RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C TAD2P47058 250 aa6.21□□□□□ -1.42
TDP1YBR223C GPI14P47088 403 aaKnown RBP6.21□□□□□ -1.42
TDP1YBR223C SEH1P53011 349 aaKnown RBP6.21□□□□□ -1.42
TDP1YBR223C SOK2P53438 785 aaPredicted RBP6.21□□□□□ -1.42
TDP1YBR223C MPA43P53583 542 aaPredicted RBP6.21□□□□□ -1.42
TDP1YBR223C SUN4P53616 420 aa6.21□□□□□ -1.42
TDP1YBR223C YLR152CP54072 576 aa6.21□□□□□ -1.42
TDP1YBR223C LAP3Q01532 483 aaKnown RBP RIP-Chip data6.21□□□□□ -1.42not detected
TDP1YBR223C BNA5Q05979 453 aa6.21□□□□□ -1.42
TDP1YBR223C YLR030WQ07967 263 aa6.21□□□□□ -1.42
TDP1YBR223C YLR108CQ12259 485 aa6.21□□□□□ -1.42
TDP1YBR223C YHR213W-AQ8TGT4 77 aa6.21□□□□□ -1.42
TDP1YBR223C CHO1P08456 276 aa6.2□□□□□ -1.42
TDP1YBR223C URA6P15700 204 aa6.2□□□□□ -1.42
TDP1YBR223C ADH7P25377 361 aa6.2□□□□□ -1.42
TDP1YBR223C PDC2P32896 925 aa6.2□□□□□ -1.42
TDP1YBR223C SNC2P33328 115 aa6.2□□□□□ -1.42
TDP1YBR223C SRY1P36007 326 aa6.2□□□□□ -1.42
TDP1YBR223C PAN3P36102 679 aaPredicted RBP6.2□□□□□ -1.42
TDP1YBR223C COS8P38723 381 aa6.2□□□□□ -1.42
TDP1YBR223C YJL193WP39542 402 aa6.2□□□□□ -1.42
TDP1YBR223C SHR5P41912 237 aa6.2□□□□□ -1.42
TDP1YBR223C YFR054CP43622 192 aa6.2□□□□□ -1.42
TDP1YBR223C TRM9P49957 279 aa6.2□□□□□ -1.42
TDP1YBR223C PHB2P50085 310 aa6.2□□□□□ -1.42
TDP1YBR223C BNA7Q04066 261 aa6.2□□□□□ -1.42
TDP1YBR223C PAL1Q05518 499 aaKnown RBP6.2□□□□□ -1.42
TDP1YBR223C ANT1Q06497 328 aa6.2□□□□□ -1.42
TDP1YBR223C TFB5Q3E7C1 72 aaPredicted RBP6.2□□□□□ -1.42
TDP1YBR223C REP2P03872 296 aa6.19□□□□□ -1.42
TDP1YBR223C OPI3P05375 206 aa6.19□□□□□ -1.42
TDP1YBR223C RPL1AP0CX43 217 aaKnown RBP6.19□□□□□ -1.42
TDP1YBR223C RPL1BP0CX44 217 aaKnown RBP6.19□□□□□ -1.42
TDP1YBR223C HXT2P23585 541 aa6.19□□□□□ -1.42
TDP1YBR223C NFS1P25374 497 aa6.19□□□□□ -1.42
TDP1YBR223C KRR1P25586 316 aaPredicted RBP6.19□□□□□ -1.42
TDP1YBR223C SSH1P38353 490 aaKnown RBP6.19□□□□□ -1.42
TDP1YBR223C PUG1P40100 303 aa6.19□□□□□ -1.42
TDP1YBR223C DLS1P40366 167 aa6.19□□□□□ -1.42
TDP1YBR223C YIL152WP40455 235 aa6.19□□□□□ -1.42
TDP1YBR223C YIP4P53093 235 aa6.19□□□□□ -1.42
TDP1YBR223C TYW3P53177 273 aa6.19□□□□□ -1.42
TDP1YBR223C SCW4P53334 386 aaKnown RBP6.19□□□□□ -1.42
TDP1YBR223C INN1P53901 409 aa6.19□□□□□ -1.42
TDP1YBR223C SNP1Q00916 300 aaPredicted RBP6.19□□□□□ -1.42
TDP1YBR223C YDR249CQ03787 373 aa6.19□□□□□ -1.42
TDP1YBR223C BSC6Q08280 497 aa6.19□□□□□ -1.42
TDP1YBR223C YPL272CQ08984 517 aa6.19□□□□□ -1.42
TDP1YBR223C ATP16Q12165 160 aa6.19□□□□□ -1.42
TDP1YBR223C EAF3Q12432 401 aa6.19□□□□□ -1.42
TDP1YBR223C YDR034W-BQ6Q5X2 51 aa6.19□□□□□ -1.42
TDP1YBR223C ARF1P11076 181 aaKnown RBP6.18□□□□□ -1.42
TDP1YBR223C PET18P25362 215 aa6.18□□□□□ -1.42
TDP1YBR223C CWP1P28319 239 aa6.18□□□□□ -1.42
TDP1YBR223C MKS1P34072 584 aa6.18□□□□□ -1.42
TDP1YBR223C CBT1P36038 271 aaPredicted RBP6.18□□□□□ -1.42
TDP1YBR223C SSO2P39926 295 aa6.18□□□□□ -1.42
TDP1YBR223C GLR1P41921 483 aaKnown RBP6.18□□□□□ -1.42
TDP1YBR223C YJR111CP47148 283 aaKnown RBP6.18□□□□□ -1.42
TDP1YBR223C YJR115WP47152 169 aa6.18□□□□□ -1.42
TDP1YBR223C BXI1P48558 297 aa6.18□□□□□ -1.42
TDP1YBR223C OKP1P53298 406 aa6.18□□□□□ -1.42
TDP1YBR223C YNR014WP53719 212 aa6.18□□□□□ -1.42
TDP1YBR223C RHO5P53879 331 aaKnown RBP6.18□□□□□ -1.42
TDP1YBR223C NRK1P53915 240 aa6.18□□□□□ -1.42
TDP1YBR223C APM1Q00776 475 aaPredicted RBP6.18□□□□□ -1.42
TDP1YBR223C SNX41Q04053 625 aa6.18□□□□□ -1.42
TDP1YBR223C DIC1Q06143 298 aa6.18□□□□□ -1.42
TDP1YBR223C HEM25Q07534 307 aa6.18□□□□□ -1.42
TDP1YBR223C IRC19Q07843 230 aa6.18□□□□□ -1.42
TDP1YBR223C YOR343CQ12484 108 aa6.18□□□□□ -1.42
TDP1YBR223C MSW1P04803 379 aa6.17□□□□□ -1.42
TDP1YBR223C CYT1P07143 309 aa6.17□□□□□ -1.42
TDP1YBR223C SGA1P08019 549 aa6.17□□□□□ -1.42
TDP1YBR223C CTA1P15202 515 aa6.17□□□□□ -1.42
TDP1YBR223C AIM17P23180 465 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C MEK1P24719 497 aaPredicted RBP6.17□□□□□ -1.42
TDP1YBR223C CPR3P25719 182 aa6.17□□□□□ -1.42
TDP1YBR223C PPA2P28239 310 aa6.17□□□□□ -1.42
TDP1YBR223C SRB6P32570 121 aa6.17□□□□□ -1.42
TDP1YBR223C MRPL15P36523 253 aa6.17□□□□□ -1.42
TDP1YBR223C MRPL27P36526 146 aaPredicted RBP6.17□□□□□ -1.42
TDP1YBR223C LSM12P38828 187 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C BFR1P38934 470 aaKnown RBP RIP-Chip data6.17□□□□□ -1.42not detected
TDP1YBR223C LTP1P40347 161 aa6.17□□□□□ -1.42
TDP1YBR223C YIL086CP40503 102 aa6.17□□□□□ -1.42
TDP1YBR223C YIL067CP40514 678 aa6.17□□□□□ -1.42
TDP1YBR223C NIT3P49954 291 aa6.17□□□□□ -1.42
TDP1YBR223C PDR16P53860 351 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C PET191Q02772 108 aa6.17□□□□□ -1.42
TDP1YBR223C RVB1Q03940 463 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C HNT1Q04344 158 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C NNT1Q05874 261 aa6.17□□□□□ -1.42
TDP1YBR223C NOC4Q06512 552 aaPredicted RBP6.17□□□□□ -1.42
TDP1YBR223C PRP46Q12417 451 aaPredicted RBP6.17□□□□□ -1.42
TDP1YBR223C YJR112W-AQ3E743 109 aa6.17□□□□□ -1.42
TDP1YBR223C SSA3P09435 649 aaKnown RBP6.17□□□□□ -1.42
TDP1YBR223C SEC22P22214 214 aa6.17□□□□□ -1.42
TDP1YBR223C CNB1P25296 175 aa6.17□□□□□ -1.42
TDP1YBR223C STP22P25604 385 aa6.17□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms