF3B1-208ENST00000470268 ATP10BO94823 1461 aa7.39□□□□□ -1.23
SF3B1-208ENST00000470268 EPRSP07814 1512 aaKnown RBP7.39□□□□□ -1.23
SF3B1-208ENST00000470268 ADCY10Q96PN6 1610 aa7.39□□□□□ -1.23
SF3B1-208ENST00000470268 DDX27Q96GQ7 796 aaKnown RBP7.39□□□□□ -1.23
SF3B1-208ENST00000470268 LRRIQ1Q96JM4 1722 aa7.39□□□□□ -1.23
SF3B1-208ENST00000470268 HECW1Q76N89 1606 aa7.38□□□□□ -1.23
SF3B1-208ENST00000470268 GOLGA8CPA6NN73 597 aa7.38□□□□□ -1.23
SF3B1-208ENST00000470268 KDM5BQ9UGL1 1544 aa7.38□□□□□ -1.23
SF3B1-208ENST00000470268 BHMG1C9JSJ3 638 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-208ENST00000470268 ARIH1Q9Y4X5 557 aaPredicted RBP7.37□□□□□ -1.23
SF3B1-208ENST00000470268 TIAM1Q13009 1591 aa7.37□□□□□ -1.23
SF3B1-208ENST00000470268 MAGI3Q5TCQ9 1506 aa7.36□□□□□ -1.23
SF3B1-208ENST00000470268 PTPN5P54829 565 aa7.36□□□□□ -1.23
SF3B1-208ENST00000470268 CAMK2BQ13554 666 aa7.36□□□□□ -1.23
SF3B1-208ENST00000470268 ZBED2Q9BTP6 218 aa7.36□□□□□ -1.23
SF3B1-208ENST00000470268 EVI5O60447 810 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 THSD4Q6ZMP0 1018 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 MRPL50Q8N5N7 158 aaKnown RBP7.35□□□□□ -1.23
SF3B1-208ENST00000470268 ZDHHC16Q969W1 377 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 NBPF3Q9H094 633 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 MAP3K1Q13233 1512 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 CCDC18Q5T9S5 1454 aa7.35□□□□□ -1.23
SF3B1-208ENST00000470268 LRRC9Q6ZRR7 1453 aa7.34□□□□□ -1.23
SF3B1-208ENST00000470268 CFAP43Q8NDM7 1665 aa7.34□□□□□ -1.23
SF3B1-208ENST00000470268 ZCCHC11Q5TAX3 1644 aaKnown RBP7.34□□□□□ -1.24
SF3B1-208ENST00000470268 WNT2BQ93097 391 aa7.34□□□□□ -1.24
SF3B1-208ENST00000470268 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.33□□□□□ -1.24
SF3B1-208ENST00000470268 MTUS2Q5JR59 1369 aa7.33□□□□□ -1.24
SF3B1-208ENST00000470268 PLEKHD1A6NEE1 506 aa7.32□□□□□ -1.24
SF3B1-208ENST00000470268 TULP1O00294 542 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-208ENST00000470268 MAP3K9P80192 1104 aa7.32□□□□□ -1.24
SF3B1-208ENST00000470268 TROQ12816 1431 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-208ENST00000470268 ASXL2Q76L83 1435 aa7.32□□□□□ -1.24
SF3B1-208ENST00000470268 CDK11AQ9UQ88 783 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-208ENST00000470268 TESPA1A2RU30 521 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-208ENST00000470268 ADAM33Q9BZ11 813 aa7.3□□□□□ -1.24
SF3B1-208ENST00000470268 EHBP1L1Q8N3D4 1523 aa7.3□□□□□ -1.24
SF3B1-208ENST00000470268 WDR7Q9Y4E6 1490 aa7.3□□□□□ -1.24
SF3B1-208ENST00000470268 A0A0G2JS52 829 aa7.3□□□□□ -1.24
SF3B1-208ENST00000470268 LMOD2Q6P5Q4 547 aa7.3□□□□□ -1.24
SF3B1-208ENST00000470268 PHLDB1Q86UU1 1377 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 KIF14Q15058 1648 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 PPP1R3GB7ZBB8 358 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 SEMA3EO15041 775 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 MAPKBP1O60336 1514 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 NCOA2Q15596 1464 aa7.29□□□□□ -1.24
SF3B1-208ENST00000470268 FBXW7Q969H0 707 aa7.28□□□□□ -1.24
SF3B1-208ENST00000470268 RABGEF1Q9UJ41 708 aa7.28□□□□□ -1.24
SF3B1-208ENST00000470268 ABCC10Q5T3U5 1492 aa7.28□□□□□ -1.24
SF3B1-208ENST00000470268 ONECUT3O60422 494 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-208ENST00000470268 LAPTM4BQ86VI4 370 aa7.27□□□□□ -1.25
SF3B1-208ENST00000470268 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.27□□□□□ -1.25
SF3B1-208ENST00000470268 TYW1BQ6NUM6 668 aa7.27□□□□□ -1.25
SF3B1-208ENST00000470268 ANKK1Q8NFD2 765 aa7.27□□□□□ -1.25
SF3B1-208ENST00000470268 PHF14O94880 888 aa7.26□□□□□ -1.25
SF3B1-208ENST00000470268 SMYD5Q6GMV2 418 aa7.26□□□□□ -1.25
SF3B1-208ENST00000470268 IRX2Q9BZI1 471 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-208ENST00000470268 GPATCH8Q9UKJ3 1502 aaKnown RBP7.25□□□□□ -1.25
SF3B1-208ENST00000470268 NYAP1Q6ZVC0 841 aa7.25□□□□□ -1.25
SF3B1-208ENST00000470268 TTC37Q6PGP7 1564 aa7.25□□□□□ -1.25
SF3B1-208ENST00000470268 SUPT6HQ7KZ85 1726 aaKnown RBP7.25□□□□□ -1.25
SF3B1-208ENST00000470268 PCDHGA10Q9Y5H3 936 aa7.25□□□□□ -1.25
SF3B1-208ENST00000470268 EMILIN3Q9NT22 766 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms