RNA–Protein interactions for RNA: YDR108W

TRS85, Transcript of Component of transport protein particle (TRAPP) complex III, yeastyeast

Gene TRS85, Length 2,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRS85YDR108W MTC1P47018 478 aaKnown RBP9.45□□□□□ -0.9
TRS85YDR108W FAP1P53971 965 aa8.83□□□□□ -1
TRS85YDR108W DRS1P32892 752 aaKnown RBP8.49□□□□□ -1.05
TRS85YDR108W PRY3P47033 881 aa8.34□□□□□ -1.07
TRS85YDR108W PRI1P10363 409 aa8.17□□□□□ -1.1
TRS85YDR108W AAD16Q02895 342 aa8.12□□□□□ -1.11
TRS85YDR108W YCK3P39962 524 aa7.97□□□□□ -1.13
TRS85YDR108W ISW2Q08773 1120 aa7.87□□□□□ -1.15
TRS85YDR108W RPG1P38249 964 aaKnown RBP7.83□□□□□ -1.16
TRS85YDR108W HAA1Q12753 694 aaKnown RBP7.78□□□□□ -1.16
TRS85YDR108W TSR3Q12094 313 aaKnown RBP7.69□□□□□ -1.18
TRS85YDR108W DIP2Q12220 943 aaPredicted RBP7.58□□□□□ -1.2
TRS85YDR108W RSE1Q04693 1361 aaKnown RBP7.38□□□□□ -1.23
TRS85YDR108W MRPL32P25348 183 aa7.34□□□□□ -1.23
TRS85YDR108W AVT3P36062 692 aa7.24□□□□□ -1.25
TRS85YDR108W RPL17AP05740 184 aaKnown RBP7.18□□□□□ -1.26
TRS85YDR108W RPL17BP46990 184 aaKnown RBP7.18□□□□□ -1.26
TRS85YDR108W REB1P21538 810 aa7.16□□□□□ -1.26
TRS85YDR108W YGL015CP33199 130 aa7.13□□□□□ -1.27
TRS85YDR108W CDC27P38042 758 aa7□□□□□ -1.29
TRS85YDR108W SPT21P35209 758 aa6.91□□□□□ -1.3
TRS85YDR108W YKR023WP36119 530 aaKnown RBP6.91□□□□□ -1.3
TRS85YDR108W BFR2Q06631 534 aaKnown RBP6.89□□□□□ -1.31
TRS85YDR108W MAP2P38174 421 aaKnown RBP6.8□□□□□ -1.32
TRS85YDR108W UBP10P53874 792 aaPredicted RBP6.78□□□□□ -1.32
TRS85YDR108W DCD1P06773 312 aa6.75□□□□□ -1.33
TRS85YDR108W HOP09932 586 aa6.74□□□□□ -1.33
TRS85YDR108W TFC8Q12308 588 aa6.74□□□□□ -1.33
TRS85YDR108W BUD31P25337 157 aaPredicted RBP6.72□□□□□ -1.33
TRS85YDR108W SCY1P53009 804 aa6.59□□□□□ -1.35
TRS85YDR108W RIM101P33400 625 aa6.57□□□□□ -1.36
TRS85YDR108W RQC2Q12532 1038 aaKnown RBP6.54□□□□□ -1.36
TRS85YDR108W BCH2P36122 765 aa6.52□□□□□ -1.37
TRS85YDR108W SLX5P32828 619 aaKnown RBP6.49□□□□□ -1.37
TRS85YDR108W TGL3P40308 642 aa6.48□□□□□ -1.37
TRS85YDR108W TIF4632P39936 914 aaKnown RBP6.48□□□□□ -1.37
TRS85YDR108W TFA1P36100 482 aa6.46□□□□□ -1.38
TRS85YDR108W OXP1P28273 1286 aa6.36□□□□□ -1.39
TRS85YDR108W UBP9P39967 754 aa6.34□□□□□ -1.4
TRS85YDR108W SIS1P25294 352 aaKnown RBP6.32□□□□□ -1.4
TRS85YDR108W EPS1P40557 701 aa6.32□□□□□ -1.4
TRS85YDR108W BDF1P35817 686 aa6.31□□□□□ -1.4
TRS85YDR108W PTP3P40048 928 aa6.22□□□□□ -1.41
TRS85YDR108W MST1P07236 462 aa6.21□□□□□ -1.41
TRS85YDR108W YIL055CP40523 627 aaKnown RBP6.18□□□□□ -1.42
TRS85YDR108W TAF7Q05021 590 aa6.18□□□□□ -1.42
TRS85YDR108W YBL029C-AQ3E756 94 aa6.16□□□□□ -1.42
TRS85YDR108W RSM7P47150 247 aa6.13□□□□□ -1.43
TRS85YDR108W YOR238WQ08634 303 aa6.13□□□□□ -1.43
TRS85YDR108W NSR1P27476 414 aaKnown RBP RIP-Chip data6.12□□□□□ -1.43not detected
TRS85YDR108W NOP2P40991 618 aaKnown RBP6.12□□□□□ -1.43
TRS85YDR108W AI2P03876 854 aa6.11□□□□□ -1.43
TRS85YDR108W BBC1P47068 1157 aa6.1□□□□□ -1.43
TRS85YDR108W YAH1Q12184 172 aaKnown RBP6.08□□□□□ -1.44
TRS85YDR108W VNX1P42839 908 aa6.06□□□□□ -1.44
TRS85YDR108W YAP5P40574 245 aa6.05□□□□□ -1.44
TRS85YDR108W YLR271WQ06152 274 aa6.01□□□□□ -1.45
TRS85YDR108W SPP1Q03012 353 aa5.98□□□□□ -1.45
TRS85YDR108W WSC3Q12215 556 aa5.98□□□□□ -1.45
TRS85YDR108W CAB3P36076 571 aa5.97□□□□□ -1.45
TRS85YDR108W EBP2P36049 427 aaKnown RBP5.97□□□□□ -1.45
TRS85YDR108W PSD2P53037 1138 aaKnown RBP5.96□□□□□ -1.46
TRS85YDR108W AIR2Q12476 344 aaKnown RBP5.92□□□□□ -1.46
TRS85YDR108W TIF11P38912 153 aaKnown RBP5.91□□□□□ -1.46
TRS85YDR108W URN1Q06525 465 aaKnown RBP5.91□□□□□ -1.46
TRS85YDR108W FKH1P40466 484 aa5.9□□□□□ -1.47
TRS85YDR108W PIB1Q06651 286 aa5.89□□□□□ -1.47
TRS85YDR108W GTT3P39996 337 aa5.88□□□□□ -1.47
TRS85YDR108W MRM1P25270 412 aa5.87□□□□□ -1.47
TRS85YDR108W IOC2Q12072 812 aa5.84□□□□□ -1.47
TRS85YDR108W LDB19Q12502 818 aa5.84□□□□□ -1.47
TRS85YDR108W SIS2P36024 562 aa5.83□□□□□ -1.48
TRS85YDR108W ULI1P43604 169 aa5.82□□□□□ -1.48
TRS85YDR108W YJL171CP46992 396 aa5.81□□□□□ -1.48
TRS85YDR108W SSP1P38871 571 aa5.8□□□□□ -1.48
TRS85YDR108W CST9Q06032 482 aa5.79□□□□□ -1.48
TRS85YDR108W VPS29P38759 282 aa5.78□□□□□ -1.48
TRS85YDR108W MSB4Q12317 492 aa5.76□□□□□ -1.49
TRS85YDR108W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.76□□□□□ -1.49 RIP-Chip
TRS85YDR108W YOL036WQ08206 761 aa5.75□□□□□ -1.49
TRS85YDR108W YMR1P47147 688 aaKnown RBP RIP-Chip data5.75□□□□□ -1.49not detected
TRS85YDR108W DBP1P24784 617 aaKnown RBP5.74□□□□□ -1.49
TRS85YDR108W SET4P42948 560 aa5.74□□□□□ -1.49
TRS85YDR108W STS1P38637 319 aa5.73□□□□□ -1.49
TRS85YDR108W BMT6Q12291 365 aa5.73□□□□□ -1.49
TRS85YDR108W YFR006WP43590 535 aa5.73□□□□□ -1.49
TRS85YDR108W TRP5P00931 707 aaKnown RBP5.72□□□□□ -1.49
TRS85YDR108W EAP1P36041 632 aaKnown RBP5.71□□□□□ -1.49
TRS85YDR108W RTG3P38165 486 aa5.71□□□□□ -1.5
TRS85YDR108W MGA2P40578 1113 aa5.71□□□□□ -1.5
TRS85YDR108W YPR148CQ06523 435 aa5.71□□□□□ -1.5
TRS85YDR108W VMA1P17255 1071 aaKnown RBP5.7□□□□□ -1.5
TRS85YDR108W RCR1P38212 213 aa5.7□□□□□ -1.5
TRS85YDR108W RTG1P32607 177 aa5.7□□□□□ -1.5
TRS85YDR108W SAM3Q08986 587 aa5.67□□□□□ -1.5
TRS85YDR108W DMA1P38823 416 aa5.67□□□□□ -1.5
TRS85YDR108W SKI3P17883 1432 aaKnown RBP5.66□□□□□ -1.5
TRS85YDR108W NCR1Q12200 1170 aa5.65□□□□□ -1.5
TRS85YDR108W YNL035CP53962 389 aaKnown RBP5.64□□□□□ -1.51
TRS85YDR108W SEC61P32915 480 aa5.63□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms