RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 CADPS2Q86UW7 1296 aa8.2□□□□□ -1.1
SMAD4-212ENST00000591126 FAM135AQ9P2D6 1515 aa8.2□□□□□ -1.1
SMAD4-212ENST00000591126 ANKRD30BQ9BXX2 1392 aa8.19□□□□□ -1.1
SMAD4-212ENST00000591126 ABCC2Q92887 1545 aa8.19□□□□□ -1.1
SMAD4-212ENST00000591126 NUP160Q12769 1436 aa8.19□□□□□ -1.1
SMAD4-212ENST00000591126 CCDC141Q6ZP82 1450 aa8.19□□□□□ -1.1
SMAD4-212ENST00000591126 AFAP1Q8N556 730 aa8.19□□□□□ -1.1
SMAD4-212ENST00000591126 ZNF692Q9BU19 519 aaPredicted RBP8.19□□□□□ -1.1
SMAD4-212ENST00000591126 ZNF518AQ6AHZ1 1483 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 C1orf141Q5JVX7 400 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 G3V3G9 751 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 DCAF8Q5TAQ9 597 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 CFAP44Q96MT7 982 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 CGNL1Q0VF96 1302 aa8.18□□□□□ -1.1
SMAD4-212ENST00000591126 SENP3Q9H4L4 574 aaPredicted RBP8.18□□□□□ -1.1
SMAD4-212ENST00000591126 RAPGEF3O95398 923 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 NEO1Q92859 1461 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 C9orf84Q5VXU9 1444 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 FGD6Q6ZV73 1430 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 CFAP74Q9C0B2 1584 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 UHRF1BP1Q6BDS2 1440 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 MSH6P52701 1360 aa8.17□□□□□ -1.1
SMAD4-212ENST00000591126 EIF4G3O43432 1585 aaKnown RBP8.16□□□□□ -1.1
SMAD4-212ENST00000591126 ADAMTS12P58397 1594 aa8.16□□□□□ -1.1
SMAD4-212ENST00000591126 DIEXFQ68CQ4 756 aaKnown RBP8.16□□□□□ -1.1
SMAD4-212ENST00000591126 NLRP13Q86W25 1043 aa8.16□□□□□ -1.1
SMAD4-212ENST00000591126 SMG6Q86US8 1419 aaKnown RBP8.16□□□□□ -1.1
SMAD4-212ENST00000591126 TNRQ92752 1358 aa8.16□□□□□ -1.1
SMAD4-212ENST00000591126 UPF2Q9HAU5 1272 aaKnown RBP8.15□□□□□ -1.1
SMAD4-212ENST00000591126 ABCC10Q5T3U5 1492 aa8.15□□□□□ -1.1
SMAD4-212ENST00000591126 THOC2Q8NI27 1593 aaKnown RBP8.15□□□□□ -1.1
SMAD4-212ENST00000591126 PLCH2O75038 1416 aa8.15□□□□□ -1.1
SMAD4-212ENST00000591126 GTF2E1P29083 439 aaPredicted RBP8.15□□□□□ -1.1
SMAD4-212ENST00000591126 NGLY1Q96IV0 654 aa8.15□□□□□ -1.1
SMAD4-212ENST00000591126 UGGT2Q9NYU1 1516 aa8.15□□□□□ -1.1
SMAD4-212ENST00000591126 RAPGEF4Q8WZA2 1011 aa8.15□□□□□ -1.11
SMAD4-212ENST00000591126 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.14□□□□□ -1.11
SMAD4-212ENST00000591126 UBAP1LF5GYI3 381 aa8.14□□□□□ -1.11
SMAD4-212ENST00000591126 SAFB2Q14151 953 aaKnown RBP eCLIP8.14□□□□□ -1.11
SMAD4-212ENST00000591126 U2SURPO15042 1029 aaKnown RBP8.14□□□□□ -1.11
SMAD4-212ENST00000591126 LRRC9Q6ZRR7 1453 aa8.14□□□□□ -1.11
SMAD4-212ENST00000591126 KIF21AQ7Z4S6 1674 aa8.14□□□□□ -1.11
SMAD4-212ENST00000591126 KIAA1107Q9UPP5 1409 aa8.14□□□□□ -1.11
SMAD4-212ENST00000591126 PRKCSHP14314 528 aaPredicted RBP8.13□□□□□ -1.11
SMAD4-212ENST00000591126 NGEFQ8N5V2 710 aa8.13□□□□□ -1.11
SMAD4-212ENST00000591126 HSP90AB1P08238 724 aaKnown RBP8.13□□□□□ -1.11
SMAD4-212ENST00000591126 DHX29Q7Z478 1369 aaKnown RBP8.13□□□□□ -1.11
SMAD4-212ENST00000591126 YTHDC1Q96MU7 727 aaKnown RBP8.13□□□□□ -1.11
SMAD4-212ENST00000591126 RALBP1Q15311 655 aa8.13□□□□□ -1.11
SMAD4-212ENST00000591126 TTC5Q8N0Z6 440 aa8.13□□□□□ -1.11
SMAD4-212ENST00000591126 SUPT6HQ7KZ85 1726 aaKnown RBP8.13□□□□□ -1.11
SMAD4-212ENST00000591126 PIP4K2BP78356 416 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 PDE3BQ13370 1112 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 KCNH5Q8NCM2 988 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 KTN1Q86UP2 1357 aaKnown RBP8.12□□□□□ -1.11
SMAD4-212ENST00000591126 CASC1Q6TDU7 716 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 UHRF1BP1LA0JNW5 1464 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 MSH5O43196 834 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 MRS2Q9HD23 443 aa8.12□□□□□ -1.11
SMAD4-212ENST00000591126 CENPJQ9HC77 1338 aaPredicted RBP8.12□□□□□ -1.11
SMAD4-212ENST00000591126 ESCO1Q5FWF5 840 aa8.11□□□□□ -1.11
SMAD4-212ENST00000591126 MAGI2Q86UL8 1455 aa8.11□□□□□ -1.11
SMAD4-212ENST00000591126 STK31Q9BXU1 1019 aa8.11□□□□□ -1.11
SMAD4-212ENST00000591126 IPO8O15397 1037 aaKnown RBP8.11□□□□□ -1.11
SMAD4-212ENST00000591126 KANK4Q5T7N3 995 aaPredicted RBP8.11□□□□□ -1.11
SMAD4-212ENST00000591126 MAP3K1Q13233 1512 aa8.11□□□□□ -1.11
SMAD4-212ENST00000591126 ATP10AO60312 1499 aa8.1□□□□□ -1.11
SMAD4-212ENST00000591126 TRAK1Q9UPV9 953 aa8.1□□□□□ -1.11
SMAD4-212ENST00000591126 RTEL1-TNFRSF6BF6WH68 1400 aa8.09□□□□□ -1.11
SMAD4-212ENST00000591126 TEFQ10587 303 aa8.08□□□□□ -1.12
SMAD4-212ENST00000591126 SOX12O15370 315 aa8.08□□□□□ -1.12
SMAD4-212ENST00000591126 RAPGEF6Q8TEU7 1601 aa8.08□□□□□ -1.12
SMAD4-212ENST00000591126 NBPF8Q3BBV2 869 aa8.07□□□□□ -1.12
SMAD4-212ENST00000591126 NBPF14Q5TI25 921 aa8.07□□□□□ -1.12
SMAD4-212ENST00000591126 ATAD2Q6PL18 1390 aa8.07□□□□□ -1.12
SMAD4-212ENST00000591126 LMTK3Q96Q04 1460 aa8.07□□□□□ -1.12
SMAD4-212ENST00000591126 RAB3GAP2Q9H2M9 1393 aa8.07□□□□□ -1.12
SMAD4-212ENST00000591126 TATP17735 454 aaPredicted RBP8.07□□□□□ -1.12
SMAD4-212ENST00000591126 OS9Q13438 667 aaPredicted RBP8.07□□□□□ -1.12
SMAD4-212ENST00000591126 FTSJ3Q8IY81 847 aaKnown RBP8.07□□□□□ -1.12
SMAD4-212ENST00000591126 A2MP01023 1474 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 PRDM11Q9NQV5 511 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 PLEKHO1Q53GL0 409 aaPredicted RBP8.06□□□□□ -1.12
SMAD4-212ENST00000591126 SPG7Q9UQ90 795 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 RPRD2Q5VT52 1461 aaKnown RBP8.06□□□□□ -1.12
SMAD4-212ENST00000591126 ARHGEF11O15085 1522 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 CEP170Q5SW79 1584 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 TAF7LQ5H9L4 462 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 SMC4Q9NTJ3 1288 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 NPHP3Q7Z494 1330 aa8.06□□□□□ -1.12
SMAD4-212ENST00000591126 DDX58O95786 925 aaKnown RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 LRRFIP1Q32MZ4 808 aaKnown RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 RUSC2Q8N2Y8 1516 aa8.05□□□□□ -1.12
SMAD4-212ENST00000591126 NUTM2BA6NNL0 878 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 NUTM2EB1AL46 878 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 NUTM2AQ8IVF1 878 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 LRRC59Q96AG4 307 aaKnown RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 MINK1Q8N4C8 1332 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-212ENST00000591126 ERBINQ96RT1 1412 aa8.05□□□□□ -1.12
SMAD4-212ENST00000591126 NLRP6P59044 892 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms