RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 SF3A1Q15459 793 aaKnown RBP10.79□□□□□ -0.68
HPS4-209ENST00000466781 COG3Q96JB2 828 aa10.79□□□□□ -0.68
HPS4-209ENST00000466781 PES1O00541 588 aaKnown RBP10.78□□□□□ -0.68
HPS4-209ENST00000466781 FGD6Q6ZV73 1430 aa10.78□□□□□ -0.68
HPS4-209ENST00000466781 CCER2I3L3R5 266 aa10.78□□□□□ -0.68
HPS4-209ENST00000466781 CNKSR2Q8WXI2 1034 aa10.78□□□□□ -0.68
HPS4-209ENST00000466781 PHF23Q9BUL5 403 aaPredicted RBP10.78□□□□□ -0.68
HPS4-209ENST00000466781 ZNF644Q9H582 1327 aaPredicted RBP10.78□□□□□ -0.68
HPS4-209ENST00000466781 LRRC9Q6ZRR7 1453 aa10.78□□□□□ -0.68
HPS4-209ENST00000466781 RAD21O60216 631 aa10.78□□□□□ -0.68
HPS4-209ENST00000466781 GZF1Q9H116 711 aaPredicted RBP10.77□□□□□ -0.68
HPS4-209ENST00000466781 TCERG1O14776 1098 aaKnown RBP10.77□□□□□ -0.69
HPS4-209ENST00000466781 GRIN2AQ12879 1464 aa10.77□□□□□ -0.69
HPS4-209ENST00000466781 H3BQV1 296 aa10.77□□□□□ -0.69
HPS4-209ENST00000466781 IFFO2Q5TF58 517 aa10.77□□□□□ -0.69
HPS4-209ENST00000466781 AFAP1Q8N556 730 aa10.77□□□□□ -0.69
HPS4-209ENST00000466781 PHF14O94880 888 aa10.76□□□□□ -0.69
HPS4-209ENST00000466781 DHX57Q6P158 1386 aaKnown RBP10.76□□□□□ -0.69
HPS4-209ENST00000466781 URB2Q14146 1524 aaKnown RBP10.76□□□□□ -0.69
HPS4-209ENST00000466781 FBXW7Q969H0 707 aa10.76□□□□□ -0.69
HPS4-209ENST00000466781 TSR1Q2NL82 804 aaKnown RBP10.76□□□□□ -0.69
HPS4-209ENST00000466781 SYNE3Q6ZMZ3 975 aa10.76□□□□□ -0.69
HPS4-209ENST00000466781 SLKQ9H2G2 1235 aaPredicted RBP10.76□□□□□ -0.69
HPS4-209ENST00000466781 CHMP4CQ96CF2 233 aa10.75□□□□□ -0.69
HPS4-209ENST00000466781 ST18O60284 1047 aa10.75□□□□□ -0.69
HPS4-209ENST00000466781 WWC1Q8IX03 1113 aa10.75□□□□□ -0.69
HPS4-209ENST00000466781 TTC5Q8N0Z6 440 aa10.75□□□□□ -0.69
HPS4-209ENST00000466781 SUPT6HQ7KZ85 1726 aaKnown RBP10.75□□□□□ -0.69
HPS4-209ENST00000466781 TXNDC2Q86VQ3 553 aa10.74□□□□□ -0.69
HPS4-209ENST00000466781 THEMISQ8N1K5 641 aaPredicted RBP10.74□□□□□ -0.69
HPS4-209ENST00000466781 FAM184AQ8NB25 1140 aa10.74□□□□□ -0.69
HPS4-209ENST00000466781 LRRFIP1Q32MZ4 808 aaKnown RBP10.74□□□□□ -0.69
HPS4-209ENST00000466781 CENPJQ9HC77 1338 aaPredicted RBP10.74□□□□□ -0.69
HPS4-209ENST00000466781 DCAF8L1A6NGE4 600 aa10.74□□□□□ -0.69
HPS4-209ENST00000466781 SCAPERQ9BY12 1400 aa10.74□□□□□ -0.69
HPS4-209ENST00000466781 PROSER2Q86WR7 435 aaPredicted RBP10.74□□□□□ -0.69
HPS4-209ENST00000466781 PEG3Q9GZU2 1588 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 KLHL34Q8N239 644 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 ARID3AQ99856 593 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 FOXD4L1Q9NU39 408 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 RRP7AQ9Y3A4 280 aaKnown RBP10.73□□□□□ -0.69
HPS4-209ENST00000466781 ANKRD50Q9ULJ7 1429 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 CD109Q6YHK3 1445 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 KIF14Q15058 1648 aa10.73□□□□□ -0.69
HPS4-209ENST00000466781 TROQ12816 1431 aaPredicted RBP10.73□□□□□ -0.69
HPS4-209ENST00000466781 TNNT3P45378 269 aaPredicted RBP10.72□□□□□ -0.69
HPS4-209ENST00000466781 TPM1P09493 284 aa10.72□□□□□ -0.69
HPS4-209ENST00000466781 RILPL2Q969X0 211 aa10.72□□□□□ -0.69
HPS4-209ENST00000466781 GOLGA6L3A6NEY3 463 aa10.72□□□□□ -0.69
HPS4-209ENST00000466781 VPS37DQ86XT2 251 aa10.72□□□□□ -0.69
HPS4-209ENST00000466781 CGNL1Q0VF96 1302 aa10.71□□□□□ -0.69
HPS4-209ENST00000466781 RAPGEF3O95398 923 aa10.71□□□□□ -0.69
HPS4-209ENST00000466781 NEXNQ0ZGT2 675 aa10.71□□□□□ -0.7
HPS4-209ENST00000466781 CCDC47Q96A33 483 aaKnown RBP10.71□□□□□ -0.7
HPS4-209ENST00000466781 CLUAP1Q96AJ1 413 aa10.71□□□□□ -0.7
HPS4-209ENST00000466781 PANK3Q9H999 370 aa10.71□□□□□ -0.7
HPS4-209ENST00000466781 RRBP1Q9P2E9 1410 aaKnown RBP10.71□□□□□ -0.7
HPS4-209ENST00000466781 ST20-MTHFSA0A0A6YYL1 179 aa10.71□□□□□ -0.7
HPS4-209ENST00000466781 TRIM29Q14134 588 aa10.71□□□□□ -0.7
HPS4-209ENST00000466781 C9orf84Q5VXU9 1444 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 DHX16O60231 1041 aaKnown RBP10.7□□□□□ -0.7
HPS4-209ENST00000466781 SYTL4Q96C24 671 aaPredicted RBP10.7□□□□□ -0.7
HPS4-209ENST00000466781 TEFQ10587 303 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 ANKLE2Q86XL3 938 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 NGEFQ8N5V2 710 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 FBXO3Q9UK99 471 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 FOXD4L5Q5VV16 416 aaPredicted RBP10.7□□□□□ -0.7
HPS4-209ENST00000466781 FOXD4L4Q8WXT5 416 aaPredicted RBP10.7□□□□□ -0.7
HPS4-209ENST00000466781 DEKP35659 375 aaKnown RBP10.7□□□□□ -0.7
HPS4-209ENST00000466781 CCDC70Q6NSX1 233 aa10.7□□□□□ -0.7
HPS4-209ENST00000466781 CCDC43Q96MW1 224 aaKnown RBP10.69□□□□□ -0.7
HPS4-209ENST00000466781 PCMTD1Q96MG8 357 aaPredicted RBP10.69□□□□□ -0.7
HPS4-209ENST00000466781 ZNF608Q9ULD9 1512 aaPredicted RBP10.68□□□□□ -0.7
HPS4-209ENST00000466781 GPRASP1Q5JY77 1395 aa10.68□□□□□ -0.7
HPS4-209ENST00000466781 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
HPS4-209ENST00000466781 CPLX2Q6PUV4 134 aaKnown RBP10.68□□□□□ -0.7
HPS4-209ENST00000466781 CDK13Q14004 1512 aaKnown RBP10.68□□□□□ -0.7
HPS4-209ENST00000466781 MIA2Q96PC5 1412 aa10.68□□□□□ -0.7
HPS4-209ENST00000466781 GOLGA6L19H0YKK7 550 aa10.68□□□□□ -0.7
HPS4-209ENST00000466781 SETQ01105 290 aaPredicted RBP10.68□□□□□ -0.7
HPS4-209ENST00000466781 ARAP1Q96P48 1450 aa10.68□□□□□ -0.7
HPS4-209ENST00000466781 ESCO1Q5FWF5 840 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 STAC3Q96MF2 364 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 KIF21AQ7Z4S6 1674 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 PIP4K2BP78356 416 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 MCTP1Q6DN14 999 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 RBM33Q96EV2 1170 aaKnown RBP10.67□□□□□ -0.7
HPS4-209ENST00000466781 DIAPH3Q9NSV4 1193 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 PRXQ9BXM0 1461 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 APPP05067 770 aa10.67□□□□□ -0.7
HPS4-209ENST00000466781 NUTM2GQ5VZR2 741 aa10.66□□□□□ -0.7
HPS4-209ENST00000466781 C9orf78Q9NZ63 289 aaPredicted RBP10.66□□□□□ -0.7
HPS4-209ENST00000466781 BIVM-ERCC5R4GMW8 1640 aa10.66□□□□□ -0.7
HPS4-209ENST00000466781 EIF2S2P20042 333 aaKnown RBP10.66□□□□□ -0.7
HPS4-209ENST00000466781 ATP6V1DQ9Y5K8 247 aa10.66□□□□□ -0.7
HPS4-209ENST00000466781 RUFY2Q8WXA3 655 aa10.66□□□□□ -0.7
HPS4-209ENST00000466781 ERICH2A1L162 156 aa10.65□□□□□ -0.7
HPS4-209ENST00000466781 ANKRD20A12PQ8NF67 263 aa10.65□□□□□ -0.7
HPS4-209ENST00000466781 EPRSP07814 1512 aaKnown RBP10.65□□□□□ -0.7
HPS4-209ENST00000466781 BECN2A8MW95 431 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms