RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W SGN1P40561 250 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
SSH4YKL124W REE1P40893 198 aa3.98□□□□□ -1.77
SSH4YKL124W GLO1P50107 326 aa3.98□□□□□ -1.77
SSH4YKL124W RAI1P53063 387 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W RMD9P53140 646 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W MRP51Q02950 344 aa3.98□□□□□ -1.77
SSH4YKL124W CTL1Q03220 320 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W EKI1Q03764 534 aa3.98□□□□□ -1.77
SSH4YKL124W RSM24Q03976 319 aa3.98□□□□□ -1.77
SSH4YKL124W EMG1Q06287 252 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W NOP12Q08208 459 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W ENB1Q08299 606 aa3.98□□□□□ -1.77
SSH4YKL124W VAM3Q12241 283 aa3.98□□□□□ -1.77
SSH4YKL124W TDH2P00358 332 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W TDH3P00359 332 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
SSH4YKL124W SCO1P23833 295 aa3.98□□□□□ -1.77
SSH4YKL124W MRPL4P36517 319 aa3.98□□□□□ -1.77
SSH4YKL124W ECM10P39987 644 aa3.98□□□□□ -1.77
SSH4YKL124W RFC4P40339 323 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W IRC24P40580 263 aa3.98□□□□□ -1.77
SSH4YKL124W CDC40P40968 455 aaPredicted RBP3.98□□□□□ -1.77
SSH4YKL124W IRC7P43623 340 aa3.98□□□□□ -1.77
SSH4YKL124W GET1P53192 235 aa3.98□□□□□ -1.77
SSH4YKL124W COS6P53344 381 aa3.98□□□□□ -1.77
SSH4YKL124W SOK2P53438 785 aaPredicted RBP3.98□□□□□ -1.77
SSH4YKL124W FYV6P53913 173 aa3.98□□□□□ -1.77
SSH4YKL124W MTQ1P53944 314 aa3.98□□□□□ -1.77
SSH4YKL124W YPL039WQ03080 316 aa3.98□□□□□ -1.77
SSH4YKL124W KRE28Q04431 385 aa3.98□□□□□ -1.77
SSH4YKL124W GPN3Q06543 272 aa3.98□□□□□ -1.77
SSH4YKL124W MCP1Q12106 302 aa3.98□□□□□ -1.77
SSH4YKL124W YRA1Q12159 226 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W WTM1Q12363 437 aaKnown RBP3.98□□□□□ -1.77
SSH4YKL124W YDL199CQ12407 687 aa3.98□□□□□ -1.77
SSH4YKL124W HIS3P06633 220 aa3.97□□□□□ -1.77
SSH4YKL124W MATALPHA1P0CY06 175 aa3.97□□□□□ -1.77
SSH4YKL124W HMLALPHA1P0CY07 175 aa3.97□□□□□ -1.77
SSH4YKL124W AIM17P23180 465 aaKnown RBP3.97□□□□□ -1.77
SSH4YKL124W NAB2P32505 525 aaKnown RBP RIP-Chip data3.97□□□□□ -1.77not detected
SSH4YKL124W RPD3P32561 433 aa3.97□□□□□ -1.77
SSH4YKL124W CPR5P35176 225 aa3.97□□□□□ -1.77
SSH4YKL124W MRPL36P36531 177 aa3.97□□□□□ -1.77
SSH4YKL124W SLM4P38247 162 aa3.97□□□□□ -1.77
SSH4YKL124W GDT1P38301 280 aaPredicted RBP3.97□□□□□ -1.77
SSH4YKL124W ECM34P38728 170 aa3.97□□□□□ -1.77
SSH4YKL124W RRP4P38792 359 aaKnown RBP3.97□□□□□ -1.77
SSH4YKL124W SEC72P39742 193 aaKnown RBP3.97□□□□□ -1.77
SSH4YKL124W YER121WP40076 114 aa3.97□□□□□ -1.77
SSH4YKL124W YIL169CP40442 995 aa3.97□□□□□ -1.77
SSH4YKL124W PRY1P47032 299 aa3.97□□□□□ -1.77
SSH4YKL124W TOS2P50078 622 aa3.97□□□□□ -1.77
SSH4YKL124W MPC1P53157 130 aaKnown RBP3.97□□□□□ -1.77
SSH4YKL124W YGR066CP53242 292 aa3.97□□□□□ -1.77
SSH4YKL124W RVB1Q03940 463 aaKnown RBP3.97□□□□□ -1.77
SSH4YKL124W SWM1Q12379 170 aa3.97□□□□□ -1.77
SSH4YKL124W NPC2Q12408 173 aa3.97□□□□□ -1.77
SSH4YKL124W TY1A-DR3Q12441 440 aa3.97□□□□□ -1.77
SSH4YKL124W FMP16Q12497 93 aa3.97□□□□□ -1.77
SSH4YKL124W MHF2Q3E829 80 aa3.97□□□□□ -1.77
SSH4YKL124W YLR302CO13544 120 aa3.96□□□□□ -1.78
SSH4YKL124W YOL163WP0CF20 169 aa3.96□□□□□ -1.78
SSH4YKL124W RPS5P26783 225 aaKnown RBP3.96□□□□□ -1.78
SSH4YKL124W ARP2P32381 391 aaKnown RBP3.96□□□□□ -1.78
SSH4YKL124W AIM29P36154 155 aa3.96□□□□□ -1.78
SSH4YKL124W SKG1P36169 355 aa3.96□□□□□ -1.78
SSH4YKL124W YBR241CP38142 488 aa3.96□□□□□ -1.78
SSH4YKL124W FZO1P38297 855 aa3.96□□□□□ -1.78
SSH4YKL124W AME1P38313 324 aa3.96□□□□□ -1.78
SSH4YKL124W MTC4P38335 694 aaKnown RBP3.96□□□□□ -1.78
SSH4YKL124W SSH1P38353 490 aaKnown RBP3.96□□□□□ -1.78
SSH4YKL124W YER184CP39961 794 aa3.96□□□□□ -1.78
SSH4YKL124W COG3P40094 801 aa3.96□□□□□ -1.78
SSH4YKL124W MPM1P40364 252 aa3.96□□□□□ -1.78
SSH4YKL124W HXT9P40885 567 aa3.96□□□□□ -1.78
SSH4YKL124W YFR054CP43622 192 aa3.96□□□□□ -1.78
SSH4YKL124W NUP57P48837 541 aa3.96□□□□□ -1.78
SSH4YKL124W RIB4P50861 169 aaPredicted RBP3.96□□□□□ -1.78
SSH4YKL124W YGL159WP53110 370 aa3.96□□□□□ -1.78
SSH4YKL124W DAM1P53267 343 aa3.96□□□□□ -1.78
SSH4YKL124W GPI1P53306 609 aa3.96□□□□□ -1.78
SSH4YKL124W YNR071CP53757 342 aa3.96□□□□□ -1.78
SSH4YKL124W HXT11P54862 567 aa3.96□□□□□ -1.78
SSH4YKL124W SEC13Q04491 297 aaKnown RBP3.96□□□□□ -1.78
SSH4YKL124W YLR283WQ05867 314 aa3.96□□□□□ -1.78
SSH4YKL124W MRX4Q12467 430 aa3.96□□□□□ -1.78
SSH4YKL124W ILV5P06168 395 aaKnown RBP3.95□□□□□ -1.78
SSH4YKL124W FRS1P15624 595 aaKnown RBP3.95□□□□□ -1.78
SSH4YKL124W SNF6P18888 332 aa3.95□□□□□ -1.78
SSH4YKL124W ZRC1P20107 442 aa3.95□□□□□ -1.78
SSH4YKL124W MAK32P23060 363 aa3.95□□□□□ -1.78
SSH4YKL124W PTC6P25646 442 aa3.95□□□□□ -1.78
SSH4YKL124W TFC1P32367 649 aa3.95□□□□□ -1.78
SSH4YKL124W REC104P33323 182 aa3.95□□□□□ -1.78
SSH4YKL124W MRPL39P36533 70 aa3.95□□□□□ -1.78
SSH4YKL124W FIG1P38224 298 aa3.95□□□□□ -1.78
SSH4YKL124W TDP1P38319 544 aa3.95□□□□□ -1.78
SSH4YKL124W YHR180WP38868 163 aa3.95□□□□□ -1.78
SSH4YKL124W LNP1P38878 278 aa3.95□□□□□ -1.78
SSH4YKL124W FET3P38993 636 aa3.95□□□□□ -1.78
SSH4YKL124W MAM33P40513 266 aa3.95□□□□□ -1.78
Retrieved 100 of 5,963 RNA–protein pairs in 68.8 ms