RNA–Protein interactions for RNA: ENST00000613916.1

PVT1-222, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 137 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-222	ENST00000613916	NPAT	Q14207	1427 aa		10.96	□□□□□ -0.65
PVT1-222	ENST00000613916	CNTLN	Q9NXG0	1405 aa		10.96	□□□□□ -0.65
PVT1-222	ENST00000613916	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.96	□□□□□ -0.65
PVT1-222	ENST00000613916	MAST1	Q9Y2H9	1570 aa		10.95	□□□□□ -0.66
PVT1-222	ENST00000613916	SHANK2	Q9UPX8	1470 aa		10.95	□□□□□ -0.66
PVT1-222	ENST00000613916	EFCAB2	Q5VUJ9	269 aa		10.95	□□□□□ -0.66
PVT1-222	ENST00000613916	PLA2R1	Q13018	1463 aa		10.94	□□□□□ -0.66
PVT1-222	ENST00000613916	ROCK1	Q13464	1354 aa		10.94	□□□□□ -0.66
PVT1-222	ENST00000613916	DHX57	Q6P158	1386 aa	Known RBP	10.94	□□□□□ -0.66
PVT1-222	ENST00000613916	CHIC2	Q9UKJ5	165 aa		10.94	□□□□□ -0.66
PVT1-222	ENST00000613916	KIAA1107	Q9UPP5	1409 aa		10.93	□□□□□ -0.66
PVT1-222	ENST00000613916	CCER1	Q8TC90	406 aa	Predicted RBP	10.93	□□□□□ -0.66
PVT1-222	ENST00000613916	CCDC141	Q6ZP82	1450 aa		10.93	□□□□□ -0.66
PVT1-222	ENST00000613916	PLEKHH2	Q8IVE3	1493 aa		10.93	□□□□□ -0.66
PVT1-222	ENST00000613916	MYO3A	Q8NEV4	1616 aa		10.92	□□□□□ -0.66
PVT1-222	ENST00000613916	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.92	□□□□□ -0.66
PVT1-222	ENST00000613916	RRP7BP	Q9NSQ0	103 aa		10.92	□□□□□ -0.66
PVT1-222	ENST00000613916	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.91	□□□□□ -0.66
PVT1-222	ENST00000613916	KIDINS220	Q9ULH0	1771 aa		10.91	□□□□□ -0.66
PVT1-222	ENST00000613916	UBAP1L	F5GYI3	381 aa		10.91	□□□□□ -0.66
PVT1-222	ENST00000613916	AFAP1	Q8N556	730 aa		10.91	□□□□□ -0.66
PVT1-222	ENST00000613916	PLXNC1	O60486	1568 aa		10.9	□□□□□ -0.67
PVT1-222	ENST00000613916	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.9	□□□□□ -0.67
PVT1-222	ENST00000613916	ZEB1	P37275	1124 aa	Predicted RBP	10.88	□□□□□ -0.67
PVT1-222	ENST00000613916	RSPH4A	Q5TD94	716 aa		10.88	□□□□□ -0.67
PVT1-222	ENST00000613916	INO80	Q9ULG1	1556 aa	Predicted RBP	10.87	□□□□□ -0.67
PVT1-222	ENST00000613916	PKD2	Q13563	968 aa		10.87	□□□□□ -0.67
PVT1-222	ENST00000613916	ESF1	Q9H501	851 aa	Known RBP	10.87	□□□□□ -0.67
PVT1-222	ENST00000613916	ANKRD30A	Q9BXX3	1397 aa		10.87	□□□□□ -0.67
PVT1-222	ENST00000613916	CPS1	P31327	1500 aa		10.86	□□□□□ -0.67
PVT1-222	ENST00000613916	CLSPN	Q9HAW4	1339 aa		10.85	□□□□□ -0.67
PVT1-222	ENST00000613916	ZMYM3	Q14202	1370 aa		10.85	□□□□□ -0.67
PVT1-222	ENST00000613916	NCKAP5L	Q9HCH0	1330 aa		10.84	□□□□□ -0.67
PVT1-222	ENST00000613916	TSPY4	P0CV99	314 aa		10.84	□□□□□ -0.67
PVT1-222	ENST00000613916	TSPY10	P0CW01	314 aa		10.84	□□□□□ -0.67
PVT1-222	ENST00000613916	HSPA1L	P34931	641 aa		10.84	□□□□□ -0.67
PVT1-222	ENST00000613916	CLTC	Q00610	1675 aa	Known RBP	10.83	□□□□□ -0.68
PVT1-222	ENST00000613916	KIF15	Q9NS87	1388 aa		10.83	□□□□□ -0.68
PVT1-222	ENST00000613916	ALK	Q9UM73	1620 aa		10.83	□□□□□ -0.68
PVT1-222	ENST00000613916	ATP7A	Q04656	1500 aa		10.83	□□□□□ -0.68
PVT1-222	ENST00000613916	ANKRD50	Q9ULJ7	1429 aa		10.83	□□□□□ -0.68
PVT1-222	ENST00000613916	NEURL4	Q96JN8	1562 aa		10.82	□□□□□ -0.68
PVT1-222	ENST00000613916	POLR1A	O95602	1720 aa	Predicted RBP	10.82	□□□□□ -0.68
PVT1-222	ENST00000613916	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.82	□□□□□ -0.68
PVT1-222	ENST00000613916	UNC13B	O14795	1591 aa		10.82	□□□□□ -0.68
PVT1-222	ENST00000613916	KDM5D	Q9BY66	1539 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	DUOX2	Q9NRD8	1548 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	MYT1L	Q9UL68	1186 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	PPP6R1	Q9UPN7	881 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	A2ML1	A8K2U0	1454 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	PZP	P20742	1482 aa		10.81	□□□□□ -0.68
PVT1-222	ENST00000613916	ACIN1	Q9UKV3	1341 aa	Known RBP	10.79	□□□□□ -0.68
PVT1-222	ENST00000613916	VWDE	Q8N2E2	1590 aa		10.78	□□□□□ -0.68
PVT1-222	ENST00000613916	DEPDC5	O75140	1603 aa		10.78	□□□□□ -0.68
PVT1-222	ENST00000613916	TOM1	O60784	492 aa		10.78	□□□□□ -0.68
PVT1-222	ENST00000613916	SPAG9	O60271	1321 aa	Known RBP	10.78	□□□□□ -0.68
PVT1-222	ENST00000613916	IQGAP3	Q86VI3	1631 aa		10.77	□□□□□ -0.68
PVT1-222	ENST00000613916	EIF2AK4	Q9P2K8	1649 aa	Known RBP	10.77	□□□□□ -0.68
PVT1-222	ENST00000613916	ERBIN	Q96RT1	1412 aa		10.76	□□□□□ -0.69
PVT1-222	ENST00000613916	A2M	P01023	1474 aa		10.76	□□□□□ -0.69
PVT1-222	ENST00000613916	TRIM52	Q96A61	297 aa		10.76	□□□□□ -0.69
PVT1-222	ENST00000613916	MPHOSPH9	Q99550	1183 aa		10.76	□□□□□ -0.69
PVT1-222	ENST00000613916	PIP4K2B	P78356	416 aa		10.75	□□□□□ -0.69
PVT1-222	ENST00000613916	PHF23	Q9BUL5	403 aa	Predicted RBP	10.75	□□□□□ -0.69
PVT1-222	ENST00000613916	RNF17	Q9BXT8	1623 aa	Known RBP	10.75	□□□□□ -0.69
PVT1-222	ENST00000613916	SCAF1	Q9H7N4	1312 aa	Known RBP	10.75	□□□□□ -0.69
PVT1-222	ENST00000613916	FAM135A	Q9P2D6	1515 aa		10.74	□□□□□ -0.69
PVT1-222	ENST00000613916	SYNM	O15061	1565 aa		10.74	□□□□□ -0.69
PVT1-222	ENST00000613916	MROH1	Q8NDA8	1641 aa		10.74	□□□□□ -0.69
PVT1-222	ENST00000613916	MED14	O60244	1454 aa		10.74	□□□□□ -0.69
PVT1-222	ENST00000613916	SIN3A	Q96ST3	1273 aa		10.73	□□□□□ -0.69
PVT1-222	ENST00000613916		E9PCH4	1651 aa		10.71	□□□□□ -0.69
PVT1-222	ENST00000613916	NUP155	O75694	1391 aa		10.71	□□□□□ -0.69
PVT1-222	ENST00000613916	CEP152	O94986	1710 aa		10.71	□□□□□ -0.69
PVT1-222	ENST00000613916	DHX29	Q7Z478	1369 aa	Known RBP	10.71	□□□□□ -0.69
PVT1-222	ENST00000613916	ANKRD30B	Q9BXX2	1392 aa		10.71	□□□□□ -0.69
PVT1-222	ENST00000613916	TET3	O43151	1660 aa		10.7	□□□□□ -0.7
PVT1-222	ENST00000613916	FOXD1	Q16676	465 aa		10.7	□□□□□ -0.7
PVT1-222	ENST00000613916	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.7	□□□□□ -0.7
PVT1-222	ENST00000613916	CFAP65	Q6ZU64	1925 aa	Known RBP	10.7	□□□□□ -0.7
PVT1-222	ENST00000613916	STRCP1	A6NGW2	1772 aa		10.7	□□□□□ -0.7
PVT1-222	ENST00000613916	IQGAP1	P46940	1657 aa		10.69	□□□□□ -0.7
PVT1-222	ENST00000613916	PRDM15	P57071	1507 aa	Predicted RBP	10.69	□□□□□ -0.7
PVT1-222	ENST00000613916	LRRC7	Q96NW7	1537 aa		10.69	□□□□□ -0.7
PVT1-222	ENST00000613916	RGS17	Q9UGC6	210 aa	Predicted RBP	10.69	□□□□□ -0.7
PVT1-222	ENST00000613916	NLRP1	Q9C000	1473 aa		10.68	□□□□□ -0.7
PVT1-222	ENST00000613916	NPHP4	O75161	1426 aa	Predicted RBP	10.68	□□□□□ -0.7
PVT1-222	ENST00000613916	TNR	Q92752	1358 aa		10.68	□□□□□ -0.7
PVT1-222	ENST00000613916	SPHKAP	Q2M3C7	1700 aa		10.67	□□□□□ -0.7
PVT1-222	ENST00000613916	NEUROD1	Q13562	356 aa		10.67	□□□□□ -0.7
PVT1-222	ENST00000613916	GGT6	Q6P531	493 aa		10.67	□□□□□ -0.7
PVT1-222	ENST00000613916	RPRD2	Q5VT52	1461 aa	Known RBP	10.67	□□□□□ -0.7
PVT1-222	ENST00000613916	UGGT1	Q9NYU2	1555 aa		10.66	□□□□□ -0.7
PVT1-222	ENST00000613916	ZC3H13	Q5T200	1668 aa	Known RBP	10.66	□□□□□ -0.7
PVT1-222	ENST00000613916	ANKLE2	Q86XL3	938 aa		10.65	□□□□□ -0.7
PVT1-222	ENST00000613916	TIMELESS	Q9UNS1	1208 aa		10.65	□□□□□ -0.7
PVT1-222	ENST00000613916	KIF3B	O15066	747 aa		10.64	□□□□□ -0.71
PVT1-222	ENST00000613916	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.64	□□□□□ -0.71	6e-6	■□□□□ 11
PVT1-222	ENST00000613916	LMTK2	Q8IWU2	1503 aa		10.63	□□□□□ -0.71
PVT1-222	ENST00000613916	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms