RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W RPN1P38764 993 aaKnown RBP8.02□□□□□ -1.13
RPN11YFR004W DMA2P53924 522 aa8.01□□□□□ -1.13
RPN11YFR004W ENP1P38333 483 aaKnown RBP8□□□□□ -1.13
RPN11YFR004W XKS1P42826 600 aa8□□□□□ -1.13
RPN11YFR004W MTR4P47047 1073 aaKnown RBP8□□□□□ -1.13
RPN11YFR004W ORC1P54784 914 aaPredicted RBP8□□□□□ -1.13
RPN11YFR004W CSE4P36012 229 aa7.99□□□□□ -1.13
RPN11YFR004W RIM15P43565 1770 aa7.99□□□□□ -1.13
RPN11YFR004W YLR419WQ06698 1435 aaKnown RBP7.98□□□□□ -1.13
RPN11YFR004W LEU2P04173 364 aaPredicted RBP7.98□□□□□ -1.13
RPN11YFR004W SPE2P21182 396 aa7.98□□□□□ -1.13
RPN11YFR004W NOP2P40991 618 aaKnown RBP7.98□□□□□ -1.13
RPN11YFR004W RPS24AP0CX31 135 aaKnown RBP7.97□□□□□ -1.13
RPN11YFR004W RPS24BP0CX32 135 aaKnown RBP7.97□□□□□ -1.13
RPN11YFR004W ALD3P54114 506 aa7.97□□□□□ -1.13
RPN11YFR004W SEC3P33332 1336 aaKnown RBP7.96□□□□□ -1.14
RPN11YFR004W YOR238WQ08634 303 aa7.94□□□□□ -1.14
RPN11YFR004W SIR4P11978 1358 aa7.94□□□□□ -1.14
RPN11YFR004W YAP5P40574 245 aa7.93□□□□□ -1.14
RPN11YFR004W EAF6P47128 113 aa7.92□□□□□ -1.14
RPN11YFR004W KIP3P53086 805 aaKnown RBP7.92□□□□□ -1.14
RPN11YFR004W MEC3Q02574 474 aa7.92□□□□□ -1.14
RPN11YFR004W FRK1Q03002 865 aaPredicted RBP7.92□□□□□ -1.14
RPN11YFR004W MSB4Q12317 492 aa7.91□□□□□ -1.14
RPN11YFR004W MHP1P43638 1398 aa7.91□□□□□ -1.14
RPN11YFR004W YML133CQ03099 1374 aa7.9□□□□□ -1.14
RPN11YFR004W YLL067CQ07888 1374 aa7.9□□□□□ -1.14
RPN11YFR004W YLL066CQ99208 1374 aa7.9□□□□□ -1.14
RPN11YFR004W RTG3P38165 486 aa7.9□□□□□ -1.14
RPN11YFR004W TOS1P38288 455 aa7.89□□□□□ -1.15
RPN11YFR004W UBP9P39967 754 aa7.89□□□□□ -1.15
RPN11YFR004W CHZ1P40019 153 aaPredicted RBP7.89□□□□□ -1.15
RPN11YFR004W ADE16P54113 591 aaKnown RBP7.89□□□□□ -1.15
RPN11YFR004W RAM2P29703 316 aa7.88□□□□□ -1.15
RPN11YFR004W SAP155P43612 1002 aa7.88□□□□□ -1.15
RPN11YFR004W YPR148CQ06523 435 aa7.88□□□□□ -1.15
RPN11YFR004W BUG1Q12191 341 aa7.88□□□□□ -1.15
RPN11YFR004W RPO41P13433 1351 aaKnown RBP7.87□□□□□ -1.15
RPN11YFR004W RCR1P38212 213 aa7.87□□□□□ -1.15
RPN11YFR004W UTP22P53254 1237 aaPredicted RBP7.87□□□□□ -1.15
RPN11YFR004W RAD4P14736 754 aa7.86□□□□□ -1.15
RPN11YFR004W SSA4P22202 642 aaKnown RBP7.85□□□□□ -1.15
RPN11YFR004W MSN5P52918 1224 aa7.85□□□□□ -1.15
RPN11YFR004W CTT1P06115 562 aa7.84□□□□□ -1.15
RPN11YFR004W GRE2Q12068 342 aaKnown RBP7.84□□□□□ -1.15
RPN11YFR004W DPS1P04802 557 aaKnown RBP7.83□□□□□ -1.16
RPN11YFR004W MST1P07236 462 aa7.83□□□□□ -1.16
RPN11YFR004W YER156CP40093 338 aaKnown RBP7.83□□□□□ -1.16
RPN11YFR004W SET1P38827 1080 aaKnown RBP7.82□□□□□ -1.16
RPN11YFR004W PEX21P50091 288 aa7.82□□□□□ -1.16
RPN11YFR004W PIB1Q06651 286 aa7.82□□□□□ -1.16
RPN11YFR004W TOM1Q03280 3268 aa7.81□□□□□ -1.16
RPN11YFR004W ERT1P38140 529 aa7.81□□□□□ -1.16
RPN11YFR004W YMR1P47147 688 aaKnown RBP RIP-Chip data7.81□□□□□ -1.16not detected
RPN11YFR004W KIN4Q01919 800 aa7.81□□□□□ -1.16
RPN11YFR004W PUS5Q06244 254 aa7.81□□□□□ -1.16
RPN11YFR004W ATG13Q06628 738 aa7.81□□□□□ -1.16
RPN11YFR004W GRX1P25373 110 aaKnown RBP7.8□□□□□ -1.16
RPN11YFR004W SPB4P25808 606 aaPredicted RBP7.8□□□□□ -1.16
RPN11YFR004W PRS1P32895 427 aaKnown RBP7.8□□□□□ -1.16
RPN11YFR004W YKL222CP35995 705 aa7.8□□□□□ -1.16
RPN11YFR004W SQS1P53866 767 aaKnown RBP7.8□□□□□ -1.16
RPN11YFR004W HPC2Q01448 625 aa7.8□□□□□ -1.16
RPN11YFR004W PDS5Q04264 1277 aa7.8□□□□□ -1.16
RPN11YFR004W RLF2Q12495 606 aa7.8□□□□□ -1.16
RPN11YFR004W VPS70P47161 811 aa7.79□□□□□ -1.16
RPN11YFR004W GAS4Q08271 471 aa7.79□□□□□ -1.16
RPN11YFR004W MLP1Q02455 1875 aaKnown RBP7.79□□□□□ -1.16
RPN11YFR004W VPS29P38759 282 aa7.78□□□□□ -1.16
RPN11YFR004W NST1P53935 1240 aa7.78□□□□□ -1.16
RPN11YFR004W PDI1P17967 522 aaKnown RBP7.77□□□□□ -1.17
RPN11YFR004W DBP1P24784 617 aaKnown RBP7.77□□□□□ -1.17
RPN11YFR004W SCT1P32784 759 aa7.77□□□□□ -1.17
RPN11YFR004W RTF1P53064 558 aa7.77□□□□□ -1.17
RPN11YFR004W RIX7Q07844 837 aaKnown RBP7.77□□□□□ -1.17
RPN11YFR004W OSM1P21375 501 aaKnown RBP7.76□□□□□ -1.17
RPN11YFR004W RRT14P40470 206 aa7.76□□□□□ -1.17
RPN11YFR004W INP54Q08227 384 aaKnown RBP7.76□□□□□ -1.17
RPN11YFR004W AUS1Q08409 1394 aa7.75□□□□□ -1.17
RPN11YFR004W CWH41P53008 833 aa7.75□□□□□ -1.17
RPN11YFR004W FKH1P40466 484 aa7.74□□□□□ -1.17
RPN11YFR004W FPK1P53739 893 aa7.74□□□□□ -1.17
RPN11YFR004W UTP10P42945 1769 aaKnown RBP7.72□□□□□ -1.17
RPN11YFR004W GRX4P32642 244 aa7.72□□□□□ -1.17
RPN11YFR004W DSF2P38213 736 aa7.72□□□□□ -1.17
RPN11YFR004W WSC3Q12215 556 aa7.72□□□□□ -1.17
RPN11YFR004W YBL029C-AQ3E756 94 aa7.72□□□□□ -1.17
RPN11YFR004W TAP42Q04372 366 aa7.71□□□□□ -1.18
RPN11YFR004W NYV1Q12255 253 aa7.71□□□□□ -1.18
RPN11YFR004W STS1P38637 319 aa7.7□□□□□ -1.18
RPN11YFR004W YBP2P53169 641 aa7.7□□□□□ -1.18
RPN11YFR004W TUM1Q08686 304 aaKnown RBP7.69□□□□□ -1.18
RPN11YFR004W PFF1P38244 976 aa7.68□□□□□ -1.18
RPN11YFR004W RPS9BP05755 195 aaKnown RBP7.67□□□□□ -1.18
RPN11YFR004W NUP145P49687 1317 aa7.67□□□□□ -1.18
RPN11YFR004W SMY1P32364 656 aaKnown RBP7.66□□□□□ -1.18
RPN11YFR004W FUN12P39730 1002 aaKnown RBP7.66□□□□□ -1.18
RPN11YFR004W DUS1P53759 423 aaKnown RBP7.66□□□□□ -1.18
RPN11YFR004W KIN1P13185 1064 aa7.65□□□□□ -1.18
RPN11YFR004W SLI15P38283 698 aa7.65□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms