RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ST20-MTHFSA0A0A6YYL1 179 aa31.09■■■□□ 2.57
VPS53-211ENST00000571805 ERCC6L2Q5T890 1561 aa31.08■■■□□ 2.57
VPS53-211ENST00000571805 ABCC2Q92887 1545 aa31.07■■■□□ 2.56
VPS53-211ENST00000571805 PPP4R2Q9NY27 417 aa31.06■■■□□ 2.56
VPS53-211ENST00000571805 MYO5CQ9NQX4 1742 aa31.05■■■□□ 2.56
VPS53-211ENST00000571805 CNGB1Q14028 1251 aaPredicted RBP31.05■■■□□ 2.56
VPS53-211ENST00000571805 PLA2R1Q13018 1463 aa31.04■■■□□ 2.56
VPS53-211ENST00000571805 PLXNC1O60486 1568 aa31.04■■■□□ 2.56
VPS53-211ENST00000571805 CCDC144AA2RUR9 1427 aa31.04■■■□□ 2.56
VPS53-211ENST00000571805 TRPM1Q7Z4N2 1603 aa31.04■■■□□ 2.56
VPS53-211ENST00000571805 PRAG1Q86YV5 1406 aa31.02■■■□□ 2.56
VPS53-211ENST00000571805 PLEKHH2Q8IVE3 1493 aa31.01■■■□□ 2.56
VPS53-211ENST00000571805 E9PCH4 1651 aa31.01■■■□□ 2.56
VPS53-211ENST00000571805 SMG6Q86US8 1419 aaKnown RBP31.01■■■□□ 2.55
VPS53-211ENST00000571805 PNISRQ8TF01 805 aaKnown RBP31■■■□□ 2.55
VPS53-211ENST00000571805 IQGAP3Q86VI3 1631 aa30.99■■■□□ 2.55
VPS53-211ENST00000571805 ANP32EQ9BTT0 268 aa30.97■■■□□ 2.55
VPS53-211ENST00000571805 DUOX2Q9NRD8 1548 aa30.93■■■□□ 2.54
VPS53-211ENST00000571805 A2MP01023 1474 aa30.93■■■□□ 2.54
VPS53-211ENST00000571805 KTN1Q86UP2 1357 aaKnown RBP30.93■■■□□ 2.54
VPS53-211ENST00000571805 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.93■■■□□ 2.54
VPS53-211ENST00000571805 GPRASP1Q5JY77 1395 aa30.92■■■□□ 2.54
VPS53-211ENST00000571805 TMC1Q8TDI8 760 aa30.92■■■□□ 2.54
VPS53-211ENST00000571805 MAGI2Q86UL8 1455 aa30.92■■■□□ 2.54
VPS53-211ENST00000571805 RGL3Q3MIN7 710 aa30.91■■■□□ 2.54
VPS53-211ENST00000571805 NUDCQ9Y266 331 aa30.9■■■□□ 2.54
VPS53-211ENST00000571805 PLCH2O75038 1416 aa30.9■■■□□ 2.54
VPS53-211ENST00000571805 ATP10AO60312 1499 aa30.89■■■□□ 2.54
VPS53-211ENST00000571805 RALBP1Q15311 655 aa30.89■■■□□ 2.54
VPS53-211ENST00000571805 NBPF1Q3BBV0 1214 aa30.89■■■□□ 2.54
VPS53-211ENST00000571805 LAMC1P11047 1609 aa30.89■■■□□ 2.54
VPS53-211ENST00000571805 LRPPRCP42704 1394 aaKnown RBP30.88■■■□□ 2.53
VPS53-211ENST00000571805 MYBBP1AQ9BQG0 1328 aaKnown RBP30.88■■■□□ 2.53
VPS53-211ENST00000571805 BRD4O60885 1362 aaPredicted RBP30.88■■■□□ 2.53
VPS53-211ENST00000571805 ERBINQ96RT1 1412 aa30.88■■■□□ 2.53
VPS53-211ENST00000571805 ZCCHC11Q5TAX3 1644 aaKnown RBP30.88■■■□□ 2.53
VPS53-211ENST00000571805 RNF123Q5XPI4 1314 aa30.86■■■□□ 2.53
VPS53-211ENST00000571805 UHRF1BP1LA0JNW5 1464 aa30.84■■■□□ 2.53
VPS53-211ENST00000571805 PRDM15P57071 1507 aaPredicted RBP30.84■■■□□ 2.53
VPS53-211ENST00000571805 CLASP1Q7Z460 1538 aa30.83■■■□□ 2.53
VPS53-211ENST00000571805 B4GALNT3Q6L9W6 998 aa30.83■■■□□ 2.53
VPS53-211ENST00000571805 EFCAB2Q5VUJ9 269 aa30.81■■■□□ 2.52
VPS53-211ENST00000571805 ABCC1P33527 1531 aa30.81■■■□□ 2.52
VPS53-211ENST00000571805 EIF2AK4Q9P2K8 1649 aaKnown RBP30.79■■■□□ 2.52
VPS53-211ENST00000571805 COL17A1Q9UMD9 1497 aaPredicted RBP30.78■■■□□ 2.52
VPS53-211ENST00000571805 PARD3Q8TEW0 1356 aa30.77■■■□□ 2.52
VPS53-211ENST00000571805 PER1O15534 1290 aaPredicted RBP30.77■■■□□ 2.52
VPS53-211ENST00000571805 TESK2Q96S53 571 aa30.77■■■□□ 2.52
VPS53-211ENST00000571805 TRAPPC8Q9Y2L5 1435 aa30.77■■■□□ 2.52
VPS53-211ENST00000571805 FANCIQ9NVI1 1328 aa30.74■■■□□ 2.51
VPS53-211ENST00000571805 SENP3-EIF4A1A0A087X0R7 540 aa30.72■■■□□ 2.51
VPS53-211ENST00000571805 DISP3Q9P2K9 1392 aa30.72■■■□□ 2.51
VPS53-211ENST00000571805 NLRP13Q86W25 1043 aa30.71■■■□□ 2.51
VPS53-211ENST00000571805 MSH5O43196 834 aa30.69■■■□□ 2.5
VPS53-211ENST00000571805 RNF17Q9BXT8 1623 aaKnown RBP30.69■■■□□ 2.5
VPS53-211ENST00000571805 WASHC2CQ9Y4E1 1318 aa30.67■■■□□ 2.5
VPS53-211ENST00000571805 ARAP3Q8WWN8 1544 aa30.66■■■□□ 2.5
VPS53-211ENST00000571805 RTEL1-TNFRSF6BF6WH68 1400 aa30.65■■■□□ 2.5
VPS53-211ENST00000571805 SPAG9O60271 1321 aaKnown RBP30.63■■■□□ 2.49
VPS53-211ENST00000571805 ZFYVE16Q7Z3T8 1539 aa30.62■■■□□ 2.49
VPS53-211ENST00000571805 TMF1P82094 1093 aa30.61■■■□□ 2.49
VPS53-211ENST00000571805 AFAP1Q8N556 730 aa30.6■■■□□ 2.49
VPS53-211ENST00000571805 PANK3Q9H999 370 aa30.59■■■□□ 2.49
VPS53-211ENST00000571805 MADDQ8WXG6 1647 aa30.59■■■□□ 2.49
VPS53-211ENST00000571805 TRPM2O94759 1503 aa30.58■■■□□ 2.49
VPS53-211ENST00000571805 DEPDC5O75140 1603 aa30.57■■■□□ 2.48
VPS53-211ENST00000571805 PTPRTO14522 1441 aa30.56■■■□□ 2.48
VPS53-211ENST00000571805 CEP152O94986 1710 aa30.55■■■□□ 2.48
VPS53-211ENST00000571805 IQGAP1P46940 1657 aa30.54■■■□□ 2.48
VPS53-211ENST00000571805 SPHKAPQ2M3C7 1700 aa30.54■■■□□ 2.48
VPS53-211ENST00000571805 CC2D1BQ5T0F9 858 aaKnown RBP30.54■■■□□ 2.48
VPS53-211ENST00000571805 CCDC136Q96JN2 1154 aa30.52■■■□□ 2.48
VPS53-211ENST00000571805 INSRP06213 1382 aa30.52■■■□□ 2.48
VPS53-211ENST00000571805 CLTCL1P53675 1640 aa30.5■■■□□ 2.47
VPS53-211ENST00000571805 PDE3BQ13370 1112 aa30.5■■■□□ 2.47
VPS53-211ENST00000571805 ZMYM4Q5VZL5 1548 aa30.5■■■□□ 2.47
VPS53-211ENST00000571805 TET3O43151 1660 aa30.5■■■□□ 2.47
VPS53-211ENST00000571805 ABCA9Q8IUA7 1624 aa30.49■■■□□ 2.47
VPS53-211ENST00000571805 WDR7Q9Y4E6 1490 aa30.49■■■□□ 2.47
VPS53-211ENST00000571805 INO80Q9ULG1 1556 aaPredicted RBP30.48■■■□□ 2.47
VPS53-211ENST00000571805 STAC3Q96MF2 364 aa30.48■■■□□ 2.47
VPS53-211ENST00000571805 VWDEQ8N2E2 1590 aa30.47■■■□□ 2.47
VPS53-211ENST00000571805 BLMP54132 1417 aaPredicted RBP30.47■■■□□ 2.47
VPS53-211ENST00000571805 ATP7AQ04656 1500 aa30.46■■■□□ 2.47
VPS53-211ENST00000571805 RRP1P56182 461 aaKnown RBP30.46■■■□□ 2.47
VPS53-211ENST00000571805 SCAPERQ9BY12 1400 aa30.46■■■□□ 2.47
VPS53-211ENST00000571805 SALL2Q9Y467 1007 aaPredicted RBP30.46■■■□□ 2.47
VPS53-211ENST00000571805 FANCAO15360 1455 aa30.45■■■□□ 2.47
VPS53-211ENST00000571805 RCAN3Q9UKA8 241 aa30.44■■■□□ 2.46
VPS53-211ENST00000571805 SCAF11Q99590 1463 aaKnown RBP30.42■■■□□ 2.46
VPS53-211ENST00000571805 KANK1Q14678 1352 aa30.39■■■□□ 2.46
VPS53-211ENST00000571805 CDCA7LQ96GN5 454 aa30.38■■■□□ 2.45
VPS53-211ENST00000571805 NEURL4Q96JN8 1562 aa30.37■■■□□ 2.45
VPS53-211ENST00000571805 MROH1Q8NDA8 1641 aa30.36■■■□□ 2.45
VPS53-211ENST00000571805 SYNMO15061 1565 aa30.36■■■□□ 2.45
VPS53-211ENST00000571805 KIAA1210Q9ULL0 1709 aa30.35■■■□□ 2.45
VPS53-211ENST00000571805 ADGRL1O94910 1474 aa30.35■■■□□ 2.45
VPS53-211ENST00000571805 KIF3BO15066 747 aa30.34■■■□□ 2.45
VPS53-211ENST00000571805 EXOC6Q8TAG9 804 aa30.34■■■□□ 2.45
VPS53-211ENST00000571805 CDCA8Q53HL2 280 aa30.33■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms