RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 SHANK2Q9UPX8 1470 aa19.11■□□□□ 0.65
SS18-225ENST00000585121 DAPK1P53355 1430 aa19.11■□□□□ 0.65
SS18-225ENST00000585121 RRP7BPQ9NSQ0 103 aa19.1■□□□□ 0.65
SS18-225ENST00000585121 KDM5DQ9BY66 1539 aa19.1■□□□□ 0.65
SS18-225ENST00000585121 KIF15Q9NS87 1388 aa19.09■□□□□ 0.65
SS18-225ENST00000585121 DUOX2Q9NRD8 1548 aa19.09■□□□□ 0.65
SS18-225ENST00000585121 CHIC2Q9UKJ5 165 aa19.09■□□□□ 0.65
SS18-225ENST00000585121 ANKRD30AQ9BXX3 1397 aa19.07■□□□□ 0.64
SS18-225ENST00000585121 FBXO31Q5XUX0 539 aaPredicted RBP19.05■□□□□ 0.64
SS18-225ENST00000585121 DNMT1P26358 1616 aaKnown RBP19.05■□□□□ 0.64
SS18-225ENST00000585121 TNRQ92752 1358 aa19.05■□□□□ 0.64
SS18-225ENST00000585121 EIF2AK4Q9P2K8 1649 aaKnown RBP19.04■□□□□ 0.64
SS18-225ENST00000585121 PZPP20742 1482 aa19.04■□□□□ 0.64
SS18-225ENST00000585121 ERBINQ96RT1 1412 aa19.04■□□□□ 0.64
SS18-225ENST00000585121 RNF17Q9BXT8 1623 aaKnown RBP19.02■□□□□ 0.64
SS18-225ENST00000585121 NCOA1Q15788 1441 aa19.02■□□□□ 0.64
SS18-225ENST00000585121 CROCC2H7BZ55 1655 aa19.02■□□□□ 0.64
SS18-225ENST00000585121 FBXO41Q8TF61 875 aa19.02■□□□□ 0.64
SS18-225ENST00000585121 PTPRTO14522 1441 aa19.02■□□□□ 0.63
SS18-225ENST00000585121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.01■□□□□ 0.632e-7■■■□□ 19
SS18-225ENST00000585121 CAMSAP1Q5T5Y3 1602 aa19■□□□□ 0.63
SS18-225ENST00000585121 PKD2Q13563 968 aa19■□□□□ 0.63
SS18-225ENST00000585121 KANK1Q14678 1352 aa19■□□□□ 0.63
SS18-225ENST00000585121 CEP170BQ9Y4F5 1589 aaPredicted RBP19■□□□□ 0.63
SS18-225ENST00000585121 MYO3AQ8NEV4 1616 aa19■□□□□ 0.63
SS18-225ENST00000585121 STRCQ7RTU9 1775 aa19■□□□□ 0.63
SS18-225ENST00000585121 A2ML1A8K2U0 1454 aa18.99■□□□□ 0.63
SS18-225ENST00000585121 ABCC3O15438 1527 aa18.99■□□□□ 0.63
SS18-225ENST00000585121 PPARGC1BQ86YN6 1023 aaKnown RBP18.99■□□□□ 0.63
SS18-225ENST00000585121 CERKQ8TCT0 537 aa18.99■□□□□ 0.63
SS18-225ENST00000585121 NCKAP5LQ9HCH0 1330 aa18.99■□□□□ 0.63
SS18-225ENST00000585121 ZNF142P52746 1687 aaPredicted RBP18.97■□□□□ 0.63
SS18-225ENST00000585121 ZC3H13Q5T200 1668 aaKnown RBP18.97■□□□□ 0.63
SS18-225ENST00000585121 PLA2R1Q13018 1463 aa18.96■□□□□ 0.63
SS18-225ENST00000585121 THEMISQ8N1K5 641 aaPredicted RBP18.96■□□□□ 0.63
SS18-225ENST00000585121 ADGRL2O95490 1459 aa18.95■□□□□ 0.62
SS18-225ENST00000585121 NLRP1Q9C000 1473 aa18.95■□□□□ 0.62
SS18-225ENST00000585121 MROH1Q8NDA8 1641 aa18.93■□□□□ 0.62
SS18-225ENST00000585121 PRDM15P57071 1507 aaPredicted RBP18.92■□□□□ 0.62
SS18-225ENST00000585121 ERVK-7P63135 1459 aa18.91■□□□□ 0.62
SS18-225ENST00000585121 ARHGAP31Q2M1Z3 1444 aa18.9■□□□□ 0.62
SS18-225ENST00000585121 ANKLE2Q86XL3 938 aa18.9■□□□□ 0.62
SS18-225ENST00000585121 ANKRD50Q9ULJ7 1429 aa18.9■□□□□ 0.62
SS18-225ENST00000585121 ITGAEP38570 1179 aa18.9■□□□□ 0.62
SS18-225ENST00000585121 SPATA31D1Q6ZQQ2 1576 aa18.88■□□□□ 0.61
SS18-225ENST00000585121 UGGT1Q9NYU2 1555 aa18.88■□□□□ 0.61
SS18-225ENST00000585121 CEP152O94986 1710 aa18.88■□□□□ 0.61
SS18-225ENST00000585121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.88■□□□□ 0.61
SS18-225ENST00000585121 ROCK1Q13464 1354 aa18.87■□□□□ 0.61
SS18-225ENST00000585121 DEPDC5O75140 1603 aa18.87■□□□□ 0.61
SS18-225ENST00000585121 LMTK2Q8IWU2 1503 aa18.84■□□□□ 0.61
SS18-225ENST00000585121 STAG3Q9UJ98 1225 aa18.84■□□□□ 0.61
SS18-225ENST00000585121 ZNF335Q9H4Z2 1342 aaPredicted RBP18.82■□□□□ 0.6
SS18-225ENST00000585121 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
SS18-225ENST00000585121 CFAP65Q6ZU64 1925 aaKnown RBP18.81■□□□□ 0.6
SS18-225ENST00000585121 LTBP4Q8N2S1 1624 aa18.79■□□□□ 0.6
SS18-225ENST00000585121 EID1Q9Y6B2 187 aa18.78■□□□□ 0.6
SS18-225ENST00000585121 NPHP4O75161 1426 aaPredicted RBP18.78■□□□□ 0.6
SS18-225ENST00000585121 RRBP1Q9P2E9 1410 aaKnown RBP18.77■□□□□ 0.6
SS18-225ENST00000585121 IDI1Q13907 227 aa18.76■□□□□ 0.59
SS18-225ENST00000585121 EFCAB6Q5THR3 1501 aa18.76■□□□□ 0.59
SS18-225ENST00000585121 SLC52A1Q9NWF4 448 aa18.76■□□□□ 0.59
SS18-225ENST00000585121 POLR1AO95602 1720 aaPredicted RBP18.76■□□□□ 0.59
SS18-225ENST00000585121 MED14O60244 1454 aa18.75■□□□□ 0.59
SS18-225ENST00000585121 IQSEC2Q5JU85 1478 aa18.75■□□□□ 0.59
SS18-225ENST00000585121 TXNDC2Q86VQ3 553 aa18.75■□□□□ 0.59
SS18-225ENST00000585121 RPRD2Q5VT52 1461 aaKnown RBP18.75■□□□□ 0.59
SS18-225ENST00000585121 NEURL4Q96JN8 1562 aa18.74■□□□□ 0.59
SS18-225ENST00000585121 NOS1P29475 1434 aa18.74■□□□□ 0.59
SS18-225ENST00000585121 NUP155O75694 1391 aa18.74■□□□□ 0.59
SS18-225ENST00000585121 UBR1Q8IWV7 1749 aa18.72■□□□□ 0.59
SS18-225ENST00000585121 SCAF11Q99590 1463 aaKnown RBP18.72■□□□□ 0.59
SS18-225ENST00000585121 UNC13BO14795 1591 aa18.71■□□□□ 0.59
SS18-225ENST00000585121 TMEM2Q9UHN6 1383 aa18.71■□□□□ 0.59
SS18-225ENST00000585121 LTKP29376 864 aa18.7■□□□□ 0.58
SS18-225ENST00000585121 SLIT1O75093 1534 aa18.7■□□□□ 0.58
SS18-225ENST00000585121 TET3O43151 1660 aa18.69■□□□□ 0.58
SS18-225ENST00000585121 ARHGAP23Q9P227 1491 aa18.69■□□□□ 0.58
SS18-225ENST00000585121 PIK3C2BO00750 1634 aa18.68■□□□□ 0.58
SS18-225ENST00000585121 UBAP1LF5GYI3 381 aa18.68■□□□□ 0.58
SS18-225ENST00000585121 CPS1P31327 1500 aa18.68■□□□□ 0.58
SS18-225ENST00000585121 SYNMO15061 1565 aa18.67■□□□□ 0.58
SS18-225ENST00000585121 IQGAP1P46940 1657 aa18.67■□□□□ 0.58
SS18-225ENST00000585121 HDGFP51858 240 aaKnown RBP18.67■□□□□ 0.58
SS18-225ENST00000585121 CHGAP10645 457 aaKnown RBP18.65■□□□□ 0.58
SS18-225ENST00000585121 IQGAP3Q86VI3 1631 aa18.64■□□□□ 0.58
SS18-225ENST00000585121 KDM5AP29375 1690 aaKnown RBP18.64■□□□□ 0.57
SS18-225ENST00000585121 GCC2Q8IWJ2 1684 aa18.64■□□□□ 0.57
SS18-225ENST00000585121 BCANQ96GW7 911 aa18.64■□□□□ 0.57
SS18-225ENST00000585121 ADGRB3O60242 1522 aa18.64■□□□□ 0.57
SS18-225ENST00000585121 PPP1R15AO75807 674 aaPredicted RBP18.62■□□□□ 0.57
SS18-225ENST00000585121 NAIPQ13075 1403 aa18.62■□□□□ 0.57
SS18-225ENST00000585121 TOM1O60784 492 aa18.61■□□□□ 0.57
SS18-225ENST00000585121 TRIM52Q96A61 297 aa18.61■□□□□ 0.57
SS18-225ENST00000585121 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.6■□□□□ 0.57
SS18-225ENST00000585121 HFM1A2PYH4 1435 aa18.59■□□□□ 0.57
SS18-225ENST00000585121 E9PCH4 1651 aa18.58■□□□□ 0.57
SS18-225ENST00000585121 SLC26A8Q96RN1 970 aa18.57■□□□□ 0.56
SS18-225ENST00000585121 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
SS18-225ENST00000585121 RIMS2Q9UQ26 1411 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms