RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	RSA4	P25382	515 aa	Known RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	MRP17	P28778	131 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	SUA5	P32579	426 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	SEC17	P32602	292 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CDC4	YFL009W	MRPL4	P36517	319 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	MTC4	P38335	694 aa	Known RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	HTD2	P38790	280 aa	Known RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	ZIM17	P42844	174 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	SIP4	P46954	829 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	BUL1	P48524	976 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	MNN10	P50108	393 aa	Known RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	SOL1	P50278	321 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	EXG2	P52911	562 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	YNL134C	P53912	376 aa	Known RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	CYT2	Q00873	224 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	YPL062W	Q02781	134 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	AIM6	Q07716	390 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	LEA1	Q08963	238 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC4	YFL009W	ATG41	Q12048	136 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	PRM4	Q12498	284 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	YPR053C	Q6Q5F3	151 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	FSH3	Q99369	266 aa		4.59	□□□□□ -1.67
CDC4	YFL009W	HIS1	P00498	297 aa	Known RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	CPR4	P25334	318 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	ARO9	P38840	513 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	CTF8	P38877	133 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	SNM1	P40993	198 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	TAX4	P47030	604 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	YJR012C	P47087	207 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	NSA1	P53136	463 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	SNA4	Q07549	140 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	BTS1	Q12051	335 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	TIR4	Q12218	487 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
CDC4	YFL009W	YDL177C	Q12257	170 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	RRP42	Q12277	265 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	TRM13	Q12383	476 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	ERP3	Q12403	225 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	ECM29	P38737	1868 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	RPL9A	P05738	191 aa	Known RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	CDC26	P14724	124 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	PET18	P25362	215 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	SNC2	P33328	115 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	UBA4	P38820	440 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	GAT2	P40209	560 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	QRI7	P43122	407 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	RPL9B	P51401	191 aa	Known RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	NPY1	P53164	384 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	YGR017W	P53210	297 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	YGR042W	P53227	271 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	AAH1	P53909	347 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	YPL014W	Q02606	381 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	RTT103	Q05543	409 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
CDC4	YFL009W	POM33	Q12164	279 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	YLR118C	Q12354	227 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	AHC1	Q12433	566 aa		4.58	□□□□□ -1.68
CDC4	YFL009W	PNO1	Q99216	274 aa	Known RBP	4.58	□□□□□ -1.68
CDC4	YFL009W	YMR084W	A2P2R3	262 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	CET1	O13297	549 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	YML003W	P0CF16	290 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	YOL163W	P0CF20	169 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	PEX4	P29340	183 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	MF(ALPHA)2	P32435	120 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	CTF13	P35203	478 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	SHE1	P38200	338 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	YPC1	P38298	316 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	FLX1	P40464	311 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	TAF4	P50105	388 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	FRE4	P53746	719 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	YSA1	Q01976	231 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	DIG2	Q03373	323 aa	Known RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	SPG3	Q04398	127 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	AIM32	Q04689	311 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	PIN3	Q06449	215 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	SRO7	Q12038	1033 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	YLR099W-A	Q3E798	87 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	MSF1	P08425	469 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	PDX1	P16451	410 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	SPO7	P18410	259 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	LOT5	P34234	306 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	DBP8	P38719	431 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	LRP1	P38801	184 aa	Known RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	SEN15	Q04675	128 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	RTN1	Q04947	295 aa	Known RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	RRP45	Q05636	305 aa	Known RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	GRX8	Q05926	109 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	MRI1	Q06489	411 aa	Known RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	NOC4	Q06512	552 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC4	YFL009W	HEM25	Q07534	307 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	REX4	Q08237	289 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	MMT2	Q08970	484 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	TMS1	Q12116	473 aa		4.57	□□□□□ -1.68
CDC4	YFL009W	HAP3	P13434	144 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	SEC22	P22214	214 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	LAC1	P28496	418 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	YKR073C	P36153	106 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	EHT1	P38295	451 aa		4.56	□□□□□ -1.68
CDC4	YFL009W	URM1	P40554	99 aa	Predicted RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 402.6 ms