RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 NISCHQ9Y2I1 1504 aa30.25■■■□□ 2.43
SS18-225ENST00000585121 CCDC180Q9P1Z9 1646 aa26.95■■□□□ 1.9
SS18-225ENST00000585121 ABCC9O60706 1549 aa26.7■■□□□ 1.86
SS18-225ENST00000585121 RB1CC1Q8TDY2 1594 aa25.56■■□□□ 1.68
SS18-225ENST00000585121 DCAF8L2P0C7V8 631 aa25.53■■□□□ 1.68
SS18-225ENST00000585121 NACADO15069 1562 aa25.46■■□□□ 1.67
SS18-225ENST00000585121 MYO15BQ96JP2 1530 aa25.21■■□□□ 1.63
SS18-225ENST00000585121 ZCCHC6Q5VYS8 1495 aaKnown RBP25.13■■□□□ 1.61
SS18-225ENST00000585121 DCAF1Q9Y4B6 1507 aa25.01■■□□□ 1.59
SS18-225ENST00000585121 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
SS18-225ENST00000585121 UNC13AQ9UPW8 1703 aa24.82■■□□□ 1.56
SS18-225ENST00000585121 DNAJC5BQ9UF47 199 aa24.72■■□□□ 1.55
SS18-225ENST00000585121 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
SS18-225ENST00000585121 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
SS18-225ENST00000585121 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
SS18-225ENST00000585121 EIF4G1Q04637 1599 aaKnown RBP24.13■■□□□ 1.45
SS18-225ENST00000585121 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
SS18-225ENST00000585121 CECR2Q9BXF3 1484 aa24.03■■□□□ 1.44
SS18-225ENST00000585121 NCAPD3P42695 1498 aa23.52■■□□□ 1.36
SS18-225ENST00000585121 SMARCA4P51532 1647 aa23.5■■□□□ 1.35
SS18-225ENST00000585121 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
SS18-225ENST00000585121 BAZ1AQ9NRL2 1556 aaPredicted RBP23.47■■□□□ 1.35
SS18-225ENST00000585121 SMARCA2P51531 1590 aa23.45■■□□□ 1.34
SS18-225ENST00000585121 HMGXB3Q12766 1538 aa23.34■■□□□ 1.33
SS18-225ENST00000585121 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
SS18-225ENST00000585121 MROH2BQ7Z745 1585 aa23.29■■□□□ 1.32
SS18-225ENST00000585121 PEG3Q9GZU2 1588 aa23.26■■□□□ 1.31
SS18-225ENST00000585121 ERCC6Q03468 1493 aa23.08■■□□□ 1.29
SS18-225ENST00000585121 WIZO95785 1651 aa23■■□□□ 1.27
SS18-225ENST00000585121 NESP48681 1621 aa22.99■■□□□ 1.27
SS18-225ENST00000585121 RSF1Q96T23 1441 aaPredicted RBP22.97■■□□□ 1.27
SS18-225ENST00000585121 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
SS18-225ENST00000585121 CUX2O14529 1486 aa22.9■■□□□ 1.26
SS18-225ENST00000585121 CADPSQ9ULU8 1353 aa22.85■■□□□ 1.25
SS18-225ENST00000585121 PDS5BQ9NTI5 1447 aa22.85■■□□□ 1.25
SS18-225ENST00000585121 TOP2AP11388 1531 aaKnown RBP22.78■■□□□ 1.24
SS18-225ENST00000585121 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
SS18-225ENST00000585121 THOC2Q8NI27 1593 aaKnown RBP22.65■■□□□ 1.22
SS18-225ENST00000585121 CFTRP13569 1480 aa22.62■■□□□ 1.21
SS18-225ENST00000585121 MRC2Q9UBG0 1479 aa22.58■■□□□ 1.2
SS18-225ENST00000585121 FANCD2Q9BXW9 1451 aa22.56■■□□□ 1.2
SS18-225ENST00000585121 CEP164Q9UPV0 1460 aa22.56■■□□□ 1.2
SS18-225ENST00000585121 CCDC88BA6NC98 1476 aa22.53■■□□□ 1.2
SS18-225ENST00000585121 DNAJC5Q9H3Z4 198 aa22.53■■□□□ 1.2
SS18-225ENST00000585121 WDR62O43379 1518 aa22.47■■□□□ 1.19
SS18-225ENST00000585121 URB2Q14146 1524 aaKnown RBP22.31■■□□□ 1.16
SS18-225ENST00000585121 PRDM2Q13029 1718 aa22.31■■□□□ 1.16
SS18-225ENST00000585121 SUPT5HO00267 1087 aaKnown RBP22.3■■□□□ 1.16
SS18-225ENST00000585121 ABCC8Q09428 1581 aa22.19■■□□□ 1.14
SS18-225ENST00000585121 TOPBP1Q92547 1522 aa22.14■■□□□ 1.14
SS18-225ENST00000585121 IFT140Q96RY7 1462 aa22.11■■□□□ 1.13
SS18-225ENST00000585121 DNMBPQ6XZF7 1577 aa22.09■■□□□ 1.13
SS18-225ENST00000585121 ZNF608Q9ULD9 1512 aaPredicted RBP21.98■■□□□ 1.11
SS18-225ENST00000585121 OSCARQ8IYS5 282 aa21.98■■□□□ 1.11
SS18-225ENST00000585121 POLA1P09884 1462 aaPredicted RBP21.95■■□□□ 1.1
SS18-225ENST00000585121 SOGA1O94964 1423 aa21.91■■□□□ 1.1
SS18-225ENST00000585121 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
SS18-225ENST00000585121 AQRO60306 1485 aaKnown RBP eCLIP21.87■■□□□ 1.093e-6■■■■□ 24.5
SS18-225ENST00000585121 CUX1P39880 1505 aa21.86■■□□□ 1.09
SS18-225ENST00000585121 RAD54L2Q9Y4B4 1467 aa21.86■■□□□ 1.09
SS18-225ENST00000585121 FGD5Q6ZNL6 1462 aa21.85■■□□□ 1.09
SS18-225ENST00000585121 EIF4G3O43432 1585 aaKnown RBP21.85■■□□□ 1.09
SS18-225ENST00000585121 TDRD9Q8NDG6 1382 aaKnown RBP21.81■■□□□ 1.08
SS18-225ENST00000585121 FBLN2P98095 1184 aa21.75■■□□□ 1.07
SS18-225ENST00000585121 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
SS18-225ENST00000585121 TRIM41Q8WV44 630 aa21.72■■□□□ 1.07
SS18-225ENST00000585121 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
SS18-225ENST00000585121 GRIN2BQ13224 1484 aa21.67■■□□□ 1.06
SS18-225ENST00000585121 CHMP7Q8WUX9 453 aaPredicted RBP21.65■■□□□ 1.06
SS18-225ENST00000585121 SNAPC4Q5SXM2 1469 aa21.64■■□□□ 1.06
SS18-225ENST00000585121 ABCA10Q8WWZ4 1543 aa21.63■■□□□ 1.05
SS18-225ENST00000585121 GAPVD1Q14C86 1478 aa21.63■■□□□ 1.05
SS18-225ENST00000585121 MAGI1Q96QZ7 1491 aaPredicted RBP21.62■■□□□ 1.05
SS18-225ENST00000585121 TOP2BQ02880 1626 aa21.61■■□□□ 1.05
SS18-225ENST00000585121 CHD1O14646 1710 aa21.6■■□□□ 1.05
SS18-225ENST00000585121 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.04
SS18-225ENST00000585121 SYNJ1O43426 1573 aa21.56■■□□□ 1.04
SS18-225ENST00000585121 SYNJ2O15056 1496 aa21.54■■□□□ 1.04
SS18-225ENST00000585121 RIMBP3CA6NJZ7 1639 aa21.52■■□□□ 1.03
SS18-225ENST00000585121 RIMBP3BA6NNM3 1639 aa21.52■■□□□ 1.03
SS18-225ENST00000585121 RIMBP3Q9UFD9 1639 aa21.52■■□□□ 1.03
SS18-225ENST00000585121 ARHGEF11O15085 1522 aa21.52■■□□□ 1.03
SS18-225ENST00000585121 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
SS18-225ENST00000585121 PBRM1Q86U86 1689 aa21.5■■□□□ 1.03
SS18-225ENST00000585121 CYB5RLQ6IPT4 315 aa21.43■■□□□ 1.02
SS18-225ENST00000585121 CLASP1Q7Z460 1538 aa21.39■■□□□ 1.01
SS18-225ENST00000585121 FHAD1B1AJZ9 1412 aa21.38■■□□□ 1.01
SS18-225ENST00000585121 ERICH3Q5RHP9 1530 aa21.38■■□□□ 1.01
SS18-225ENST00000585121 GRIN2AQ12879 1464 aa21.36■■□□□ 1.01
SS18-225ENST00000585121 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
SS18-225ENST00000585121 ARAP1Q96P48 1450 aa21.32■■□□□ 1
SS18-225ENST00000585121 KIF27Q86VH2 1401 aa21.28■■□□□ 1
SS18-225ENST00000585121 NUP160Q12769 1436 aa21.27■■□□□ 1
SS18-225ENST00000585121 CEP170Q5SW79 1584 aa21.22■□□□□ 0.99
SS18-225ENST00000585121 IGF1RP08069 1367 aa21.21■□□□□ 0.99
SS18-225ENST00000585121 JPH4Q96JJ6 628 aa21.14■□□□□ 0.97
SS18-225ENST00000585121 TRHP20396 242 aaPredicted RBP21.13■□□□□ 0.97
SS18-225ENST00000585121 CUL7Q14999 1698 aa21.11■□□□□ 0.97
SS18-225ENST00000585121 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
SS18-225ENST00000585121 PRG4Q92954 1404 aaPredicted RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms