RNA–Protein interactions for RNA: ENST00000606715.3

SHANK2-219, Transcript of SH3 and multiple ankyrin repeat domains 2, human

Gene SHANK2, Length 5,738 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHANK2-219	ENST00000606715	DNTTIP2	Q5QJE6	756 aa	Known RBP	14	□□□□□ -0.17
SHANK2-219	ENST00000606715	CASKIN1	Q8WXD9	1431 aa		13.99	□□□□□ -0.17
SHANK2-219	ENST00000606715	EFCAB5	A4FU69	1503 aa		13.99	□□□□□ -0.17
SHANK2-219	ENST00000606715	FRAT2	O75474	233 aa	Predicted RBP	13.99	□□□□□ -0.17
SHANK2-219	ENST00000606715	TOP2B	Q02880	1626 aa		13.99	□□□□□ -0.17
SHANK2-219	ENST00000606715	HSP90AB1	P08238	724 aa	Known RBP	13.99	□□□□□ -0.17
SHANK2-219	ENST00000606715	PLEKHH2	Q8IVE3	1493 aa		13.98	□□□□□ -0.17
SHANK2-219	ENST00000606715	RGS3	P49796	1198 aa		13.98	□□□□□ -0.17
SHANK2-219	ENST00000606715	KLHL34	Q8N239	644 aa		13.98	□□□□□ -0.17
SHANK2-219	ENST00000606715	IPO8	O15397	1037 aa	Known RBP	13.97	□□□□□ -0.17
SHANK2-219	ENST00000606715	KRI1	Q8N9T8	703 aa	Known RBP	13.97	□□□□□ -0.17
SHANK2-219	ENST00000606715	CFAP44	Q96MT7	982 aa		13.97	□□□□□ -0.17
SHANK2-219	ENST00000606715	ARHGAP5	Q13017	1502 aa		13.96	□□□□□ -0.17
SHANK2-219	ENST00000606715	FYCO1	Q9BQS8	1478 aa		13.96	□□□□□ -0.17
SHANK2-219	ENST00000606715	POGZ	Q7Z3K3	1410 aa		13.96	□□□□□ -0.17
SHANK2-219	ENST00000606715	KIAA1211	Q6ZU35	1233 aa		13.96	□□□□□ -0.18
SHANK2-219	ENST00000606715	APBB1	O00213	710 aa		13.95	□□□□□ -0.18
SHANK2-219	ENST00000606715	AMPH	P49418	695 aa		13.95	□□□□□ -0.18
SHANK2-219	ENST00000606715	DNAJC5B	Q9UF47	199 aa		13.95	□□□□□ -0.18
SHANK2-219	ENST00000606715	HDAC5	Q9UQL6	1122 aa		13.95	□□□□□ -0.18
SHANK2-219	ENST00000606715	KIF21B	O75037	1637 aa		13.95	□□□□□ -0.18
SHANK2-219	ENST00000606715	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	LTV1	Q96GA3	475 aa	Predicted RBP	13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	STK31	Q9BXU1	1019 aa		13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	LMOD3	Q0VAK6	560 aa		13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	FGD6	Q6ZV73	1430 aa		13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	PHLDB1	Q86UU1	1377 aa		13.94	□□□□□ -0.18
SHANK2-219	ENST00000606715	NUTM2F	A1L443	756 aa		13.93	□□□□□ -0.18
SHANK2-219	ENST00000606715	EVC2	Q86UK5	1308 aa		13.93	□□□□□ -0.18
SHANK2-219	ENST00000606715	KIF15	Q9NS87	1388 aa		13.92	□□□□□ -0.18
SHANK2-219	ENST00000606715	PPP4R2	Q9NY27	417 aa		13.92	□□□□□ -0.18
SHANK2-219	ENST00000606715	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.92	□□□□□ -0.18
SHANK2-219	ENST00000606715	KIAA0586	Q9BVV6	1533 aa		13.92	□□□□□ -0.18
SHANK2-219	ENST00000606715	KIAA2012	Q0VF49	1180 aa		13.92	□□□□□ -0.18
SHANK2-219	ENST00000606715	ABCA10	Q8WWZ4	1543 aa		13.91	□□□□□ -0.18
SHANK2-219	ENST00000606715	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.91	□□□□□ -0.18
SHANK2-219	ENST00000606715	CHAF1A	Q13111	956 aa	Predicted RBP	13.91	□□□□□ -0.18
SHANK2-219	ENST00000606715	SYNJ1	O43426	1573 aa		13.91	□□□□□ -0.18
SHANK2-219	ENST00000606715	VPS53	Q5VIR6	699 aa		13.91	□□□□□ -0.18
SHANK2-219	ENST00000606715	L1TD1	Q5T7N2	865 aa	Known RBP	13.9	□□□□□ -0.18
SHANK2-219	ENST00000606715	NLRP13	Q86W25	1043 aa		13.9	□□□□□ -0.18
SHANK2-219	ENST00000606715	TRAK1	Q9UPV9	953 aa		13.9	□□□□□ -0.18
SHANK2-219	ENST00000606715	LRRC9	Q6ZRR7	1453 aa		13.89	□□□□□ -0.19
SHANK2-219	ENST00000606715	PEG3	Q9GZU2	1588 aa		13.88	□□□□□ -0.19
SHANK2-219	ENST00000606715	GPATCH3	Q96I76	525 aa		13.88	□□□□□ -0.19
SHANK2-219	ENST00000606715	HECW1	Q76N89	1606 aa		13.88	□□□□□ -0.19
SHANK2-219	ENST00000606715	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.87	□□□□□ -0.19
SHANK2-219	ENST00000606715	CWC22	Q9HCG8	908 aa	Known RBP	13.87	□□□□□ -0.19
SHANK2-219	ENST00000606715	ANKRD50	Q9ULJ7	1429 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	TOMM22	Q9NS69	142 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	CUL7	Q14999	1698 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	MARCH6	O60337	910 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	NCOA2	Q15596	1464 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	TRIM34	Q9BYJ4	488 aa		13.86	□□□□□ -0.19
SHANK2-219	ENST00000606715	CGNL1	Q0VF96	1302 aa		13.85	□□□□□ -0.19
SHANK2-219	ENST00000606715	RASSF8	Q8NHQ8	419 aa		13.85	□□□□□ -0.19
SHANK2-219	ENST00000606715	PRX	Q9BXM0	1461 aa		13.85	□□□□□ -0.19
SHANK2-219	ENST00000606715	HSCB	Q8IWL3	235 aa		13.85	□□□□□ -0.19
SHANK2-219	ENST00000606715	COG3	Q96JB2	828 aa		13.84	□□□□□ -0.19
SHANK2-219	ENST00000606715	DHX57	Q6P158	1386 aa	Known RBP	13.84	□□□□□ -0.19
SHANK2-219	ENST00000606715	PDE3B	Q13370	1112 aa		13.84	□□□□□ -0.19
SHANK2-219	ENST00000606715	ERICH6B	Q5W0A0	696 aa		13.84	□□□□□ -0.19
SHANK2-219	ENST00000606715	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.84	□□□□□ -0.19
SHANK2-219	ENST00000606715	ATF3	P18847	181 aa		13.83	□□□□□ -0.19
SHANK2-219	ENST00000606715	EHBP1L1	Q8N3D4	1523 aa		13.83	□□□□□ -0.2
SHANK2-219	ENST00000606715	SYTL4	Q96C24	671 aa	Predicted RBP	13.83	□□□□□ -0.2
SHANK2-219	ENST00000606715	C1orf141	Q5JVX7	400 aa		13.83	□□□□□ -0.2
SHANK2-219	ENST00000606715	MIA2	Q96PC5	1412 aa		13.83	□□□□□ -0.2
SHANK2-219	ENST00000606715	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
SHANK2-219	ENST00000606715	DRC7	Q8IY82	874 aa		13.82	□□□□□ -0.2
SHANK2-219	ENST00000606715	ST20-MTHFS	A0A0A6YYL1	179 aa		13.82	□□□□□ -0.2
SHANK2-219	ENST00000606715	TRO	Q12816	1431 aa	Predicted RBP	13.82	□□□□□ -0.2
SHANK2-219	ENST00000606715	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.81	□□□□□ -0.2
SHANK2-219	ENST00000606715	IQGAP2	Q13576	1575 aa		13.81	□□□□□ -0.2
SHANK2-219	ENST00000606715	HSP90B1	P14625	803 aa	Known RBP	13.81	□□□□□ -0.2
SHANK2-219	ENST00000606715	NOL10	Q9BSC4	688 aa	Known RBP	13.81	□□□□□ -0.2
SHANK2-219	ENST00000606715	CCDC34	Q96HJ3	373 aa		13.81	□□□□□ -0.2
SHANK2-219	ENST00000606715	SLC4A10	Q6U841	1118 aa		13.8	□□□□□ -0.2
SHANK2-219	ENST00000606715	ITPRIP	Q8IWB1	547 aa		13.8	□□□□□ -0.2
SHANK2-219	ENST00000606715	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.8	□□□□□ -0.2
SHANK2-219	ENST00000606715	GRIN2A	Q12879	1464 aa		13.8	□□□□□ -0.2
SHANK2-219	ENST00000606715	NGEF	Q8N5V2	710 aa		13.8	□□□□□ -0.2
SHANK2-219	ENST00000606715	HTATSF1	O43719	755 aa	Known RBP	13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	NOC3L	Q8WTT2	800 aa	Known RBP	13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	FBXW7	Q969H0	707 aa		13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	TCEAL9	Q9UHQ7	104 aa		13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	PDE4C	Q08493	712 aa		13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	CNKSR2	Q8WXI2	1034 aa		13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	RAD21	O60216	631 aa		13.79	□□□□□ -0.2
SHANK2-219	ENST00000606715	SF3B2	Q13435	895 aa	Known RBP	13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	TTC5	Q8N0Z6	440 aa		13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	UNC13A	Q9UPW8	1703 aa		13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	USP47	Q96K76	1375 aa		13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	ZNF644	Q9H582	1327 aa	Predicted RBP	13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	RRBP1	Q9P2E9	1410 aa	Known RBP	13.78	□□□□□ -0.2
SHANK2-219	ENST00000606715	HMMR	O75330	724 aa		13.77	□□□□□ -0.2
SHANK2-219	ENST00000606715	RTN4	Q9NQC3	1192 aa	Known RBP	13.77	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms