RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PLPPR3Q6T4P5 718 aa22.72■■□□□ 1.23
TRIM28-207ENST00000597136 RNF17Q9BXT8 1623 aaKnown RBP22.72■■□□□ 1.23
TRIM28-207ENST00000597136 C3P01024 1663 aa22.72■■□□□ 1.23
TRIM28-207ENST00000597136 MROH1Q8NDA8 1641 aa22.71■■□□□ 1.23
TRIM28-207ENST00000597136 CEP152O94986 1710 aa22.7■■□□□ 1.22
TRIM28-207ENST00000597136 ROCK1Q13464 1354 aa22.7■■□□□ 1.22
TRIM28-207ENST00000597136 ERBINQ96RT1 1412 aa22.69■■□□□ 1.22
TRIM28-207ENST00000597136 CEBPAP49715 358 aaPredicted RBP22.68■■□□□ 1.22
TRIM28-207ENST00000597136 MROH2AA6NES4 1674 aa22.68■■□□□ 1.22
TRIM28-207ENST00000597136 SETD1BQ9UPS6 1966 aaKnown RBP22.67■■□□□ 1.22
TRIM28-207ENST00000597136 DEPDC5O75140 1603 aa22.67■■□□□ 1.22
TRIM28-207ENST00000597136 ESF1Q9H501 851 aaKnown RBP22.66■■□□□ 1.22
TRIM28-207ENST00000597136 ANKRD50Q9ULJ7 1429 aa22.66■■□□□ 1.22
TRIM28-207ENST00000597136 GCC2Q8IWJ2 1684 aa22.65■■□□□ 1.22
TRIM28-207ENST00000597136 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.63■■□□□ 1.212e-10■□□□□ 10.7
TRIM28-207ENST00000597136 PPP6R1Q9UPN7 881 aa22.61■■□□□ 1.21
TRIM28-207ENST00000597136 WASHC2CQ9Y4E1 1318 aa22.61■■□□□ 1.21
TRIM28-207ENST00000597136 ZMYM3Q14202 1370 aa22.6■■□□□ 1.21
TRIM28-207ENST00000597136 CNTLNQ9NXG0 1405 aa22.6■■□□□ 1.21
TRIM28-207ENST00000597136 PRDM15P57071 1507 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-207ENST00000597136 KDM5DQ9BY66 1539 aa22.59■■□□□ 1.21
TRIM28-207ENST00000597136 NAIPQ13075 1403 aa22.59■■□□□ 1.21
TRIM28-207ENST00000597136 ZC3H13Q5T200 1668 aaKnown RBP22.58■■□□□ 1.21
TRIM28-207ENST00000597136 ABCC3O15438 1527 aa22.58■■□□□ 1.2
TRIM28-207ENST00000597136 PCGF6Q9BYE7 350 aa22.57■■□□□ 1.2
TRIM28-207ENST00000597136 CAMSAP1Q5T5Y3 1602 aa22.57■■□□□ 1.2
TRIM28-207ENST00000597136 UNC13BO14795 1591 aa22.56■■□□□ 1.2
TRIM28-207ENST00000597136 VWDEQ8N2E2 1590 aa22.55■■□□□ 1.2
TRIM28-207ENST00000597136 HFM1A2PYH4 1435 aa22.54■■□□□ 1.2
TRIM28-207ENST00000597136 FAM135AQ9P2D6 1515 aa22.54■■□□□ 1.2
TRIM28-207ENST00000597136 FBXO31Q5XUX0 539 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-207ENST00000597136 KANK1Q14678 1352 aa22.5■■□□□ 1.19
TRIM28-207ENST00000597136 PREX1Q8TCU6 1659 aa22.5■■□□□ 1.19
TRIM28-207ENST00000597136 IQGAP3Q86VI3 1631 aa22.48■■□□□ 1.19
TRIM28-207ENST00000597136 TET3O43151 1660 aa22.47■■□□□ 1.19
TRIM28-207ENST00000597136 PZPP20742 1482 aa22.46■■□□□ 1.19
TRIM28-207ENST00000597136 LMTK2Q8IWU2 1503 aa22.46■■□□□ 1.19
TRIM28-207ENST00000597136 NUP155O75694 1391 aa22.45■■□□□ 1.18
TRIM28-207ENST00000597136 E9PCH4 1651 aa22.45■■□□□ 1.18
TRIM28-207ENST00000597136 NPATQ14207 1427 aa22.42■■□□□ 1.18
TRIM28-207ENST00000597136 EFCAB6Q5THR3 1501 aa22.42■■□□□ 1.18
TRIM28-207ENST00000597136 MYO3AQ8NEV4 1616 aa22.42■■□□□ 1.18
TRIM28-207ENST00000597136 LMTK3Q96Q04 1460 aa22.41■■□□□ 1.18
TRIM28-207ENST00000597136 SETD5Q9C0A6 1442 aa22.41■■□□□ 1.18
TRIM28-207ENST00000597136 ARHGAP31Q2M1Z3 1444 aa22.4■■□□□ 1.18
TRIM28-207ENST00000597136 TRIM52Q96A61 297 aa22.4■■□□□ 1.18
TRIM28-207ENST00000597136 SPATA31D1Q6ZQQ2 1576 aa22.39■■□□□ 1.18
TRIM28-207ENST00000597136 ERVK-7P63135 1459 aa22.39■■□□□ 1.17
TRIM28-207ENST00000597136 TNRQ92752 1358 aa22.37■■□□□ 1.17
TRIM28-207ENST00000597136 HSPA2P54652 639 aa22.37■■□□□ 1.17
TRIM28-207ENST00000597136 UHRF1BP1Q6BDS2 1440 aa22.36■■□□□ 1.17
TRIM28-207ENST00000597136 ZNF142P52746 1687 aaPredicted RBP22.36■■□□□ 1.17
TRIM28-207ENST00000597136 RAB3GAP2Q9H2M9 1393 aa22.35■■□□□ 1.17
TRIM28-207ENST00000597136 SYNMO15061 1565 aa22.34■■□□□ 1.17
TRIM28-207ENST00000597136 MYO5BQ9ULV0 1848 aa22.34■■□□□ 1.17
TRIM28-207ENST00000597136 CEP170BQ9Y4F5 1589 aaPredicted RBP22.32■■□□□ 1.16
TRIM28-207ENST00000597136 SPHKAPQ2M3C7 1700 aa22.31■■□□□ 1.16
TRIM28-207ENST00000597136 STRCQ7RTU9 1775 aa22.3■■□□□ 1.16
TRIM28-207ENST00000597136 NOS1P29475 1434 aa22.29■■□□□ 1.16
TRIM28-207ENST00000597136 RPRD2Q5VT52 1461 aaKnown RBP22.29■■□□□ 1.16
TRIM28-207ENST00000597136 PIK3C2BO00750 1634 aa22.29■■□□□ 1.16
TRIM28-207ENST00000597136 UBR1Q8IWV7 1749 aa22.28■■□□□ 1.16
TRIM28-207ENST00000597136 SLC4A1APQ9BWU0 796 aaKnown RBP22.28■■□□□ 1.16
TRIM28-207ENST00000597136 A2ML1A8K2U0 1454 aa22.27■■□□□ 1.16
TRIM28-207ENST00000597136 PKD2Q13563 968 aa22.26■■□□□ 1.15
TRIM28-207ENST00000597136 UGGT1Q9NYU2 1555 aa22.26■■□□□ 1.15
TRIM28-207ENST00000597136 IDI1Q13907 227 aa22.25■■□□□ 1.15
TRIM28-207ENST00000597136 NLRP1Q9C000 1473 aa22.25■■□□□ 1.15
TRIM28-207ENST00000597136 FOXD1Q16676 465 aa22.25■■□□□ 1.15
TRIM28-207ENST00000597136 MPHOSPH9Q99550 1183 aa22.25■■□□□ 1.15
TRIM28-207ENST00000597136 HRCP23327 699 aa22.21■■□□□ 1.15
TRIM28-207ENST00000597136 PLA2R1Q13018 1463 aa22.19■■□□□ 1.14
TRIM28-207ENST00000597136 KIF1BO60333 1816 aa22.19■■□□□ 1.14
TRIM28-207ENST00000597136 PTPRTO14522 1441 aa22.19■■□□□ 1.14
TRIM28-207ENST00000597136 POLR1AO95602 1720 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-207ENST00000597136 KDM5AP29375 1690 aaKnown RBP22.18■■□□□ 1.14
TRIM28-207ENST00000597136 CLTCL1P53675 1640 aa22.17■■□□□ 1.14
TRIM28-207ENST00000597136 SLC52A1Q9NWF4 448 aa22.17■■□□□ 1.14
TRIM28-207ENST00000597136 TMEM131LA2VDJ0 1609 aa22.17■■□□□ 1.14
TRIM28-207ENST00000597136 THEMISQ8N1K5 641 aaPredicted RBP22.16■■□□□ 1.14
TRIM28-207ENST00000597136 NCKAP5LQ9HCH0 1330 aa22.15■■□□□ 1.14
TRIM28-207ENST00000597136 ACIN1Q9UKV3 1341 aaKnown RBP22.15■■□□□ 1.14
TRIM28-207ENST00000597136 TRPM2O94759 1503 aa22.14■■□□□ 1.13
TRIM28-207ENST00000597136 STAG3Q9UJ98 1225 aa22.13■■□□□ 1.13
TRIM28-207ENST00000597136 ADGRB3O60242 1522 aa22.13■■□□□ 1.13
TRIM28-207ENST00000597136 CHGAP10645 457 aaKnown RBP22.12■■□□□ 1.13
TRIM28-207ENST00000597136 NEURL4Q96JN8 1562 aa22.08■■□□□ 1.13
TRIM28-207ENST00000597136 SLIT1O75093 1534 aa22.07■■□□□ 1.12
TRIM28-207ENST00000597136 LTKP29376 864 aa22.07■■□□□ 1.12
TRIM28-207ENST00000597136 ARHGAP23Q9P227 1491 aa22.06■■□□□ 1.12
TRIM28-207ENST00000597136 ANKLE2Q86XL3 938 aa22.06■■□□□ 1.12
TRIM28-207ENST00000597136 TMEM2Q9UHN6 1383 aa22.05■■□□□ 1.12
TRIM28-207ENST00000597136 TXNDC2Q86VQ3 553 aa22.04■■□□□ 1.12
TRIM28-207ENST00000597136 IQGAP1P46940 1657 aa22.02■■□□□ 1.12
TRIM28-207ENST00000597136 NUTM2DQ5VT03 806 aaPredicted RBP22.01■■□□□ 1.11
TRIM28-207ENST00000597136 ANKRD30BQ9BXX2 1392 aa22.01■■□□□ 1.11
TRIM28-207ENST00000597136 SENP3Q9H4L4 574 aaPredicted RBP22■■□□□ 1.11
TRIM28-207ENST00000597136 SCAF11Q99590 1463 aaKnown RBP21.99■■□□□ 1.11
TRIM28-207ENST00000597136 CCDC144AA2RUR9 1427 aa21.99■■□□□ 1.11
TRIM28-207ENST00000597136 ZFYVE9O95405 1425 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms