RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 SF3B1O75533 1304 aaKnown RBP eCLIP21.44■■□□□ 1.026e-8■■■■■ 90.6
TPM4-208ENST00000588410 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.12■□□□□ 0.491e-6■■■■■ 56.2
TPM4-208ENST00000588410 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.29■□□□□ 0.847e-12■■■■■ 49
TPM4-208ENST00000588410 DDX3XO00571 662 aaKnown RBP eCLIP19.95■□□□□ 0.783e-6■■■■■ 42.7
TPM4-208ENST00000588410 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.12■■□□□ 1.132e-6■■■■■ 40.6
TPM4-208ENST00000588410 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.81■□□□□ 0.922e-6■■■■■ 36.9
TPM4-208ENST00000588410 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.19■■□□□ 1.32e-6■■■■■ 36.1
TPM4-208ENST00000588410 NONOQ15233 471 aaKnown RBP eCLIP22.14■■□□□ 1.133e-8■■■■■ 34.8
TPM4-208ENST00000588410 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.24■■□□□ 1.313e-6■■■■■ 28.2
TPM4-208ENST00000588410 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.22■□□□□ 0.996e-15■■■■■ 27.2
TPM4-208ENST00000588410 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.24■□□□□ 0.837e-11■■■■■ 26.8
TPM4-208ENST00000588410 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.86■■■□□ 2.378e-48■■■■□ 23.3
TPM4-208ENST00000588410 AQRO60306 1485 aaKnown RBP eCLIP34.6■■■■□ 3.131e-6■■■■□ 22
TPM4-208ENST00000588410 GTF2F1P35269 517 aaKnown RBP eCLIP21.68■■□□□ 1.061e-6■■■■□ 21.5
TPM4-208ENST00000588410 RBM5P52756 815 aaKnown RBP eCLIP24.36■■□□□ 1.498e-6■■■■□ 20.7
TPM4-208ENST00000588410 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.2■□□□□ 0.54e-6■■■□□ 19.1
TPM4-208ENST00000588410 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.28■□□□□ 0.842e-6■■■□□ 18.9
TPM4-208ENST00000588410 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.41■□□□□ 0.544e-9■■■□□ 18
TPM4-208ENST00000588410 NKRFO15226 690 aaKnown RBP eCLIP22.67■■□□□ 1.223e-8■■■□□ 18
TPM4-208ENST00000588410 EFTUD2Q15029 972 aaKnown RBP eCLIP18.45■□□□□ 0.541e-7■■■□□ 17.1
TPM4-208ENST00000588410 EWSR1Q01844 656 aaKnown RBP eCLIP14.32□□□□□ -0.121e-6■■■□□ 16.2
TPM4-208ENST00000588410 EIF4G2P78344 907 aaKnown RBP eCLIP27.2■■□□□ 1.943e-9■■■□□ 15.5
TPM4-208ENST00000588410 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.9■□□□□ 0.782e-11■■■□□ 15.3
TPM4-208ENST00000588410 ZNF622Q969S3 477 aaKnown RBP eCLIP25.52■■□□□ 1.684e-10■■■□□ 14.6
TPM4-208ENST00000588410 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.45■□□□□ 0.222e-6■■□□□ 14.1
TPM4-208ENST00000588410 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.48■■□□□ 1.192e-12■■□□□ 13.8
TPM4-208ENST00000588410 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.06■■■□□ 2.43e-6■■□□□ 13.8
TPM4-208ENST00000588410 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.57■■■□□ 2.642e-6■■□□□ 13.7
TPM4-208ENST00000588410 PUM1Q14671 1186 aaKnown RBP eCLIP20.37■□□□□ 0.852e-10■■□□□ 13.3
TPM4-208ENST00000588410 PRPF4O43172 522 aaKnown RBP eCLIP18.65■□□□□ 0.582e-10■■□□□ 13.2
TPM4-208ENST00000588410 TIA1P31483 386 aaKnown RBP eCLIP18.01■□□□□ 0.471e-15■■□□□ 12.8
TPM4-208ENST00000588410 DDX21Q9NR30 783 aaKnown RBP eCLIP25.41■■□□□ 1.664e-7■■□□□ 12.4
TPM4-208ENST00000588410 SF3B4Q15427 424 aaKnown RBP eCLIP17.85■□□□□ 0.454e-8■■□□□ 12.4
TPM4-208ENST00000588410 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.6■■□□□ 1.852e-9■■□□□ 11.7
TPM4-208ENST00000588410 WDR43Q15061 677 aaKnown RBP eCLIP25.82■■□□□ 1.721e-6■□□□□ 11.1
TPM4-208ENST00000588410 DDX6P26196 483 aaKnown RBP eCLIP20.89■□□□□ 0.931e-6■□□□□ 10.8
TPM4-208ENST00000588410 FXR2P51116 673 aaKnown RBP eCLIP21.74■■□□□ 1.072e-7■□□□□ 10.7
TPM4-208ENST00000588410 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.18■□□□□ 0.186e-14■□□□□ 10.6
TPM4-208ENST00000588410 LSM11P83369 360 aaKnown RBP eCLIP16.9■□□□□ 0.32e-6■□□□□ 9.8
TPM4-208ENST00000588410 U2AF2P26368 475 aaKnown RBP eCLIP21.79■■□□□ 1.083e-8■□□□□ 9.8
TPM4-208ENST00000588410 DDX42Q86XP3 938 aaKnown RBP eCLIP20.69■□□□□ 0.99e-6■□□□□ 9.6
TPM4-208ENST00000588410 G3BP1Q13283 466 aaKnown RBP eCLIP24.22■■□□□ 1.476e-7■□□□□ 9.5
TPM4-208ENST00000588410 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.13■■□□□ 1.136e-8■□□□□ 9.1
TPM4-208ENST00000588410 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.98■■□□□ 1.273e-7■□□□□ 8.7
TPM4-208ENST00000588410 SRSF1Q07955 248 aaKnown RBP eCLIP18.39■□□□□ 0.532e-6■□□□□ 8.5
Retrieved 45 of 45 RNA–protein pairs in 10.9 ms