RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 NISCHQ9Y2I1 1504 aa47.86■■■■■ 5.25
TPM4-208ENST00000588410 CCDC180Q9P1Z9 1646 aa42.6■■■■■ 4.41
TPM4-208ENST00000588410 ABCC9O60706 1549 aa42.24■■■■■ 4.35
TPM4-208ENST00000588410 RB1CC1Q8TDY2 1594 aa40.4■■■■■ 4.06
TPM4-208ENST00000588410 DCAF8L2P0C7V8 631 aa40.37■■■■■ 4.05
TPM4-208ENST00000588410 NACADO15069 1562 aa40.25■■■■■ 4.03
TPM4-208ENST00000588410 MYO15BQ96JP2 1530 aa39.86■■■■□ 3.97
TPM4-208ENST00000588410 ZCCHC6Q5VYS8 1495 aaKnown RBP39.77■■■■□ 3.96
TPM4-208ENST00000588410 DCAF1Q9Y4B6 1507 aa39.55■■■■□ 3.92
TPM4-208ENST00000588410 PABPN1Q86U42 306 aaKnown RBP eCLIP39.48■■■■□ 3.91
TPM4-208ENST00000588410 UNC13AQ9UPW8 1703 aa39.23■■■■□ 3.87
TPM4-208ENST00000588410 DNAJC5BQ9UF47 199 aa39.12■■■■□ 3.85
TPM4-208ENST00000588410 BICRAQ9NZM4 1560 aa39.1■■■■□ 3.85
TPM4-208ENST00000588410 SCRIBQ14160 1630 aa38.93■■■■□ 3.82
TPM4-208ENST00000588410 SHROOM4Q9ULL8 1493 aa38.74■■■■□ 3.79
TPM4-208ENST00000588410 EIF4G1Q04637 1599 aaKnown RBP38.16■■■■□ 3.7
TPM4-208ENST00000588410 CC2D2AQ9P2K1 1620 aa38.09■■■■□ 3.69
TPM4-208ENST00000588410 CECR2Q9BXF3 1484 aa38■■■■□ 3.67
TPM4-208ENST00000588410 NCAPD3P42695 1498 aa37.19■■■■□ 3.54
TPM4-208ENST00000588410 SMARCA4P51532 1647 aa37.17■■■■□ 3.54
TPM4-208ENST00000588410 ATAD2BQ9ULI0 1458 aa37.14■■■■□ 3.54
TPM4-208ENST00000588410 BAZ1AQ9NRL2 1556 aaPredicted RBP37.13■■■■□ 3.53
TPM4-208ENST00000588410 SMARCA2P51531 1590 aa37.06■■■■□ 3.52
TPM4-208ENST00000588410 HMGXB3Q12766 1538 aa36.91■■■■□ 3.5
TPM4-208ENST00000588410 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
TPM4-208ENST00000588410 BAZ1BQ9UIG0 1483 aaKnown RBP36.84■■■■□ 3.49
TPM4-208ENST00000588410 PEG3Q9GZU2 1588 aa36.79■■■■□ 3.48
TPM4-208ENST00000588410 ERCC6Q03468 1493 aa36.49■■■■□ 3.43
TPM4-208ENST00000588410 WIZO95785 1651 aa36.39■■■■□ 3.42
TPM4-208ENST00000588410 NESP48681 1621 aa36.39■■■■□ 3.42
TPM4-208ENST00000588410 RSF1Q96T23 1441 aaPredicted RBP36.36■■■■□ 3.41
TPM4-208ENST00000588410 LAMC3Q9Y6N6 1575 aa36.21■■■■□ 3.39
TPM4-208ENST00000588410 CUX2O14529 1486 aa36.17■■■■□ 3.38
TPM4-208ENST00000588410 CADPSQ9ULU8 1353 aa36.13■■■■□ 3.37
TPM4-208ENST00000588410 PDS5BQ9NTI5 1447 aa36.09■■■■□ 3.37
TPM4-208ENST00000588410 TOP2AP11388 1531 aaKnown RBP36.04■■■■□ 3.36
TPM4-208ENST00000588410 THOC2Q8NI27 1593 aaKnown RBP35.84■■■■□ 3.33
TPM4-208ENST00000588410 KIF21AQ7Z4S6 1674 aa35.81■■■■□ 3.32
TPM4-208ENST00000588410 CFTRP13569 1480 aa35.78■■■■□ 3.32
TPM4-208ENST00000588410 MRC2Q9UBG0 1479 aa35.7■■■■□ 3.31
TPM4-208ENST00000588410 FANCD2Q9BXW9 1451 aa35.69■■■■□ 3.3
TPM4-208ENST00000588410 CEP164Q9UPV0 1460 aa35.67■■■■□ 3.3
TPM4-208ENST00000588410 CCDC88BA6NC98 1476 aa35.67■■■■□ 3.3
TPM4-208ENST00000588410 DNAJC5Q9H3Z4 198 aa35.58■■■■□ 3.29
TPM4-208ENST00000588410 WDR62O43379 1518 aa35.53■■■■□ 3.28
TPM4-208ENST00000588410 URB2Q14146 1524 aaKnown RBP35.31■■■■□ 3.24
TPM4-208ENST00000588410 SUPT5HO00267 1087 aaKnown RBP35.29■■■■□ 3.24
TPM4-208ENST00000588410 PRDM2Q13029 1718 aa35.23■■■■□ 3.23
TPM4-208ENST00000588410 ABCC8Q09428 1581 aa35.05■■■■□ 3.2
TPM4-208ENST00000588410 TOPBP1Q92547 1522 aa35.04■■■■□ 3.2
TPM4-208ENST00000588410 IFT140Q96RY7 1462 aa34.96■■■■□ 3.19
TPM4-208ENST00000588410 DNMBPQ6XZF7 1577 aa34.94■■■■□ 3.18
TPM4-208ENST00000588410 ZNF608Q9ULD9 1512 aaPredicted RBP34.8■■■■□ 3.16
TPM4-208ENST00000588410 POLA1P09884 1462 aaPredicted RBP34.72■■■■□ 3.15
TPM4-208ENST00000588410 OSCARQ8IYS5 282 aa34.71■■■■□ 3.15
TPM4-208ENST00000588410 SOGA1O94964 1423 aa34.64■■■■□ 3.14
TPM4-208ENST00000588410 TARBP1Q13395 1621 aaKnown RBP34.61■■■■□ 3.13
TPM4-208ENST00000588410 CUX1P39880 1505 aa34.6■■■■□ 3.13
TPM4-208ENST00000588410 AQRO60306 1485 aaKnown RBP eCLIP34.6■■■■□ 3.131e-6■■■■□ 22
TPM4-208ENST00000588410 RAD54L2Q9Y4B4 1467 aa34.6■■■■□ 3.13
TPM4-208ENST00000588410 FGD5Q6ZNL6 1462 aa34.59■■■■□ 3.13
TPM4-208ENST00000588410 EIF4G3O43432 1585 aaKnown RBP34.57■■■■□ 3.13
TPM4-208ENST00000588410 TDRD9Q8NDG6 1382 aaKnown RBP34.5■■■■□ 3.11
TPM4-208ENST00000588410 FBLN2P98095 1184 aa34.38■■■■□ 3.09
TPM4-208ENST00000588410 WDR97A6NE52 1622 aa34.33■■■■□ 3.09
TPM4-208ENST00000588410 WRNQ14191 1432 aaPredicted RBP eCLIP34.32■■■■□ 3.08
TPM4-208ENST00000588410 TRIM41Q8WV44 630 aa34.32■■■■□ 3.08
TPM4-208ENST00000588410 GRIN2BQ13224 1484 aa34.26■■■■□ 3.07
TPM4-208ENST00000588410 SNAPC4Q5SXM2 1469 aa34.25■■■■□ 3.07
TPM4-208ENST00000588410 ABCA10Q8WWZ4 1543 aa34.23■■■■□ 3.07
TPM4-208ENST00000588410 CHMP7Q8WUX9 453 aaPredicted RBP34.2■■■■□ 3.07
TPM4-208ENST00000588410 GAPVD1Q14C86 1478 aa34.2■■■■□ 3.06
TPM4-208ENST00000588410 TOP2BQ02880 1626 aa34.19■■■■□ 3.06
TPM4-208ENST00000588410 MAGI1Q96QZ7 1491 aaPredicted RBP34.18■■■■□ 3.06
TPM4-208ENST00000588410 SYNJ1O43426 1573 aa34.15■■■■□ 3.06
TPM4-208ENST00000588410 CHD1O14646 1710 aa34.13■■■■□ 3.05
TPM4-208ENST00000588410 BIVM-ERCC5R4GMW8 1640 aa34.13■■■■□ 3.05
TPM4-208ENST00000588410 SYNJ2O15056 1496 aa34.07■■■■□ 3.04
TPM4-208ENST00000588410 ABCA5Q8WWZ7 1642 aa34.04■■■■□ 3.04
TPM4-208ENST00000588410 ARHGEF11O15085 1522 aa34.03■■■■□ 3.04
TPM4-208ENST00000588410 RIMBP3CA6NJZ7 1639 aa34.01■■■■□ 3.04
TPM4-208ENST00000588410 RIMBP3BA6NNM3 1639 aa34.01■■■■□ 3.04
TPM4-208ENST00000588410 RIMBP3Q9UFD9 1639 aa34.01■■■■□ 3.04
TPM4-208ENST00000588410 PBRM1Q86U86 1689 aa33.98■■■■□ 3.03
TPM4-208ENST00000588410 CYB5RLQ6IPT4 315 aa33.86■■■■□ 3.01
TPM4-208ENST00000588410 CLASP1Q7Z460 1538 aa33.85■■■■□ 3.01
TPM4-208ENST00000588410 FHAD1B1AJZ9 1412 aa33.81■■■■□ 3
TPM4-208ENST00000588410 ERICH3Q5RHP9 1530 aa33.8■■■■□ 3
TPM4-208ENST00000588410 ADAMTS12P58397 1594 aa33.78■■■■□ 3
TPM4-208ENST00000588410 GRIN2AQ12879 1464 aa33.78■■■■□ 3
TPM4-208ENST00000588410 ARAP1Q96P48 1450 aa33.73■■■□□ 2.99
TPM4-208ENST00000588410 KIF27Q86VH2 1401 aa33.66■■■□□ 2.98
TPM4-208ENST00000588410 NUP160Q12769 1436 aa33.64■■■□□ 2.98
TPM4-208ENST00000588410 CEP170Q5SW79 1584 aa33.58■■■□□ 2.97
TPM4-208ENST00000588410 IGF1RP08069 1367 aa33.56■■■□□ 2.96
TPM4-208ENST00000588410 JPH4Q96JJ6 628 aa33.4■■■□□ 2.94
TPM4-208ENST00000588410 CARMIL1Q5VZK9 1371 aa33.37■■■□□ 2.93
TPM4-208ENST00000588410 CUL7Q14999 1698 aa33.36■■■□□ 2.93
TPM4-208ENST00000588410 TRHP20396 242 aaPredicted RBP33.36■■■□□ 2.93
TPM4-208ENST00000588410 ERCC6L2Q5T890 1561 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms