RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 COL17A1Q9UMD9 1497 aaPredicted RBP18.23■□□□□ 0.51
SDC1-202ENST00000381150 CEP152O94986 1710 aa18.23■□□□□ 0.51
SDC1-202ENST00000381150 TET3O43151 1660 aa18.23■□□□□ 0.51
SDC1-202ENST00000381150 KTN1Q86UP2 1357 aaKnown RBP18.23■□□□□ 0.51
SDC1-202ENST00000381150 CDCA7LQ96GN5 454 aa18.22■□□□□ 0.51
SDC1-202ENST00000381150 RGS3P49796 1198 aa18.22■□□□□ 0.51
SDC1-202ENST00000381150 MADDQ8WXG6 1647 aa18.21■□□□□ 0.51
SDC1-202ENST00000381150 SCAPERQ9BY12 1400 aa18.21■□□□□ 0.51
SDC1-202ENST00000381150 ADGRL1O94910 1474 aa18.21■□□□□ 0.51
SDC1-202ENST00000381150 MROH1Q8NDA8 1641 aa18.21■□□□□ 0.51
SDC1-202ENST00000381150 CLTCL1P53675 1640 aa18.21■□□□□ 0.51
SDC1-202ENST00000381150 DISP3Q9P2K9 1392 aa18.21■□□□□ 0.5
SDC1-202ENST00000381150 LRPPRCP42704 1394 aaKnown RBP18.2■□□□□ 0.5
SDC1-202ENST00000381150 RALBP1Q15311 655 aa18.19■□□□□ 0.5
SDC1-202ENST00000381150 DDRGK1Q96HY6 314 aa18.18■□□□□ 0.5
SDC1-202ENST00000381150 MYBBP1AQ9BQG0 1328 aaKnown RBP18.18■□□□□ 0.5
SDC1-202ENST00000381150 BRD4O60885 1362 aaPredicted RBP18.18■□□□□ 0.5
SDC1-202ENST00000381150 KIDINS220Q9ULH0 1771 aa18.18■□□□□ 0.5
SDC1-202ENST00000381150 PARD3Q8TEW0 1356 aa18.18■□□□□ 0.5
SDC1-202ENST00000381150 IQGAP1P46940 1657 aa18.17■□□□□ 0.5
SDC1-202ENST00000381150 CRBNQ96SW2 442 aa18.16■□□□□ 0.5
SDC1-202ENST00000381150 FRAT2O75474 233 aaPredicted RBP18.15■□□□□ 0.5
SDC1-202ENST00000381150 NEURL4Q96JN8 1562 aa18.15■□□□□ 0.5
SDC1-202ENST00000381150 KIF3BO15066 747 aa18.14■□□□□ 0.49
SDC1-202ENST00000381150 STAC3Q96MF2 364 aa18.13■□□□□ 0.49
SDC1-202ENST00000381150 OSCARQ8IYS5 282 aa18.13■□□□□ 0.49
SDC1-202ENST00000381150 CC2D1BQ5T0F9 858 aaKnown RBP18.13■□□□□ 0.49
SDC1-202ENST00000381150 WASHC2CQ9Y4E1 1318 aa18.12■□□□□ 0.49
SDC1-202ENST00000381150 KANK1Q14678 1352 aa18.11■□□□□ 0.49
SDC1-202ENST00000381150 UBE2Q2Q8WVN8 375 aa18.11■□□□□ 0.49
SDC1-202ENST00000381150 RNF123Q5XPI4 1314 aa18.1■□□□□ 0.49
SDC1-202ENST00000381150 TMF1P82094 1093 aa18.1■□□□□ 0.49
SDC1-202ENST00000381150 ZNF518AQ6AHZ1 1483 aa18.09■□□□□ 0.49
SDC1-202ENST00000381150 KIAA1210Q9ULL0 1709 aa18.09■□□□□ 0.49
SDC1-202ENST00000381150 PANK3Q9H999 370 aa18.09■□□□□ 0.49
SDC1-202ENST00000381150 EFCAB6Q5THR3 1501 aa18.08■□□□□ 0.49
SDC1-202ENST00000381150 NLRP13Q86W25 1043 aa18.08■□□□□ 0.49
SDC1-202ENST00000381150 LMTK2Q8IWU2 1503 aa18.08■□□□□ 0.48
SDC1-202ENST00000381150 UGGT1Q9NYU2 1555 aa18.08■□□□□ 0.48
SDC1-202ENST00000381150 PPRC1Q5VV67 1664 aaKnown RBP18.07■□□□□ 0.48
SDC1-202ENST00000381150 C20orf194Q5TEA3 1177 aa18.07■□□□□ 0.48
SDC1-202ENST00000381150 SCAF11Q99590 1463 aaKnown RBP18.06■□□□□ 0.48
SDC1-202ENST00000381150 MS4A1P11836 297 aa18.06■□□□□ 0.48
SDC1-202ENST00000381150 SLKQ9H2G2 1235 aaPredicted RBP18.06■□□□□ 0.48
SDC1-202ENST00000381150 IFT172Q9UG01 1749 aa18.05■□□□□ 0.48
SDC1-202ENST00000381150 CD109Q6YHK3 1445 aa18.05■□□□□ 0.48
SDC1-202ENST00000381150 FRMPD1Q5SYB0 1578 aa18.05■□□□□ 0.48
SDC1-202ENST00000381150 MAP3K4Q9Y6R4 1608 aa18.04■□□□□ 0.48
SDC1-202ENST00000381150 KIF1BO60333 1816 aa18.04■□□□□ 0.48
SDC1-202ENST00000381150 MLH3Q9UHC1 1453 aa18.04■□□□□ 0.48
SDC1-202ENST00000381150 POGZQ7Z3K3 1410 aa18.04■□□□□ 0.48
SDC1-202ENST00000381150 NPM1P06748 294 aaKnown RBP eCLIP18.03■□□□□ 0.48
SDC1-202ENST00000381150 MYOM2P54296 1465 aa18.03■□□□□ 0.48
SDC1-202ENST00000381150 CFAP74Q9C0B2 1584 aa18.03■□□□□ 0.48
SDC1-202ENST00000381150 MROH2AA6NES4 1674 aa18.02■□□□□ 0.48
SDC1-202ENST00000381150 SPRYD3Q8NCJ5 442 aa18.01■□□□□ 0.47
SDC1-202ENST00000381150 ABCA6Q8N139 1617 aa18.01■□□□□ 0.47
SDC1-202ENST00000381150 NRXN1Q9ULB1 1477 aa18■□□□□ 0.47
SDC1-202ENST00000381150 MYOM1P52179 1685 aa18■□□□□ 0.47
SDC1-202ENST00000381150 ADGRF5Q8IZF2 1346 aa17.99■□□□□ 0.47
SDC1-202ENST00000381150 INSRP06213 1382 aa17.99■□□□□ 0.47
SDC1-202ENST00000381150 SYNMO15061 1565 aa17.99■□□□□ 0.47
SDC1-202ENST00000381150 ZMYM4Q5VZL5 1548 aa17.99■□□□□ 0.47
SDC1-202ENST00000381150 HECW2Q9P2P5 1572 aa17.98■□□□□ 0.47
SDC1-202ENST00000381150 NAP1L5Q96NT1 182 aaPredicted RBP17.98■□□□□ 0.47
SDC1-202ENST00000381150 GZF1Q9H116 711 aaPredicted RBP17.98■□□□□ 0.47
SDC1-202ENST00000381150 CFAP70Q5T0N1 1121 aa17.97■□□□□ 0.47
SDC1-202ENST00000381150 ADGRB3O60242 1522 aa17.96■□□□□ 0.47
SDC1-202ENST00000381150 AMER1Q5JTC6 1135 aaPredicted RBP17.96■□□□□ 0.47
SDC1-202ENST00000381150 POGKQ9P215 609 aa17.96■□□□□ 0.47
SDC1-202ENST00000381150 NPATQ14207 1427 aa17.96■□□□□ 0.47
SDC1-202ENST00000381150 BLMP54132 1417 aaPredicted RBP17.95■□□□□ 0.46
SDC1-202ENST00000381150 FAM161AQ3B820 660 aa17.94■□□□□ 0.46
SDC1-202ENST00000381150 CDCA8Q53HL2 280 aa17.94■□□□□ 0.46
SDC1-202ENST00000381150 RSPH6AQ9H0K4 717 aa17.94■□□□□ 0.46
SDC1-202ENST00000381150 NEO1Q92859 1461 aa17.93■□□□□ 0.46
SDC1-202ENST00000381150 CFAP65Q6ZU64 1925 aaKnown RBP17.93■□□□□ 0.46
SDC1-202ENST00000381150 EIF3AQ14152 1382 aaKnown RBP17.93■□□□□ 0.46
SDC1-202ENST00000381150 ERVK-7P63135 1459 aa17.92■□□□□ 0.46
SDC1-202ENST00000381150 MYO3AQ8NEV4 1616 aa17.92■□□□□ 0.46
SDC1-202ENST00000381150 PPLO60437 1756 aa17.92■□□□□ 0.46
SDC1-202ENST00000381150 KDM5AP29375 1690 aaKnown RBP17.92■□□□□ 0.46
SDC1-202ENST00000381150 ABCC3O15438 1527 aa17.91■□□□□ 0.46
SDC1-202ENST00000381150 VSIG10Q8N0Z9 540 aa17.91■□□□□ 0.46
SDC1-202ENST00000381150 ASXL1Q8IXJ9 1541 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 NPC1L1Q9UHC9 1359 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 PDE3BQ13370 1112 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 KNSTRNQ9Y448 316 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 SIGLEC1Q9BZZ2 1709 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 SETBP1Q9Y6X0 1596 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 NOS1P29475 1434 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 PPP2R1AP30153 589 aa17.9■□□□□ 0.46
SDC1-202ENST00000381150 CANXP27824 592 aaKnown RBP17.89■□□□□ 0.45
SDC1-202ENST00000381150 RAPGEF3O95398 923 aa17.89■□□□□ 0.45
SDC1-202ENST00000381150 GGT6Q6P531 493 aa17.89■□□□□ 0.45
SDC1-202ENST00000381150 DIP2CQ9Y2E4 1556 aa17.88■□□□□ 0.45
SDC1-202ENST00000381150 PIK3C2GO75747 1445 aa17.88■□□□□ 0.45
SDC1-202ENST00000381150 RICTORQ6R327 1708 aa17.88■□□□□ 0.45
SDC1-202ENST00000381150 SBNO2Q9Y2G9 1366 aa17.87■□□□□ 0.45
SDC1-202ENST00000381150 CAMSAP1Q5T5Y3 1602 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms