RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 DAPK1P53355 1430 aa23.98■■□□□ 1.43
SF3B3-215ENST00000577085 TCOF1Q13428 1488 aaKnown RBP23.98■■□□□ 1.43
SF3B3-215ENST00000577085 DUOX2Q9NRD8 1548 aa23.98■■□□□ 1.43
SF3B3-215ENST00000577085 CROCC2H7BZ55 1655 aa23.97■■□□□ 1.43
SF3B3-215ENST00000577085 FAM50AQ14320 339 aaKnown RBP23.97■■□□□ 1.43
SF3B3-215ENST00000577085 KIF15Q9NS87 1388 aa23.97■■□□□ 1.43
SF3B3-215ENST00000577085 RRP7BPQ9NSQ0 103 aa23.97■■□□□ 1.43
SF3B3-215ENST00000577085 EIF2AK4Q9P2K8 1649 aaKnown RBP23.96■■□□□ 1.43
SF3B3-215ENST00000577085 DNMT1P26358 1616 aaKnown RBP23.95■■□□□ 1.43
SF3B3-215ENST00000577085 MYO3AQ8NEV4 1616 aa23.95■■□□□ 1.43
SF3B3-215ENST00000577085 STRCQ7RTU9 1775 aa23.93■■□□□ 1.42
SF3B3-215ENST00000577085 RNF17Q9BXT8 1623 aaKnown RBP23.93■■□□□ 1.42
SF3B3-215ENST00000577085 CHIC2Q9UKJ5 165 aa23.93■■□□□ 1.42
SF3B3-215ENST00000577085 PZPP20742 1482 aa23.93■■□□□ 1.42
SF3B3-215ENST00000577085 ANKRD30AQ9BXX3 1397 aa23.92■■□□□ 1.42
SF3B3-215ENST00000577085 CAMSAP1Q5T5Y3 1602 aa23.92■■□□□ 1.42
SF3B3-215ENST00000577085 TNRQ92752 1358 aa23.91■■□□□ 1.42
SF3B3-215ENST00000577085 CEP170BQ9Y4F5 1589 aaPredicted RBP23.91■■□□□ 1.42
SF3B3-215ENST00000577085 FBXO31Q5XUX0 539 aaPredicted RBP23.91■■□□□ 1.42
SF3B3-215ENST00000577085 NCOA1Q15788 1441 aa23.91■■□□□ 1.42
SF3B3-215ENST00000577085 FBXO41Q8TF61 875 aa23.9■■□□□ 1.42
SF3B3-215ENST00000577085 ERBINQ96RT1 1412 aa23.9■■□□□ 1.42
SF3B3-215ENST00000577085 ZNF142P52746 1687 aaPredicted RBP23.89■■□□□ 1.42
SF3B3-215ENST00000577085 ZC3H13Q5T200 1668 aaKnown RBP23.89■■□□□ 1.41
SF3B3-215ENST00000577085 PTPRTO14522 1441 aa23.87■■□□□ 1.41
SF3B3-215ENST00000577085 ABCC3O15438 1527 aa23.87■■□□□ 1.41
SF3B3-215ENST00000577085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.86■■□□□ 1.413e-11■□□□□ 8.8
SF3B3-215ENST00000577085 A2ML1A8K2U0 1454 aa23.86■■□□□ 1.41
SF3B3-215ENST00000577085 CERKQ8TCT0 537 aa23.85■■□□□ 1.41
SF3B3-215ENST00000577085 KANK1Q14678 1352 aa23.84■■□□□ 1.41
SF3B3-215ENST00000577085 PKD2Q13563 968 aa23.84■■□□□ 1.41
SF3B3-215ENST00000577085 NCKAP5LQ9HCH0 1330 aa23.84■■□□□ 1.41
SF3B3-215ENST00000577085 PLA2R1Q13018 1463 aa23.83■■□□□ 1.41
SF3B3-215ENST00000577085 PPARGC1BQ86YN6 1023 aaKnown RBP23.83■■□□□ 1.41
SF3B3-215ENST00000577085 MROH1Q8NDA8 1641 aa23.81■■□□□ 1.4
SF3B3-215ENST00000577085 NLRP1Q9C000 1473 aa23.8■■□□□ 1.4
SF3B3-215ENST00000577085 PRDM15P57071 1507 aaPredicted RBP23.79■■□□□ 1.4
SF3B3-215ENST00000577085 CEP152O94986 1710 aa23.79■■□□□ 1.4
SF3B3-215ENST00000577085 THEMISQ8N1K5 641 aaPredicted RBP23.78■■□□□ 1.4
SF3B3-215ENST00000577085 ADGRL2O95490 1459 aa23.77■■□□□ 1.4
SF3B3-215ENST00000577085 ERVK-7P63135 1459 aa23.75■■□□□ 1.39
SF3B3-215ENST00000577085 SPATA31D1Q6ZQQ2 1576 aa23.74■■□□□ 1.39
SF3B3-215ENST00000577085 UGGT1Q9NYU2 1555 aa23.74■■□□□ 1.39
SF3B3-215ENST00000577085 DEPDC5O75140 1603 aa23.74■■□□□ 1.39
SF3B3-215ENST00000577085 ITGAEP38570 1179 aa23.72■■□□□ 1.39
SF3B3-215ENST00000577085 ANKLE2Q86XL3 938 aa23.72■■□□□ 1.39
SF3B3-215ENST00000577085 ANKRD50Q9ULJ7 1429 aa23.72■■□□□ 1.39
SF3B3-215ENST00000577085 ARHGAP31Q2M1Z3 1444 aa23.71■■□□□ 1.39
SF3B3-215ENST00000577085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.71■■□□□ 1.39
SF3B3-215ENST00000577085 CFAP65Q6ZU64 1925 aaKnown RBP23.67■■□□□ 1.38
SF3B3-215ENST00000577085 POLR1AO95602 1720 aaPredicted RBP23.66■■□□□ 1.38
SF3B3-215ENST00000577085 ZNF335Q9H4Z2 1342 aaPredicted RBP23.65■■□□□ 1.38
SF3B3-215ENST00000577085 ROCK1Q13464 1354 aa23.65■■□□□ 1.38
SF3B3-215ENST00000577085 LMTK2Q8IWU2 1503 aa23.64■■□□□ 1.38
SF3B3-215ENST00000577085 STAG3Q9UJ98 1225 aa23.64■■□□□ 1.37
SF3B3-215ENST00000577085 LTBP4Q8N2S1 1624 aa23.63■■□□□ 1.37
SF3B3-215ENST00000577085 VWDEQ8N2E2 1590 aa23.62■■□□□ 1.37
SF3B3-215ENST00000577085 NEURL4Q96JN8 1562 aa23.6■■□□□ 1.37
SF3B3-215ENST00000577085 NPHP4O75161 1426 aaPredicted RBP23.59■■□□□ 1.37
SF3B3-215ENST00000577085 EFCAB6Q5THR3 1501 aa23.59■■□□□ 1.37
SF3B3-215ENST00000577085 IQSEC2Q5JU85 1478 aa23.57■■□□□ 1.36
SF3B3-215ENST00000577085 UBR1Q8IWV7 1749 aa23.57■■□□□ 1.36
SF3B3-215ENST00000577085 EID1Q9Y6B2 187 aa23.56■■□□□ 1.36
SF3B3-215ENST00000577085 MED14O60244 1454 aa23.55■■□□□ 1.36
SF3B3-215ENST00000577085 RPRD2Q5VT52 1461 aaKnown RBP23.54■■□□□ 1.36
SF3B3-215ENST00000577085 IDI1Q13907 227 aa23.53■■□□□ 1.36
SF3B3-215ENST00000577085 TXNDC2Q86VQ3 553 aa23.53■■□□□ 1.36
SF3B3-215ENST00000577085 IQGAP1P46940 1657 aa23.53■■□□□ 1.36
SF3B3-215ENST00000577085 UNC13BO14795 1591 aa23.52■■□□□ 1.36
SF3B3-215ENST00000577085 PIK3C2BO00750 1634 aa23.52■■□□□ 1.36
SF3B3-215ENST00000577085 RRBP1Q9P2E9 1410 aaKnown RBP23.52■■□□□ 1.36
SF3B3-215ENST00000577085 SLC52A1Q9NWF4 448 aa23.52■■□□□ 1.36
SF3B3-215ENST00000577085 TET3O43151 1660 aa23.51■■□□□ 1.35
SF3B3-215ENST00000577085 SCAF11Q99590 1463 aaKnown RBP23.51■■□□□ 1.35
SF3B3-215ENST00000577085 NOS1P29475 1434 aa23.5■■□□□ 1.35
SF3B3-215ENST00000577085 NUP155O75694 1391 aa23.5■■□□□ 1.35
SF3B3-215ENST00000577085 SYNMO15061 1565 aa23.49■■□□□ 1.35
SF3B3-215ENST00000577085 SLIT1O75093 1534 aa23.49■■□□□ 1.35
SF3B3-215ENST00000577085 CPS1P31327 1500 aa23.49■■□□□ 1.35
SF3B3-215ENST00000577085 TMEM2Q9UHN6 1383 aa23.48■■□□□ 1.35
SF3B3-215ENST00000577085 UBAP1LF5GYI3 381 aa23.47■■□□□ 1.35
SF3B3-215ENST00000577085 ARHGAP23Q9P227 1491 aa23.47■■□□□ 1.35
SF3B3-215ENST00000577085 GCC2Q8IWJ2 1684 aa23.47■■□□□ 1.35
SF3B3-215ENST00000577085 KDM5AP29375 1690 aaKnown RBP23.46■■□□□ 1.35
SF3B3-215ENST00000577085 LTKP29376 864 aa23.46■■□□□ 1.35
SF3B3-215ENST00000577085 IQGAP3Q86VI3 1631 aa23.44■■□□□ 1.34
SF3B3-215ENST00000577085 ADGRB3O60242 1522 aa23.43■■□□□ 1.34
SF3B3-215ENST00000577085 CHGAP10645 457 aaKnown RBP23.41■■□□□ 1.34
SF3B3-215ENST00000577085 BCANQ96GW7 911 aa23.41■■□□□ 1.34
SF3B3-215ENST00000577085 E9PCH4 1651 aa23.39■■□□□ 1.34
SF3B3-215ENST00000577085 HDGFP51858 240 aaKnown RBP23.39■■□□□ 1.33
SF3B3-215ENST00000577085 SCAF1Q9H7N4 1312 aaKnown RBP23.38■■□□□ 1.33
SF3B3-215ENST00000577085 PPP1R15AO75807 674 aaPredicted RBP23.38■■□□□ 1.33
SF3B3-215ENST00000577085 TOM1O60784 492 aa23.37■■□□□ 1.33
SF3B3-215ENST00000577085 NAIPQ13075 1403 aa23.35■■□□□ 1.33
SF3B3-215ENST00000577085 PIP4K2BP78356 416 aa23.33■■□□□ 1.33
SF3B3-215ENST00000577085 TRIM52Q96A61 297 aa23.33■■□□□ 1.33
SF3B3-215ENST00000577085 SLC26A8Q96RN1 970 aa23.32■■□□□ 1.32
SF3B3-215ENST00000577085 HFM1A2PYH4 1435 aa23.31■■□□□ 1.32
SF3B3-215ENST00000577085 RIMS2Q9UQ26 1411 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms