RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 SHANK2Q9UPX8 1470 aa30.23■■■□□ 2.43
TPM4-208ENST00000588410 SETD1BQ9UPS6 1966 aaKnown RBP30.23■■■□□ 2.43
TPM4-208ENST00000588410 KIF15Q9NS87 1388 aa30.21■■■□□ 2.43
TPM4-208ENST00000588410 KDM5DQ9BY66 1539 aa30.21■■■□□ 2.43
TPM4-208ENST00000588410 FAM135AQ9P2D6 1515 aa30.2■■■□□ 2.42
TPM4-208ENST00000588410 CHIC2Q9UKJ5 165 aa30.19■■■□□ 2.42
TPM4-208ENST00000588410 DUOX2Q9NRD8 1548 aa30.18■■■□□ 2.42
TPM4-208ENST00000588410 ANKRD30AQ9BXX3 1397 aa30.15■■■□□ 2.42
TPM4-208ENST00000588410 DNMT1P26358 1616 aaKnown RBP30.14■■■□□ 2.42
TPM4-208ENST00000588410 FBXO31Q5XUX0 539 aaPredicted RBP30.14■■■□□ 2.42
TPM4-208ENST00000588410 PZPP20742 1482 aa30.12■■■□□ 2.41
TPM4-208ENST00000588410 TNRQ92752 1358 aa30.11■■■□□ 2.41
TPM4-208ENST00000588410 ERBINQ96RT1 1412 aa30.11■■■□□ 2.41
TPM4-208ENST00000588410 EIF2AK4Q9P2K8 1649 aaKnown RBP30.11■■■□□ 2.41
TPM4-208ENST00000588410 CROCC2H7BZ55 1655 aa30.09■■■□□ 2.41
TPM4-208ENST00000588410 PPARGC1BQ86YN6 1023 aaKnown RBP30.09■■■□□ 2.41
TPM4-208ENST00000588410 RNF17Q9BXT8 1623 aaKnown RBP30.09■■■□□ 2.41
TPM4-208ENST00000588410 NCOA1Q15788 1441 aa30.08■■■□□ 2.41
TPM4-208ENST00000588410 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.06■■■□□ 2.43e-6■■□□□ 13.8
TPM4-208ENST00000588410 MYO3AQ8NEV4 1616 aa30.05■■■□□ 2.4
TPM4-208ENST00000588410 ABCC3O15438 1527 aa30.05■■■□□ 2.4
TPM4-208ENST00000588410 CAMSAP1Q5T5Y3 1602 aa30.04■■■□□ 2.4
TPM4-208ENST00000588410 CEP170BQ9Y4F5 1589 aaPredicted RBP30.04■■■□□ 2.4
TPM4-208ENST00000588410 PTPRTO14522 1441 aa30.04■■■□□ 2.4
TPM4-208ENST00000588410 A2ML1A8K2U0 1454 aa30.03■■■□□ 2.4
TPM4-208ENST00000588410 FBXO41Q8TF61 875 aa30.02■■■□□ 2.4
TPM4-208ENST00000588410 NCKAP5LQ9HCH0 1330 aa30.01■■■□□ 2.4
TPM4-208ENST00000588410 STRCQ7RTU9 1775 aa30.01■■■□□ 2.39
TPM4-208ENST00000588410 KANK1Q14678 1352 aa30.01■■■□□ 2.39
TPM4-208ENST00000588410 PKD2Q13563 968 aa30■■■□□ 2.39
TPM4-208ENST00000588410 ADGRL2O95490 1459 aa29.99■■■□□ 2.39
TPM4-208ENST00000588410 MROH1Q8NDA8 1641 aa29.98■■■□□ 2.39
TPM4-208ENST00000588410 CERKQ8TCT0 537 aa29.98■■■□□ 2.39
TPM4-208ENST00000588410 ZC3H13Q5T200 1668 aaKnown RBP29.98■■■□□ 2.39
TPM4-208ENST00000588410 PLA2R1Q13018 1463 aa29.97■■■□□ 2.39
TPM4-208ENST00000588410 ZNF142P52746 1687 aaPredicted RBP29.97■■■□□ 2.39
TPM4-208ENST00000588410 NLRP1Q9C000 1473 aa29.94■■■□□ 2.38
TPM4-208ENST00000588410 PRDM15P57071 1507 aaPredicted RBP29.94■■■□□ 2.38
TPM4-208ENST00000588410 THEMISQ8N1K5 641 aaPredicted RBP29.93■■■□□ 2.38
TPM4-208ENST00000588410 ITGAEP38570 1179 aa29.91■■■□□ 2.38
TPM4-208ENST00000588410 ERVK-7P63135 1459 aa29.91■■■□□ 2.38
TPM4-208ENST00000588410 ANKRD50Q9ULJ7 1429 aa29.9■■■□□ 2.38
TPM4-208ENST00000588410 ARHGAP31Q2M1Z3 1444 aa29.88■■■□□ 2.37
TPM4-208ENST00000588410 SPATA31D1Q6ZQQ2 1576 aa29.88■■■□□ 2.37
TPM4-208ENST00000588410 ANKLE2Q86XL3 938 aa29.86■■■□□ 2.37
TPM4-208ENST00000588410 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.86■■■□□ 2.378e-48■■■■□ 23.3
TPM4-208ENST00000588410 ROCK1Q13464 1354 aa29.85■■■□□ 2.37
TPM4-208ENST00000588410 UGGT1Q9NYU2 1555 aa29.85■■■□□ 2.37
TPM4-208ENST00000588410 CEP152O94986 1710 aa29.85■■■□□ 2.37
TPM4-208ENST00000588410 DEPDC5O75140 1603 aa29.84■■■□□ 2.37
TPM4-208ENST00000588410 LMTK2Q8IWU2 1503 aa29.8■■■□□ 2.36
TPM4-208ENST00000588410 VWDEQ8N2E2 1590 aa29.77■■■□□ 2.36
TPM4-208ENST00000588410 ZNF335Q9H4Z2 1342 aaPredicted RBP29.76■■■□□ 2.36
TPM4-208ENST00000588410 STAG3Q9UJ98 1225 aa29.74■■■□□ 2.35
TPM4-208ENST00000588410 RRBP1Q9P2E9 1410 aaKnown RBP29.71■■■□□ 2.35
TPM4-208ENST00000588410 LTBP4Q8N2S1 1624 aa29.71■■■□□ 2.35
TPM4-208ENST00000588410 EFCAB6Q5THR3 1501 aa29.69■■■□□ 2.34
TPM4-208ENST00000588410 NPHP4O75161 1426 aaPredicted RBP29.69■■■□□ 2.34
TPM4-208ENST00000588410 NEURL4Q96JN8 1562 aa29.66■■■□□ 2.34
TPM4-208ENST00000588410 IDI1Q13907 227 aa29.66■■■□□ 2.34
TPM4-208ENST00000588410 NOS1P29475 1434 aa29.64■■■□□ 2.34
TPM4-208ENST00000588410 MED14O60244 1454 aa29.64■■■□□ 2.34
TPM4-208ENST00000588410 TXNDC2Q86VQ3 553 aa29.64■■■□□ 2.34
TPM4-208ENST00000588410 SLC52A1Q9NWF4 448 aa29.64■■■□□ 2.34
TPM4-208ENST00000588410 EID1Q9Y6B2 187 aa29.64■■■□□ 2.34
TPM4-208ENST00000588410 NUP155O75694 1391 aa29.64■■■□□ 2.33
TPM4-208ENST00000588410 RPRD2Q5VT52 1461 aaKnown RBP29.63■■■□□ 2.33
TPM4-208ENST00000588410 POLR1AO95602 1720 aaPredicted RBP29.62■■■□□ 2.33
TPM4-208ENST00000588410 IQSEC2Q5JU85 1478 aa29.61■■■□□ 2.33
TPM4-208ENST00000588410 CFAP65Q6ZU64 1925 aaKnown RBP29.61■■■□□ 2.33
TPM4-208ENST00000588410 UNC13BO14795 1591 aa29.6■■■□□ 2.33
TPM4-208ENST00000588410 SCAF11Q99590 1463 aaKnown RBP29.59■■■□□ 2.33
TPM4-208ENST00000588410 UBR1Q8IWV7 1749 aa29.59■■■□□ 2.33
TPM4-208ENST00000588410 LTKP29376 864 aa29.58■■■□□ 2.33
TPM4-208ENST00000588410 TMEM2Q9UHN6 1383 aa29.58■■■□□ 2.33
TPM4-208ENST00000588410 SYNMO15061 1565 aa29.56■■■□□ 2.32
TPM4-208ENST00000588410 SLIT1O75093 1534 aa29.56■■■□□ 2.32
TPM4-208ENST00000588410 ARHGAP23Q9P227 1491 aa29.56■■■□□ 2.32
TPM4-208ENST00000588410 TET3O43151 1660 aa29.56■■■□□ 2.32
TPM4-208ENST00000588410 PIK3C2BO00750 1634 aa29.56■■■□□ 2.32
TPM4-208ENST00000588410 CPS1P31327 1500 aa29.5■■■□□ 2.31
TPM4-208ENST00000588410 IQGAP1P46940 1657 aa29.5■■■□□ 2.31
TPM4-208ENST00000588410 UBAP1LF5GYI3 381 aa29.5■■■□□ 2.31
TPM4-208ENST00000588410 IQGAP3Q86VI3 1631 aa29.49■■■□□ 2.31
TPM4-208ENST00000588410 NAIPQ13075 1403 aa29.48■■■□□ 2.31
TPM4-208ENST00000588410 CHGAP10645 457 aaKnown RBP29.48■■■□□ 2.31
TPM4-208ENST00000588410 ADGRB3O60242 1522 aa29.48■■■□□ 2.31
TPM4-208ENST00000588410 GCC2Q8IWJ2 1684 aa29.46■■■□□ 2.31
TPM4-208ENST00000588410 HDGFP51858 240 aaKnown RBP29.45■■■□□ 2.31
TPM4-208ENST00000588410 KDM5AP29375 1690 aaKnown RBP29.44■■■□□ 2.3
TPM4-208ENST00000588410 BCANQ96GW7 911 aa29.43■■■□□ 2.3
TPM4-208ENST00000588410 TRIM52Q96A61 297 aa29.42■■■□□ 2.3
TPM4-208ENST00000588410 HFM1A2PYH4 1435 aa29.42■■■□□ 2.3
TPM4-208ENST00000588410 PPP1R15AO75807 674 aaPredicted RBP29.41■■■□□ 2.3
TPM4-208ENST00000588410 E9PCH4 1651 aa29.4■■■□□ 2.3
TPM4-208ENST00000588410 TOM1O60784 492 aa29.37■■■□□ 2.29
TPM4-208ENST00000588410 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.36■■■□□ 2.29
TPM4-208ENST00000588410 SLC26A8Q96RN1 970 aa29.36■■■□□ 2.29
TPM4-208ENST00000588410 RIMS2Q9UQ26 1411 aa29.36■■■□□ 2.29
TPM4-208ENST00000588410 SENP3Q9H4L4 574 aaPredicted RBP29.33■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms