RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeastyeast

Gene PRE3, Length 648 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE3YJL001W DSF2P38213 736 aa8.86□□□□□ -0.99
PRE3YJL001W YOL036WQ08206 761 aa8.86□□□□□ -0.99
PRE3YJL001W YRF1-3P0CX14 1859 aa8.85□□□□□ -0.99
PRE3YJL001W YRF1-7P0CX15 1859 aa8.85□□□□□ -0.99
PRE3YJL001W YRF1-6P53819 1859 aa8.85□□□□□ -0.99
PRE3YJL001W NAP1P25293 417 aaKnown RBP8.85□□□□□ -0.99
PRE3YJL001W TAF8Q03750 510 aa8.85□□□□□ -0.99
PRE3YJL001W ROM2P51862 1356 aaKnown RBP8.85□□□□□ -0.99
PRE3YJL001W VMA1P17255 1071 aaKnown RBP8.84□□□□□ -0.99
PRE3YJL001W NPR2P39923 615 aa8.84□□□□□ -0.99
PRE3YJL001W FOX2Q02207 900 aaKnown RBP8.84□□□□□ -0.99
PRE3YJL001W UGA2P38067 497 aa8.83□□□□□ -1
PRE3YJL001W IES2P40154 320 aa8.83□□□□□ -1
PRE3YJL001W YJL171CP46992 396 aa8.83□□□□□ -1
PRE3YJL001W SET4P42948 560 aa8.82□□□□□ -1
PRE3YJL001W LYS4P49367 693 aaPredicted RBP8.82□□□□□ -1
PRE3YJL001W SAM3Q08986 587 aa8.82□□□□□ -1
PRE3YJL001W RSF2P46974 1380 aa8.82□□□□□ -1
PRE3YJL001W NOP7P53261 605 aaKnown RBP8.81□□□□□ -1
PRE3YJL001W REF2P42073 533 aaPredicted RBP8.8□□□□□ -1
PRE3YJL001W YIL177CP40434 1758 aa8.79□□□□□ -1
PRE3YJL001W YJL225CP40889 1758 aa8.79□□□□□ -1
PRE3YJL001W SSA2P10592 639 aaKnown RBP8.79□□□□□ -1
PRE3YJL001W PTC3P34221 468 aaKnown RBP8.79□□□□□ -1
PRE3YJL001W ESL2P36168 1195 aa8.78□□□□□ -1
PRE3YJL001W ALD2P47771 506 aa8.78□□□□□ -1
PRE3YJL001W CTH1P47976 325 aa8.78□□□□□ -1
PRE3YJL001W TRP5P00931 707 aaKnown RBP8.77□□□□□ -1.01
PRE3YJL001W DMA2P53924 522 aa8.77□□□□□ -1.01
PRE3YJL001W TCB1Q12466 1186 aa8.77□□□□□ -1.01
PRE3YJL001W MAM3Q12296 706 aa8.76□□□□□ -1.01
PRE3YJL001W APC1P53886 1748 aa8.75□□□□□ -1.01
PRE3YJL001W SLM3Q12093 417 aa8.75□□□□□ -1.01
PRE3YJL001W YEF3P16521 1044 aaKnown RBP8.74□□□□□ -1.01
PRE3YJL001W YJL181WP46987 611 aa8.74□□□□□ -1.01
PRE3YJL001W YNR021WP53723 404 aaKnown RBP8.74□□□□□ -1.01
PRE3YJL001W RTG1P32607 177 aa8.73□□□□□ -1.01
PRE3YJL001W BMT6Q12291 365 aa8.73□□□□□ -1.01
PRE3YJL001W SNF2P22082 1703 aa8.72□□□□□ -1.01
PRE3YJL001W PRP40P33203 583 aaKnown RBP8.71□□□□□ -1.02
PRE3YJL001W YKR075CP36155 307 aa8.71□□□□□ -1.02
PRE3YJL001W PRP43P53131 767 aaKnown RBP8.71□□□□□ -1.02
PRE3YJL001W YNL035CP53962 389 aaKnown RBP8.71□□□□□ -1.02
PRE3YJL001W LAM6Q08001 693 aa8.71□□□□□ -1.02
PRE3YJL001W COBP00163 385 aa8.7□□□□□ -1.02
PRE3YJL001W MAK21Q12176 1025 aaKnown RBP8.7□□□□□ -1.02
PRE3YJL001W SEC61P32915 480 aa8.69□□□□□ -1.02
PRE3YJL001W YKL133CP36066 463 aa8.69□□□□□ -1.02
PRE3YJL001W GYP5Q12344 894 aa8.68□□□□□ -1.02
PRE3YJL001W YRF1-4O13559 1382 aa8.67□□□□□ -1.02
PRE3YJL001W COX6P00427 148 aa8.67□□□□□ -1.02
PRE3YJL001W KIN1P13185 1064 aa8.67□□□□□ -1.02
PRE3YJL001W NCR1Q12200 1170 aa8.67□□□□□ -1.02
PRE3YJL001W SPE2P21182 396 aa8.66□□□□□ -1.02
PRE3YJL001W GLC3P32775 704 aa8.66□□□□□ -1.02
PRE3YJL001W XKS1P42826 600 aa8.66□□□□□ -1.02
PRE3YJL001W ATH1P48016 1211 aa8.66□□□□□ -1.02
PRE3YJL001W TOM1Q03280 3268 aa8.65□□□□□ -1.02
PRE3YJL001W CSE4P36012 229 aa8.65□□□□□ -1.02
PRE3YJL001W MTR4P47047 1073 aaKnown RBP8.65□□□□□ -1.02
PRE3YJL001W NUP42P49686 430 aaKnown RBP8.65□□□□□ -1.02
PRE3YJL001W LEU2P04173 364 aaPredicted RBP8.64□□□□□ -1.03
PRE3YJL001W RPS24AP0CX31 135 aaKnown RBP8.64□□□□□ -1.03
PRE3YJL001W RPS24BP0CX32 135 aaKnown RBP8.64□□□□□ -1.03
PRE3YJL001W DIT2P21595 489 aa8.64□□□□□ -1.03
PRE3YJL001W GRE2Q12068 342 aaKnown RBP8.64□□□□□ -1.03
PRE3YJL001W ENP1P38333 483 aaKnown RBP8.63□□□□□ -1.03
PRE3YJL001W RRD1P40454 393 aaKnown RBP8.63□□□□□ -1.03
PRE3YJL001W JIP4Q03361 876 aa8.63□□□□□ -1.03
PRE3YJL001W AIM7Q12156 149 aa8.63□□□□□ -1.03
PRE3YJL001W YLR419WQ06698 1435 aaKnown RBP8.63□□□□□ -1.03
PRE3YJL001W HTA1P04911 132 aaKnown RBP8.62□□□□□ -1.03
PRE3YJL001W HTA2P04912 132 aa8.62□□□□□ -1.03
PRE3YJL001W GUT1P32190 709 aa8.62□□□□□ -1.03
PRE3YJL001W VHR2P40041 505 aa8.62□□□□□ -1.03
PRE3YJL001W RIM15P43565 1770 aa8.62□□□□□ -1.03
PRE3YJL001W KIP3P53086 805 aaKnown RBP8.61□□□□□ -1.03
PRE3YJL001W YML133CQ03099 1374 aa8.61□□□□□ -1.03
PRE3YJL001W YLL067CQ07888 1374 aa8.61□□□□□ -1.03
PRE3YJL001W YLL066CQ99208 1374 aa8.61□□□□□ -1.03
PRE3YJL001W SPT7P35177 1332 aa8.6□□□□□ -1.03
PRE3YJL001W TFG1P41895 735 aaPredicted RBP8.59□□□□□ -1.03
PRE3YJL001W DAN4P47179 1161 aa8.59□□□□□ -1.03
PRE3YJL001W DCW1P36091 449 aa8.58□□□□□ -1.04
PRE3YJL001W UBP14P38237 781 aaKnown RBP8.58□□□□□ -1.04
PRE3YJL001W FRK1Q03002 865 aaPredicted RBP8.58□□□□□ -1.04
PRE3YJL001W SIR4P11978 1358 aa8.57□□□□□ -1.04
PRE3YJL001W CHZ1P40019 153 aaPredicted RBP8.56□□□□□ -1.04
PRE3YJL001W ATF2P53296 535 aa8.56□□□□□ -1.04
PRE3YJL001W ALD3P54114 506 aa8.56□□□□□ -1.04
PRE3YJL001W YDR090CQ03193 310 aa8.56□□□□□ -1.04
PRE3YJL001W PTC4P38089 393 aa8.55□□□□□ -1.04
PRE3YJL001W ADE16P54113 591 aaKnown RBP8.55□□□□□ -1.04
PRE3YJL001W YLR326WQ06170 240 aaKnown RBP8.55□□□□□ -1.04
PRE3YJL001W KIC1P38692 1080 aa8.54□□□□□ -1.04
PRE3YJL001W YEL023CP39992 682 aa8.54□□□□□ -1.04
PRE3YJL001W EAF6P47128 113 aa8.54□□□□□ -1.04
PRE3YJL001W YGR273CP53329 174 aa8.54□□□□□ -1.04
PRE3YJL001W MEC3Q02574 474 aa8.53□□□□□ -1.04
PRE3YJL001W RPO41P13433 1351 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms