RNA–Protein interactions for RNA: ENST00000617806.4

BECN1-222, Transcript of beclin 1, human

TSL 5

Gene BECN1, Length 4,865 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BECN1-222	ENST00000617806	CGNL1	Q0VF96	1302 aa		14.03	□□□□□ -0.16
BECN1-222	ENST00000617806	SOX12	O15370	315 aa		14.03	□□□□□ -0.16
BECN1-222	ENST00000617806	NAP1L2	Q9ULW6	460 aa	Predicted RBP	14.02	□□□□□ -0.16
BECN1-222	ENST00000617806	RRBP1	Q9P2E9	1410 aa	Known RBP	14.02	□□□□□ -0.16
BECN1-222	ENST00000617806		E9PSI1	815 aa		14.02	□□□□□ -0.16
BECN1-222	ENST00000617806	NRDC	O43847	1150 aa		14.02	□□□□□ -0.17
BECN1-222	ENST00000617806	FGD6	Q6ZV73	1430 aa		14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	AKNA	Q7Z591	1439 aa		14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	CCDC184	Q52MB2	194 aa		14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	DDX49	Q9Y6V7	483 aa	Known RBP	14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	SYAP1	Q96A49	352 aa	Predicted RBP	14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	ATAD2B	Q9ULI0	1458 aa		14.01	□□□□□ -0.17
BECN1-222	ENST00000617806	LRRC9	Q6ZRR7	1453 aa		14	□□□□□ -0.17
BECN1-222	ENST00000617806	HAP1	P54257	671 aa	Predicted RBP	14	□□□□□ -0.17
BECN1-222	ENST00000617806	CDCA7L	Q96GN5	454 aa		14	□□□□□ -0.17
BECN1-222	ENST00000617806	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.99	□□□□□ -0.17
BECN1-222	ENST00000617806	NOL8	Q76FK4	1167 aa	Known RBP	13.99	□□□□□ -0.17
BECN1-222	ENST00000617806	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.99	□□□□□ -0.17
BECN1-222	ENST00000617806	EIF3A	Q14152	1382 aa	Known RBP	13.99	□□□□□ -0.17
BECN1-222	ENST00000617806	ARAP1	Q96P48	1450 aa		13.99	□□□□□ -0.17
BECN1-222	ENST00000617806	GGT6	Q6P531	493 aa		13.98	□□□□□ -0.17
BECN1-222	ENST00000617806	IGF1R	P08069	1367 aa		13.98	□□□□□ -0.17
BECN1-222	ENST00000617806	FRAT2	O75474	233 aa	Predicted RBP	13.97	□□□□□ -0.17
BECN1-222	ENST00000617806	CCDC144A	A2RUR9	1427 aa		13.97	□□□□□ -0.17
BECN1-222	ENST00000617806	KIAA1211	Q6ZU35	1233 aa		13.97	□□□□□ -0.17
BECN1-222	ENST00000617806	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.97	□□□□□ -0.17
BECN1-222	ENST00000617806	CHMP5	Q9NZZ3	219 aa		13.96	□□□□□ -0.17
BECN1-222	ENST00000617806	CADPS	Q9ULU8	1353 aa		13.96	□□□□□ -0.17
BECN1-222	ENST00000617806	ZKSCAN2	Q63HK3	967 aa		13.96	□□□□□ -0.17
BECN1-222	ENST00000617806	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.96	□□□□□ -0.18
BECN1-222	ENST00000617806	ANKRD45	Q5TZF3	282 aa		13.95	□□□□□ -0.18
BECN1-222	ENST00000617806	CARMIL2	Q6F5E8	1435 aa		13.95	□□□□□ -0.18
BECN1-222	ENST00000617806	BACH2	Q9BYV9	841 aa		13.95	□□□□□ -0.18
BECN1-222	ENST00000617806	ST18	O60284	1047 aa		13.95	□□□□□ -0.18
BECN1-222	ENST00000617806	RTF1	Q92541	710 aa	Known RBP	13.95	□□□□□ -0.18
BECN1-222	ENST00000617806	WDR97	A6NE52	1622 aa		13.94	□□□□□ -0.18
BECN1-222	ENST00000617806	TRIM6-TRIM34	B2RNG4	842 aa		13.94	□□□□□ -0.18
BECN1-222	ENST00000617806	MYOM3	Q5VTT5	1437 aa		13.94	□□□□□ -0.18
BECN1-222	ENST00000617806		A0A0G2JS52	829 aa		13.93	□□□□□ -0.18
BECN1-222	ENST00000617806	ELL2	O00472	640 aa	Predicted RBP	13.92	□□□□□ -0.18
BECN1-222	ENST00000617806	BRD4	O60885	1362 aa	Predicted RBP	13.92	□□□□□ -0.18
BECN1-222	ENST00000617806	ZNF644	Q9H582	1327 aa	Predicted RBP	13.92	□□□□□ -0.18
BECN1-222	ENST00000617806	TRAK1	Q9UPV9	953 aa		13.92	□□□□□ -0.18
BECN1-222	ENST00000617806	KIF3B	O15066	747 aa		13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	EFCAB2	Q5VUJ9	269 aa		13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	PANK1	Q8TE04	598 aa		13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	ADAMTS8	Q9UP79	889 aa		13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	SLC4A10	Q6U841	1118 aa		13.91	□□□□□ -0.18
BECN1-222	ENST00000617806	FAM13B	Q9NYF5	915 aa		13.9	□□□□□ -0.18
BECN1-222	ENST00000617806	FAM43A	Q8N2R8	423 aa		13.9	□□□□□ -0.18
BECN1-222	ENST00000617806	HMMR	O75330	724 aa		13.9	□□□□□ -0.19
BECN1-222	ENST00000617806	NBPF8	Q3BBV2	869 aa		13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	PNISR	Q8TF01	805 aa	Known RBP	13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	RSPH4A	Q5TD94	716 aa		13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	C22orf23	Q9BZE7	217 aa		13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	LMOD2	Q6P5Q4	547 aa		13.89	□□□□□ -0.19
BECN1-222	ENST00000617806	DZIP1L	Q8IYY4	767 aa	Known RBP	13.88	□□□□□ -0.19
BECN1-222	ENST00000617806	PHF14	O94880	888 aa		13.87	□□□□□ -0.19
BECN1-222	ENST00000617806	TERF2IP	Q9NYB0	399 aa		13.87	□□□□□ -0.19
BECN1-222	ENST00000617806	ERCC6	Q03468	1493 aa		13.87	□□□□□ -0.19
BECN1-222	ENST00000617806	SMG6	Q86US8	1419 aa	Known RBP	13.87	□□□□□ -0.19
BECN1-222	ENST00000617806	DDX19B	Q9UMR2	479 aa		13.87	□□□□□ -0.19
BECN1-222	ENST00000617806	MRE11	P49959	708 aa		13.86	□□□□□ -0.19
BECN1-222	ENST00000617806	STK31	Q9BXU1	1019 aa		13.86	□□□□□ -0.19
BECN1-222	ENST00000617806	PDS5B	Q9NTI5	1447 aa		13.85	□□□□□ -0.19
BECN1-222	ENST00000617806	TRAK2	O60296	914 aa		13.85	□□□□□ -0.19
BECN1-222	ENST00000617806	LNPK	Q9C0E8	428 aa		13.85	□□□□□ -0.19
BECN1-222	ENST00000617806	NCOA2	Q15596	1464 aa		13.84	□□□□□ -0.19
BECN1-222	ENST00000617806	SYNJ1	O43426	1573 aa		13.84	□□□□□ -0.19
BECN1-222	ENST00000617806	NGEF	Q8N5V2	710 aa		13.84	□□□□□ -0.19
BECN1-222	ENST00000617806	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
BECN1-222	ENST00000617806	SPAG9	O60271	1321 aa	Known RBP	13.83	□□□□□ -0.2
BECN1-222	ENST00000617806	CUX1	P39880	1505 aa		13.83	□□□□□ -0.2
BECN1-222	ENST00000617806	HTATSF1	O43719	755 aa	Known RBP	13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	CSPP1	Q1MSJ5	1256 aa		13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	RILPL2	Q969X0	211 aa		13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	ERICH3	Q5RHP9	1530 aa		13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	CASKIN1	Q8WXD9	1431 aa		13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	FGD5	Q6ZNL6	1462 aa		13.82	□□□□□ -0.2
BECN1-222	ENST00000617806	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	JPH4	Q96JJ6	628 aa		13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	MLEC	Q14165	292 aa		13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	MCTP1	Q6DN14	999 aa		13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	RUNDC1	Q96C34	613 aa		13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	PKNOX2	Q96KN3	472 aa		13.81	□□□□□ -0.2
BECN1-222	ENST00000617806	MIA2	Q96PC5	1412 aa		13.8	□□□□□ -0.2
BECN1-222	ENST00000617806	LMOD3	Q0VAK6	560 aa		13.8	□□□□□ -0.2
BECN1-222	ENST00000617806	BCAR3	O75815	825 aa		13.8	□□□□□ -0.2
BECN1-222	ENST00000617806	GNL2	Q13823	731 aa	Known RBP	13.8	□□□□□ -0.2
BECN1-222	ENST00000617806	NASP	P49321	788 aa	Predicted RBP	13.79	□□□□□ -0.2
BECN1-222	ENST00000617806	SKAP1	Q86WV1	359 aa		13.79	□□□□□ -0.2
BECN1-222	ENST00000617806	KIF16B	Q96L93	1317 aa		13.79	□□□□□ -0.2
BECN1-222	ENST00000617806	PDZRN3	Q9UPQ7	1066 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	TNNT3	P45378	269 aa	Predicted RBP	13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	PRX	Q9BXM0	1461 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	HFM1	A2PYH4	1435 aa		13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms