RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CHIC2Q9UKJ5 165 aa23.36■■□□□ 1.33
LIG1-215ENST00000597901 TCOF1Q13428 1488 aaKnown RBP23.35■■□□□ 1.33
LIG1-215ENST00000597901 PTPN23Q9H3S7 1636 aa23.34■■□□□ 1.33
LIG1-215ENST00000597901 NCKAP5LQ9HCH0 1330 aa23.33■■□□□ 1.33
LIG1-215ENST00000597901 DAPK1P53355 1430 aa23.33■■□□□ 1.33
LIG1-215ENST00000597901 FAM50AQ14320 339 aaKnown RBP23.33■■□□□ 1.33
LIG1-215ENST00000597901 PTPRTO14522 1441 aa23.33■■□□□ 1.32
LIG1-215ENST00000597901 STRCQ7RTU9 1775 aa23.32■■□□□ 1.32
LIG1-215ENST00000597901 KIF15Q9NS87 1388 aa23.32■■□□□ 1.32
LIG1-215ENST00000597901 NCOA1Q15788 1441 aa23.32■■□□□ 1.32
LIG1-215ENST00000597901 TNRQ92752 1358 aa23.31■■□□□ 1.32
LIG1-215ENST00000597901 KDM5DQ9BY66 1539 aa23.31■■□□□ 1.32
LIG1-215ENST00000597901 DUOX2Q9NRD8 1548 aa23.29■■□□□ 1.32
LIG1-215ENST00000597901 FAM135AQ9P2D6 1515 aa23.29■■□□□ 1.32
LIG1-215ENST00000597901 PZPP20742 1482 aa23.29■■□□□ 1.32
LIG1-215ENST00000597901 SHANK2Q9UPX8 1470 aa23.29■■□□□ 1.32
LIG1-215ENST00000597901 PKD2Q13563 968 aa23.28■■□□□ 1.32
LIG1-215ENST00000597901 ANKRD30AQ9BXX3 1397 aa23.27■■□□□ 1.32
LIG1-215ENST00000597901 CAMSAP1Q5T5Y3 1602 aa23.27■■□□□ 1.32
LIG1-215ENST00000597901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.27■■□□□ 1.322e-7■■■■□ 23.8
LIG1-215ENST00000597901 PPARGC1BQ86YN6 1023 aaKnown RBP23.26■■□□□ 1.31
LIG1-215ENST00000597901 A2ML1A8K2U0 1454 aa23.24■■□□□ 1.31
LIG1-215ENST00000597901 THEMISQ8N1K5 641 aaPredicted RBP23.23■■□□□ 1.31
LIG1-215ENST00000597901 ERBINQ96RT1 1412 aa23.23■■□□□ 1.31
LIG1-215ENST00000597901 CEP170BQ9Y4F5 1589 aaPredicted RBP23.23■■□□□ 1.31
LIG1-215ENST00000597901 DNMT1P26358 1616 aaKnown RBP23.22■■□□□ 1.31
LIG1-215ENST00000597901 ABCC3O15438 1527 aa23.22■■□□□ 1.31
LIG1-215ENST00000597901 RNF17Q9BXT8 1623 aaKnown RBP23.22■■□□□ 1.31
LIG1-215ENST00000597901 PLA2R1Q13018 1463 aa23.21■■□□□ 1.31
LIG1-215ENST00000597901 MYO3AQ8NEV4 1616 aa23.21■■□□□ 1.31
LIG1-215ENST00000597901 EIF2AK4Q9P2K8 1649 aaKnown RBP23.21■■□□□ 1.31
LIG1-215ENST00000597901 ANKLE2Q86XL3 938 aa23.17■■□□□ 1.3
LIG1-215ENST00000597901 MROH1Q8NDA8 1641 aa23.17■■□□□ 1.3
LIG1-215ENST00000597901 KANK1Q14678 1352 aa23.16■■□□□ 1.3
LIG1-215ENST00000597901 NLRP1Q9C000 1473 aa23.16■■□□□ 1.3
LIG1-215ENST00000597901 CROCC2H7BZ55 1655 aa23.16■■□□□ 1.3
LIG1-215ENST00000597901 ZNF142P52746 1687 aaPredicted RBP23.16■■□□□ 1.3
LIG1-215ENST00000597901 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.15■■□□□ 1.3
LIG1-215ENST00000597901 ADGRL2O95490 1459 aa23.13■■□□□ 1.29
LIG1-215ENST00000597901 ZNF335Q9H4Z2 1342 aaPredicted RBP23.12■■□□□ 1.29
LIG1-215ENST00000597901 ARHGAP31Q2M1Z3 1444 aa23.12■■□□□ 1.29
LIG1-215ENST00000597901 ERVK-7P63135 1459 aa23.11■■□□□ 1.29
LIG1-215ENST00000597901 SPATA31D1Q6ZQQ2 1576 aa23.1■■□□□ 1.29
LIG1-215ENST00000597901 ZC3H13Q5T200 1668 aaKnown RBP23.09■■□□□ 1.29
LIG1-215ENST00000597901 ANKRD50Q9ULJ7 1429 aa23.09■■□□□ 1.29
LIG1-215ENST00000597901 LTBP4Q8N2S1 1624 aa23.09■■□□□ 1.29
LIG1-215ENST00000597901 ITGAEP38570 1179 aa23.09■■□□□ 1.29
LIG1-215ENST00000597901 UGGT1Q9NYU2 1555 aa23.09■■□□□ 1.29
LIG1-215ENST00000597901 PRDM15P57071 1507 aaPredicted RBP23.08■■□□□ 1.29
LIG1-215ENST00000597901 IQSEC2Q5JU85 1478 aa23.05■■□□□ 1.28
LIG1-215ENST00000597901 CEP152O94986 1710 aa23.04■■□□□ 1.28
LIG1-215ENST00000597901 ROCK1Q13464 1354 aa23.03■■□□□ 1.28
LIG1-215ENST00000597901 IDI1Q13907 227 aa23.03■■□□□ 1.28
LIG1-215ENST00000597901 DEPDC5O75140 1603 aa23.03■■□□□ 1.28
LIG1-215ENST00000597901 LMTK2Q8IWU2 1503 aa23.02■■□□□ 1.28
LIG1-215ENST00000597901 TXNDC2Q86VQ3 553 aa23.01■■□□□ 1.27
LIG1-215ENST00000597901 STAG3Q9UJ98 1225 aa23.01■■□□□ 1.27
LIG1-215ENST00000597901 VWDEQ8N2E2 1590 aa23.01■■□□□ 1.27
LIG1-215ENST00000597901 NPHP4O75161 1426 aaPredicted RBP22.99■■□□□ 1.27
LIG1-215ENST00000597901 LTKP29376 864 aa22.99■■□□□ 1.27
LIG1-215ENST00000597901 MED14O60244 1454 aa22.98■■□□□ 1.27
LIG1-215ENST00000597901 CFAP65Q6ZU64 1925 aaKnown RBP22.98■■□□□ 1.27
LIG1-215ENST00000597901 SLC52A1Q9NWF4 448 aa22.97■■□□□ 1.27
LIG1-215ENST00000597901 NEURL4Q96JN8 1562 aa22.97■■□□□ 1.27
LIG1-215ENST00000597901 EID1Q9Y6B2 187 aa22.96■■□□□ 1.27
LIG1-215ENST00000597901 NOS1P29475 1434 aa22.94■■□□□ 1.26
LIG1-215ENST00000597901 UBAP1LF5GYI3 381 aa22.93■■□□□ 1.26
LIG1-215ENST00000597901 TMEM2Q9UHN6 1383 aa22.91■■□□□ 1.26
LIG1-215ENST00000597901 NUP155O75694 1391 aa22.9■■□□□ 1.26
LIG1-215ENST00000597901 ARHGAP23Q9P227 1491 aa22.9■■□□□ 1.26
LIG1-215ENST00000597901 RRBP1Q9P2E9 1410 aaKnown RBP22.9■■□□□ 1.26
LIG1-215ENST00000597901 POLR1AO95602 1720 aaPredicted RBP22.88■■□□□ 1.25
LIG1-215ENST00000597901 UBR1Q8IWV7 1749 aa22.88■■□□□ 1.25
LIG1-215ENST00000597901 EFCAB6Q5THR3 1501 aa22.88■■□□□ 1.25
LIG1-215ENST00000597901 SCAF11Q99590 1463 aaKnown RBP22.88■■□□□ 1.25
LIG1-215ENST00000597901 SLIT1O75093 1534 aa22.87■■□□□ 1.25
LIG1-215ENST00000597901 RPRD2Q5VT52 1461 aaKnown RBP22.87■■□□□ 1.25
LIG1-215ENST00000597901 CPS1P31327 1500 aa22.85■■□□□ 1.25
LIG1-215ENST00000597901 PIK3C2BO00750 1634 aa22.85■■□□□ 1.25
LIG1-215ENST00000597901 SYNMO15061 1565 aa22.84■■□□□ 1.25
LIG1-215ENST00000597901 DISP3Q9P2K9 1392 aa22.84■■□□□ 1.25
LIG1-215ENST00000597901 TOM1O60784 492 aa22.82■■□□□ 1.24
LIG1-215ENST00000597901 IQGAP1P46940 1657 aa22.81■■□□□ 1.24
LIG1-215ENST00000597901 UNC13BO14795 1591 aa22.81■■□□□ 1.24
LIG1-215ENST00000597901 HDGFP51858 240 aaKnown RBP22.81■■□□□ 1.24
LIG1-215ENST00000597901 CHGAP10645 457 aaKnown RBP22.8■■□□□ 1.24
LIG1-215ENST00000597901 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
LIG1-215ENST00000597901 TET3O43151 1660 aa22.79■■□□□ 1.24
LIG1-215ENST00000597901 SLC26A8Q96RN1 970 aa22.79■■□□□ 1.24
LIG1-215ENST00000597901 BCANQ96GW7 911 aa22.78■■□□□ 1.24
LIG1-215ENST00000597901 PIP4K2BP78356 416 aa22.77■■□□□ 1.24
LIG1-215ENST00000597901 NAIPQ13075 1403 aa22.75■■□□□ 1.23
LIG1-215ENST00000597901 KDM5AP29375 1690 aaKnown RBP22.74■■□□□ 1.23
LIG1-215ENST00000597901 ADGRB3O60242 1522 aa22.74■■□□□ 1.23
LIG1-215ENST00000597901 KCNA6P17658 529 aa22.74■■□□□ 1.23
LIG1-215ENST00000597901 SENP3Q9H4L4 574 aaPredicted RBP22.74■■□□□ 1.23
LIG1-215ENST00000597901 LRRC7Q96NW7 1537 aa22.73■■□□□ 1.23
LIG1-215ENST00000597901 IQGAP3Q86VI3 1631 aa22.73■■□□□ 1.23
LIG1-215ENST00000597901 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.73■■□□□ 1.23
LIG1-215ENST00000597901 PPP1R15AO75807 674 aaPredicted RBP22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms