RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 EIF2AK4Q9P2K8 1649 aaKnown RBP36.94■■■■□ 3.5
SHMT1-206ENST00000579558 FAM135AQ9P2D6 1515 aa36.94■■■■□ 3.5
SHMT1-206ENST00000579558 FAM50AQ14320 339 aaKnown RBP36.93■■■■□ 3.5
SHMT1-206ENST00000579558 KDM5DQ9BY66 1539 aa36.93■■■■□ 3.5
SHMT1-206ENST00000579558 KIF15Q9NS87 1388 aa36.92■■■■□ 3.5
SHMT1-206ENST00000579558 RNF17Q9BXT8 1623 aaKnown RBP36.91■■■■□ 3.5
SHMT1-206ENST00000579558 PTPRKQ15262 1439 aa36.89■■■■□ 3.5
SHMT1-206ENST00000579558 RRP7BPQ9NSQ0 103 aa36.89■■■■□ 3.5
SHMT1-206ENST00000579558 WASHC2CQ9Y4E1 1318 aa36.88■■■■□ 3.49
SHMT1-206ENST00000579558 PPARGC1BQ86YN6 1023 aaKnown RBP36.88■■■■□ 3.49
SHMT1-206ENST00000579558 CHIC2Q9UKJ5 165 aa36.87■■■■□ 3.49
SHMT1-206ENST00000579558 ANKRD30AQ9BXX3 1397 aa36.84■■■■□ 3.49
SHMT1-206ENST00000579558 ERBINQ96RT1 1412 aa36.83■■■■□ 3.49
SHMT1-206ENST00000579558 MROH1Q8NDA8 1641 aa36.79■■■■□ 3.48
SHMT1-206ENST00000579558 MYO3AQ8NEV4 1616 aa36.79■■■■□ 3.48
SHMT1-206ENST00000579558 PZPP20742 1482 aa36.78■■■■□ 3.48
SHMT1-206ENST00000579558 ZC3H13Q5T200 1668 aaKnown RBP36.77■■■■□ 3.48
SHMT1-206ENST00000579558 NCOA1Q15788 1441 aa36.76■■■■□ 3.48
SHMT1-206ENST00000579558 ADGRL2O95490 1459 aa36.76■■■■□ 3.48
SHMT1-206ENST00000579558 ABCC3O15438 1527 aa36.76■■■■□ 3.48
SHMT1-206ENST00000579558 ZNF142P52746 1687 aaPredicted RBP36.73■■■■□ 3.47
SHMT1-206ENST00000579558 FBXO31Q5XUX0 539 aaPredicted RBP36.72■■■■□ 3.47
SHMT1-206ENST00000579558 STRCQ7RTU9 1775 aa36.72■■■■□ 3.47
SHMT1-206ENST00000579558 CEP152O94986 1710 aa36.7■■■■□ 3.47
SHMT1-206ENST00000579558 CEP170BQ9Y4F5 1589 aaPredicted RBP36.7■■■■□ 3.46
SHMT1-206ENST00000579558 PRDM15P57071 1507 aaPredicted RBP36.69■■■■□ 3.46
SHMT1-206ENST00000579558 TNRQ92752 1358 aa36.68■■■■□ 3.46
SHMT1-206ENST00000579558 DEPDC5O75140 1603 aa36.67■■■■□ 3.46
SHMT1-206ENST00000579558 CAMSAP1Q5T5Y3 1602 aa36.65■■■■□ 3.46
SHMT1-206ENST00000579558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.64■■■■□ 3.46
SHMT1-206ENST00000579558 DMRT2Q9Y5R5 561 aa36.62■■■■□ 3.45
SHMT1-206ENST00000579558 A2ML1A8K2U0 1454 aa36.62■■■■□ 3.45
SHMT1-206ENST00000579558 KANK1Q14678 1352 aa36.6■■■■□ 3.45
SHMT1-206ENST00000579558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.6■■■■□ 3.45
SHMT1-206ENST00000579558 FBXO41Q8TF61 875 aa36.58■■■■□ 3.45
SHMT1-206ENST00000579558 ANKRD50Q9ULJ7 1429 aa36.57■■■■□ 3.44
SHMT1-206ENST00000579558 SPATA31D1Q6ZQQ2 1576 aa36.56■■■■□ 3.44
SHMT1-206ENST00000579558 ITGAEP38570 1179 aa36.55■■■■□ 3.44
SHMT1-206ENST00000579558 ERVK-7P63135 1459 aa36.55■■■■□ 3.44
SHMT1-206ENST00000579558 ROCK1Q13464 1354 aa36.53■■■■□ 3.44
SHMT1-206ENST00000579558 PTPRTO14522 1441 aa36.53■■■■□ 3.44
SHMT1-206ENST00000579558 PLA2R1Q13018 1463 aa36.53■■■■□ 3.44
SHMT1-206ENST00000579558 NLRP1Q9C000 1473 aa36.53■■■■□ 3.44
SHMT1-206ENST00000579558 VWDEQ8N2E2 1590 aa36.51■■■■□ 3.44
SHMT1-206ENST00000579558 CFAP65Q6ZU64 1925 aaKnown RBP36.51■■■■□ 3.43
SHMT1-206ENST00000579558 ARHGAP31Q2M1Z3 1444 aa36.51■■■■□ 3.43
SHMT1-206ENST00000579558 RRBP1Q9P2E9 1410 aaKnown RBP36.5■■■■□ 3.43
SHMT1-206ENST00000579558 NCKAP5LQ9HCH0 1330 aa36.48■■■■□ 3.43
SHMT1-206ENST00000579558 LMTK2Q8IWU2 1503 aa36.48■■■■□ 3.43
SHMT1-206ENST00000579558 PKD2Q13563 968 aa36.45■■■■□ 3.43
SHMT1-206ENST00000579558 UGGT1Q9NYU2 1555 aa36.44■■■■□ 3.42
SHMT1-206ENST00000579558 THEMISQ8N1K5 641 aaPredicted RBP36.39■■■■□ 3.42
SHMT1-206ENST00000579558 EFCAB6Q5THR3 1501 aa36.38■■■■□ 3.41
SHMT1-206ENST00000579558 UNC13BO14795 1591 aa36.37■■■■□ 3.41
SHMT1-206ENST00000579558 POLR1AO95602 1720 aaPredicted RBP36.34■■■■□ 3.41
SHMT1-206ENST00000579558 CERKQ8TCT0 537 aa36.32■■■■□ 3.4
SHMT1-206ENST00000579558 TET3O43151 1660 aa36.29■■■■□ 3.4
SHMT1-206ENST00000579558 UBR1Q8IWV7 1749 aa36.28■■■■□ 3.4
SHMT1-206ENST00000579558 ANKLE2Q86XL3 938 aa36.28■■■■□ 3.4
SHMT1-206ENST00000579558 NEURL4Q96JN8 1562 aa36.27■■■■□ 3.4
SHMT1-206ENST00000579558 GCC2Q8IWJ2 1684 aa36.25■■■■□ 3.39
SHMT1-206ENST00000579558 RPRD2Q5VT52 1461 aaKnown RBP36.24■■■■□ 3.39
SHMT1-206ENST00000579558 NOS1P29475 1434 aa36.24■■■■□ 3.39
SHMT1-206ENST00000579558 SYNMO15061 1565 aa36.23■■■■□ 3.39
SHMT1-206ENST00000579558 PIK3C2BO00750 1634 aa36.23■■■■□ 3.39
SHMT1-206ENST00000579558 IQGAP3Q86VI3 1631 aa36.23■■■■□ 3.39
SHMT1-206ENST00000579558 LTBP4Q8N2S1 1624 aa36.21■■■■□ 3.39
SHMT1-206ENST00000579558 NUP155O75694 1391 aa36.2■■■■□ 3.39
SHMT1-206ENST00000579558 ZNF335Q9H4Z2 1342 aaPredicted RBP36.17■■■■□ 3.38
SHMT1-206ENST00000579558 IDI1Q13907 227 aa36.17■■■■□ 3.38
SHMT1-206ENST00000579558 STAG3Q9UJ98 1225 aa36.16■■■■□ 3.38
SHMT1-206ENST00000579558 MED14O60244 1454 aa36.16■■■■□ 3.38
SHMT1-206ENST00000579558 NPHP4O75161 1426 aaPredicted RBP36.16■■■■□ 3.38
SHMT1-206ENST00000579558 NAIPQ13075 1403 aa36.15■■■■□ 3.38
SHMT1-206ENST00000579558 E9PCH4 1651 aa36.14■■■■□ 3.38
SHMT1-206ENST00000579558 KDM5AP29375 1690 aaKnown RBP36.13■■■■□ 3.37
SHMT1-206ENST00000579558 SLIT1O75093 1534 aa36.12■■■■□ 3.37
SHMT1-206ENST00000579558 ARHGAP23Q9P227 1491 aa36.11■■■■□ 3.37
SHMT1-206ENST00000579558 IQGAP1P46940 1657 aa36.11■■■■□ 3.37
SHMT1-206ENST00000579558 SLC52A1Q9NWF4 448 aa36.11■■■■□ 3.37
SHMT1-206ENST00000579558 SCAF11Q99590 1463 aaKnown RBP36.09■■■■□ 3.37
SHMT1-206ENST00000579558 ADGRB3O60242 1522 aa36.08■■■■□ 3.37
SHMT1-206ENST00000579558 HFM1A2PYH4 1435 aa36.08■■■■□ 3.37
SHMT1-206ENST00000579558 TMEM2Q9UHN6 1383 aa36.06■■■■□ 3.36
SHMT1-206ENST00000579558 TXNDC2Q86VQ3 553 aa36.05■■■■□ 3.36
SHMT1-206ENST00000579558 LTKP29376 864 aa36.04■■■■□ 3.36
SHMT1-206ENST00000579558 EID1Q9Y6B2 187 aa36.04■■■■□ 3.36
SHMT1-206ENST00000579558 IQSEC2Q5JU85 1478 aa36.02■■■■□ 3.36
SHMT1-206ENST00000579558 MYO5BQ9ULV0 1848 aa35.94■■■■□ 3.34
SHMT1-206ENST00000579558 TMEM131LA2VDJ0 1609 aa35.94■■■■□ 3.34
SHMT1-206ENST00000579558 CPS1P31327 1500 aa35.93■■■■□ 3.34
SHMT1-206ENST00000579558 TRIM52Q96A61 297 aa35.92■■■■□ 3.34
SHMT1-206ENST00000579558 SPHKAPQ2M3C7 1700 aa35.91■■■■□ 3.34
SHMT1-206ENST00000579558 CHGAP10645 457 aaKnown RBP35.9■■■■□ 3.34
SHMT1-206ENST00000579558 ZFYVE9O95405 1425 aa35.83■■■■□ 3.33
SHMT1-206ENST00000579558 RIMS2Q9UQ26 1411 aa35.83■■■■□ 3.33
SHMT1-206ENST00000579558 STRCP1A6NGW2 1772 aa35.82■■■■□ 3.33
SHMT1-206ENST00000579558 HDGFP51858 240 aaKnown RBP35.79■■■■□ 3.32
SHMT1-206ENST00000579558 PPP1R15AO75807 674 aaPredicted RBP35.78■■■■□ 3.32
SHMT1-206ENST00000579558 SLC4A1APQ9BWU0 796 aaKnown RBP35.78■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms