RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 H3BQV1 296 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 IFFO2Q5TF58 517 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 PANK3Q9H999 370 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 NLRP13Q86W25 1043 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 AFAP1Q8N556 730 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 DNMBPQ6XZF7 1577 aa11.04□□□□□ -0.64
CTNND1-208ENST00000428599 TPM1P09493 284 aa11.03□□□□□ -0.64
CTNND1-208ENST00000428599 ST18O60284 1047 aa11.03□□□□□ -0.64
CTNND1-208ENST00000428599 NOL8Q76FK4 1167 aaKnown RBP11.03□□□□□ -0.64
CTNND1-208ENST00000428599 RCAN3Q9UKA8 241 aa11.03□□□□□ -0.64
CTNND1-208ENST00000428599 TTC5Q8N0Z6 440 aa11.03□□□□□ -0.64
CTNND1-208ENST00000428599 CCDC47Q96A33 483 aaKnown RBP11.02□□□□□ -0.64
CTNND1-208ENST00000428599 COG3Q96JB2 828 aa11.02□□□□□ -0.65
CTNND1-208ENST00000428599 FAM184AQ8NB25 1140 aa11.02□□□□□ -0.65
CTNND1-208ENST00000428599 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.02□□□□□ -0.65
CTNND1-208ENST00000428599 USP47Q96K76 1375 aa11.02□□□□□ -0.65
CTNND1-208ENST00000428599 ANKRD50Q9ULJ7 1429 aa11.02□□□□□ -0.65
CTNND1-208ENST00000428599 BICRAQ9NZM4 1560 aa11.02□□□□□ -0.65
CTNND1-208ENST00000428599 GZF1Q9H116 711 aaPredicted RBP11.02□□□□□ -0.65
CTNND1-208ENST00000428599 FBXW7Q969H0 707 aa11.01□□□□□ -0.65
CTNND1-208ENST00000428599 CCDC70Q6NSX1 233 aa11.01□□□□□ -0.65
CTNND1-208ENST00000428599 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
CTNND1-208ENST00000428599 CCDC43Q96MW1 224 aaKnown RBP11.01□□□□□ -0.65
CTNND1-208ENST00000428599 SLKQ9H2G2 1235 aaPredicted RBP11.01□□□□□ -0.65
CTNND1-208ENST00000428599 CGNL1Q0VF96 1302 aa11□□□□□ -0.65
CTNND1-208ENST00000428599 CPLX2Q6PUV4 134 aaKnown RBP11□□□□□ -0.65
CTNND1-208ENST00000428599 VPS37DQ86XT2 251 aa11□□□□□ -0.65
CTNND1-208ENST00000428599 NEXNQ0ZGT2 675 aa11□□□□□ -0.65
CTNND1-208ENST00000428599 DNAJC5BQ9UF47 199 aa11□□□□□ -0.65
CTNND1-208ENST00000428599 ARAP1Q96P48 1450 aa11□□□□□ -0.65
CTNND1-208ENST00000428599 DHX16O60231 1041 aaKnown RBP11□□□□□ -0.65
CTNND1-208ENST00000428599 PHF23Q9BUL5 403 aaPredicted RBP11□□□□□ -0.65
CTNND1-208ENST00000428599 TRIM29Q14134 588 aa10.99□□□□□ -0.65
CTNND1-208ENST00000428599 EFCAB5A4FU69 1503 aa10.99□□□□□ -0.65
CTNND1-208ENST00000428599 SETQ01105 290 aaPredicted RBP10.99□□□□□ -0.65
CTNND1-208ENST00000428599 CENPJQ9HC77 1338 aaPredicted RBP10.98□□□□□ -0.65
CTNND1-208ENST00000428599 GOLGA6L3A6NEY3 463 aa10.98□□□□□ -0.65
CTNND1-208ENST00000428599 TEFQ10587 303 aa10.98□□□□□ -0.65
CTNND1-208ENST00000428599 FBXO3Q9UK99 471 aa10.98□□□□□ -0.65
CTNND1-208ENST00000428599 LAMC3Q9Y6N6 1575 aa10.98□□□□□ -0.65
CTNND1-208ENST00000428599 MYBBP1AQ9BQG0 1328 aaKnown RBP10.98□□□□□ -0.65
CTNND1-208ENST00000428599 PCMTD1Q96MG8 357 aaPredicted RBP10.97□□□□□ -0.65
CTNND1-208ENST00000428599 RRP7AQ9Y3A4 280 aaKnown RBP10.97□□□□□ -0.65
CTNND1-208ENST00000428599 ATP6V1DQ9Y5K8 247 aa10.97□□□□□ -0.65
CTNND1-208ENST00000428599 PSME1Q06323 249 aa10.97□□□□□ -0.65
CTNND1-208ENST00000428599 ANKRD20A12PQ8NF67 263 aa10.97□□□□□ -0.65
CTNND1-208ENST00000428599 RILPL2Q969X0 211 aa10.96□□□□□ -0.65
CTNND1-208ENST00000428599 GOLGA6L19H0YKK7 550 aa10.96□□□□□ -0.65
CTNND1-208ENST00000428599 SYTL4Q96C24 671 aaPredicted RBP10.96□□□□□ -0.65
CTNND1-208ENST00000428599 IPO7O95373 1038 aaKnown RBP10.96□□□□□ -0.65
CTNND1-208ENST00000428599 ARID3AQ99856 593 aa10.96□□□□□ -0.65
CTNND1-208ENST00000428599 PRXQ9BXM0 1461 aa10.96□□□□□ -0.66
CTNND1-208ENST00000428599 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.96□□□□□ -0.661e-6■■■■■ 38.5
CTNND1-208ENST00000428599 CLUAP1Q96AJ1 413 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 RBM33Q96EV2 1170 aaKnown RBP10.95□□□□□ -0.66
CTNND1-208ENST00000428599 R3HCC1Q9Y3T6 440 aaKnown RBP10.95□□□□□ -0.66
CTNND1-208ENST00000428599 WASHC2AQ641Q2 1341 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 FOXD4L1Q9NU39 408 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 BECN2A8MW95 431 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 DIAPH3Q9NSV4 1193 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 HECW1Q76N89 1606 aa10.95□□□□□ -0.66
CTNND1-208ENST00000428599 APPP05067 770 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 EHBP1L1Q8N3D4 1523 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 RUFY2Q8WXA3 655 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 MCTP1Q6DN14 999 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 NGEFQ8N5V2 710 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 GPS2Q13227 327 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 ERICH2A1L162 156 aa10.94□□□□□ -0.66
CTNND1-208ENST00000428599 C9orf78Q9NZ63 289 aaPredicted RBP10.94□□□□□ -0.66
CTNND1-208ENST00000428599 HOOK1Q9UJC3 728 aaKnown RBP10.94□□□□□ -0.66
CTNND1-208ENST00000428599 ATF3P18847 181 aa10.93□□□□□ -0.66
CTNND1-208ENST00000428599 CCAR2Q8N163 923 aaKnown RBP10.93□□□□□ -0.66
CTNND1-208ENST00000428599 SCAPERQ9BY12 1400 aa10.93□□□□□ -0.66
CTNND1-208ENST00000428599 DDX58O95786 925 aaKnown RBP10.93□□□□□ -0.66
CTNND1-208ENST00000428599 TRDNQ13061 729 aa10.93□□□□□ -0.66
CTNND1-208ENST00000428599 TROQ12816 1431 aaPredicted RBP10.93□□□□□ -0.66
CTNND1-208ENST00000428599 CPLX1O14810 134 aa10.93□□□□□ -0.66
CTNND1-208ENST00000428599 TMEM132EQ6IEE7 984 aa10.93□□□□□ -0.66
CTNND1-208ENST00000428599 FOXD4L5Q5VV16 416 aaPredicted RBP10.92□□□□□ -0.66
CTNND1-208ENST00000428599 FOXD4L4Q8WXT5 416 aaPredicted RBP10.92□□□□□ -0.66
CTNND1-208ENST00000428599 STAC3Q96MF2 364 aa10.92□□□□□ -0.66
CTNND1-208ENST00000428599 PLEKHH2Q8IVE3 1493 aa10.92□□□□□ -0.66
CTNND1-208ENST00000428599 C9orf84Q5VXU9 1444 aa10.92□□□□□ -0.66
CTNND1-208ENST00000428599 DEKP35659 375 aaKnown RBP10.92□□□□□ -0.66
CTNND1-208ENST00000428599 ODF2Q5BJF6 829 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 ABCA10Q8WWZ4 1543 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 KIAA0586Q9BVV6 1533 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 PDE3BQ13370 1112 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 ZKSCAN1P17029 563 aaPredicted RBP10.91□□□□□ -0.66
CTNND1-208ENST00000428599 CT47A1Q5JQC4 288 aaPredicted RBP10.91□□□□□ -0.66
CTNND1-208ENST00000428599 NFXL1Q6ZNB6 911 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 ELL2O00472 640 aaPredicted RBP10.91□□□□□ -0.66
CTNND1-208ENST00000428599 RAPGEF3O95398 923 aa10.91□□□□□ -0.66
CTNND1-208ENST00000428599 SAMD1Q6SPF0 538 aaPredicted RBP10.91□□□□□ -0.66
CTNND1-208ENST00000428599 IFIT2P09913 472 aaKnown RBP10.9□□□□□ -0.66
CTNND1-208ENST00000428599 EIF2S2P20042 333 aaKnown RBP10.9□□□□□ -0.66
CTNND1-208ENST00000428599 DDX11L8A8MPP1 907 aa10.9□□□□□ -0.66
CTNND1-208ENST00000428599 TXNDC2Q86VQ3 553 aa10.9□□□□□ -0.66
CTNND1-208ENST00000428599 WWC2Q6AWC2 1192 aa10.9□□□□□ -0.66
CTNND1-208ENST00000428599 PRKRIP1Q9H875 184 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms