RNA–Protein interactions for RNA: YDR108W

TRS85, Transcript of Component of transport protein particle (TRAPP) complex III, yeastyeast

Gene TRS85, Length 2,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRS85YDR108W YER121WP40076 114 aa3.81□□□□□ -1.8
TRS85YDR108W MPM1P40364 252 aa3.81□□□□□ -1.8
TRS85YDR108W NAS2P40555 220 aa3.81□□□□□ -1.8
TRS85YDR108W GPI14P47088 403 aaKnown RBP3.81□□□□□ -1.8
TRS85YDR108W MTR3P48240 250 aaPredicted RBP3.81□□□□□ -1.8
TRS85YDR108W YIF1P53845 314 aaKnown RBP3.81□□□□□ -1.8
TRS85YDR108W ELC1Q03071 99 aa3.81□□□□□ -1.8
TRS85YDR108W RCE1Q03530 315 aa3.81□□□□□ -1.8
TRS85YDR108W ARA2Q04212 335 aa3.81□□□□□ -1.8
TRS85YDR108W ERP1Q05359 219 aaKnown RBP3.81□□□□□ -1.8
TRS85YDR108W PLB3Q08108 686 aa3.81□□□□□ -1.8
TRS85YDR108W ATG41Q12048 136 aa3.81□□□□□ -1.8
TRS85YDR108W YLR049CQ12110 428 aa3.81□□□□□ -1.8
TRS85YDR108W YOL114CQ12322 202 aa3.81□□□□□ -1.8
TRS85YDR108W PDH1Q12428 516 aaKnown RBP3.81□□□□□ -1.8
TRS85YDR108W RPL13AQ12690 199 aaPredicted RBP3.81□□□□□ -1.8
TRS85YDR108W ILV1P00927 576 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W MES1P00958 751 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W QCR2P07257 368 aa3.8□□□□□ -1.8
TRS85YDR108W PHO2P07269 559 aa3.8□□□□□ -1.8
TRS85YDR108W MSF1P08425 469 aa3.8□□□□□ -1.8
TRS85YDR108W SRD1P09007 221 aa3.8□□□□□ -1.8
TRS85YDR108W PUT1P09368 476 aa3.8□□□□□ -1.8
TRS85YDR108W RPL40AP0CH08 128 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W RPL40BP0CH09 128 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W RPS4AP0CX35 261 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W RPS4BP0CX36 261 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W YFL068WP0CX99 160 aa3.8□□□□□ -1.8
TRS85YDR108W YLL066W-AP0CY00 160 aa3.8□□□□□ -1.8
TRS85YDR108W YLL067W-AP0CY01 160 aa3.8□□□□□ -1.8
TRS85YDR108W DAL82P21705 255 aa3.8□□□□□ -1.8
TRS85YDR108W POT1P27796 417 aaKnown RBP RIP-Chip data3.8□□□□□ -1.8not detected
TRS85YDR108W HOG1P32485 435 aa3.8□□□□□ -1.8
TRS85YDR108W SPC29P33419 253 aa3.8□□□□□ -1.8
TRS85YDR108W UPS2P35200 230 aa3.8□□□□□ -1.8
TRS85YDR108W LDB7P38210 180 aa3.8□□□□□ -1.8
TRS85YDR108W YHR177WP38867 453 aa3.8□□□□□ -1.8
TRS85YDR108W MET30P39014 640 aa3.8□□□□□ -1.8
TRS85YDR108W SHO1P40073 367 aa3.8□□□□□ -1.8
TRS85YDR108W HMS2P47175 358 aa3.8□□□□□ -1.8
TRS85YDR108W YGR149WP48236 432 aa3.8□□□□□ -1.8
TRS85YDR108W SGF73P53165 657 aa3.8□□□□□ -1.8
TRS85YDR108W GUD1Q07729 489 aa3.8□□□□□ -1.8
TRS85YDR108W YLL056CQ12177 298 aa3.8□□□□□ -1.8
TRS85YDR108W TIF6Q12522 245 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W ILV5P06168 395 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W TIR1P10863 254 aa3.8□□□□□ -1.8
TRS85YDR108W NOP1P15646 327 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W ANB1P19211 157 aa3.8□□□□□ -1.8
TRS85YDR108W PUT3P25502 979 aaPredicted RBP3.8□□□□□ -1.8
TRS85YDR108W YCR099CP25657 155 aa3.8□□□□□ -1.8
TRS85YDR108W POP5P28005 173 aa3.8□□□□□ -1.8
TRS85YDR108W OAC1P32332 324 aa3.8□□□□□ -1.8
TRS85YDR108W SRB5P32585 307 aa3.8□□□□□ -1.8
TRS85YDR108W RML2P32611 393 aa3.8□□□□□ -1.8
TRS85YDR108W UTR5P32630 166 aa3.8□□□□□ -1.8
TRS85YDR108W MCH2P36032 473 aa3.8□□□□□ -1.8
TRS85YDR108W PHD1P36093 366 aa3.8□□□□□ -1.8
TRS85YDR108W COX15P40086 486 aa3.8□□□□□ -1.8
TRS85YDR108W COA1P40452 197 aa3.8□□□□□ -1.8
TRS85YDR108W AVT7P40501 490 aa3.8□□□□□ -1.8
TRS85YDR108W OTU1P43558 301 aa3.8□□□□□ -1.8
TRS85YDR108W MGA1P53050 456 aa3.8□□□□□ -1.8
TRS85YDR108W PUS2P53167 370 aa3.8□□□□□ -1.8
TRS85YDR108W TPS1Q00764 495 aaKnown RBP3.8□□□□□ -1.8
TRS85YDR108W GOT1Q03554 138 aa3.8□□□□□ -1.8
TRS85YDR108W CRF1Q04930 467 aa3.8□□□□□ -1.8
TRS85YDR108W NOC4Q06512 552 aaPredicted RBP3.8□□□□□ -1.8
TRS85YDR108W MCH1Q07376 486 aa3.8□□□□□ -1.8
TRS85YDR108W PAU23Q07987 124 aa3.8□□□□□ -1.8
TRS85YDR108W GPB1Q08886 897 aa3.8□□□□□ -1.8
TRS85YDR108W PAU17Q12370 124 aa3.8□□□□□ -1.8
TRS85YDR108W YIR021W-AQ3E739 70 aa3.8□□□□□ -1.8
TRS85YDR108W YKL033W-AQ86ZR7 236 aa3.8□□□□□ -1.8
TRS85YDR108W RIF1P29539 1916 aa3.79□□□□□ -1.8
TRS85YDR108W CBS1P14066 229 aa3.79□□□□□ -1.8
TRS85YDR108W HSP26P15992 214 aaKnown RBP RIP-Chip data3.79□□□□□ -1.8not detected
TRS85YDR108W RPB5P20434 215 aa3.79□□□□□ -1.8
TRS85YDR108W TIP1P27654 210 aaPredicted RBP3.79□□□□□ -1.8
TRS85YDR108W FMT1P32785 401 aa3.79□□□□□ -1.8
TRS85YDR108W COX13P32799 129 aa3.79□□□□□ -1.8
TRS85YDR108W PMU1P36069 295 aa3.79□□□□□ -1.8
TRS85YDR108W YER085CP40058 173 aa3.79□□□□□ -1.8
TRS85YDR108W SEC24P40482 926 aaKnown RBP3.79□□□□□ -1.8
TRS85YDR108W CAT5P41735 233 aa3.79□□□□□ -1.8
TRS85YDR108W YJL132WP47014 750 aa3.79□□□□□ -1.8
TRS85YDR108W BIT61P47041 543 aa3.79□□□□□ -1.8
TRS85YDR108W NIF3P53081 288 aa3.79□□□□□ -1.8
TRS85YDR108W VPS73P53142 486 aaKnown RBP3.79□□□□□ -1.8
TRS85YDR108W BOR1P53838 576 aa3.79□□□□□ -1.8
TRS85YDR108W ATG4P53867 494 aa3.79□□□□□ -1.8
TRS85YDR108W MRPL19P53875 158 aa3.79□□□□□ -1.8
TRS85YDR108W YLR446WQ06204 433 aa3.79□□□□□ -1.8
TRS85YDR108W GRE1Q08969 168 aa3.79□□□□□ -1.8
TRS85YDR108W FRE8Q12209 686 aa3.79□□□□□ -1.8
TRS85YDR108W TIR4Q12218 487 aaPredicted RBP3.79□□□□□ -1.8
TRS85YDR108W YCT1Q12235 531 aa3.79□□□□□ -1.8
TRS85YDR108W TY1A-NL1Q12391 440 aaKnown RBP3.79□□□□□ -1.8
TRS85YDR108W HUT1Q12520 339 aa3.79□□□□□ -1.8
TRS85YDR108W FOL3Q12676 427 aaPredicted RBP3.79□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 125.8 ms