RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 FYCO1Q9BQS8 1478 aa26.42■■□□□ 1.82
CLK3-223ENST00000568488 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.4■■□□□ 1.82
CLK3-223ENST00000568488 ZNF644Q9H582 1327 aaPredicted RBP26.39■■□□□ 1.82
CLK3-223ENST00000568488 POLR1AO95602 1720 aaPredicted RBP26.39■■□□□ 1.82
CLK3-223ENST00000568488 NEURL4Q96JN8 1562 aa26.39■■□□□ 1.82
CLK3-223ENST00000568488 THEMISQ8N1K5 641 aaPredicted RBP26.38■■□□□ 1.81
CLK3-223ENST00000568488 ADGBQ8N7X0 1667 aa26.38■■□□□ 1.81
CLK3-223ENST00000568488 KIF3BO15066 747 aa26.37■■□□□ 1.81
CLK3-223ENST00000568488 DHX29Q7Z478 1369 aaKnown RBP26.34■■□□□ 1.81
CLK3-223ENST00000568488 WASHC2CQ9Y4E1 1318 aa26.34■■□□□ 1.81
CLK3-223ENST00000568488 MTUS2Q5JR59 1369 aa26.33■■□□□ 1.8
CLK3-223ENST00000568488 VWDEQ8N2E2 1590 aa26.32■■□□□ 1.8
CLK3-223ENST00000568488 NPHP4O75161 1426 aaPredicted RBP26.31■■□□□ 1.8
CLK3-223ENST00000568488 PZPP20742 1482 aa26.3■■□□□ 1.8
CLK3-223ENST00000568488 CHIC1Q5VXU3 224 aa26.28■■□□□ 1.8
CLK3-223ENST00000568488 RTEL1-TNFRSF6BF6WH68 1400 aa26.28■■□□□ 1.8
CLK3-223ENST00000568488 MIA2Q96PC5 1412 aa26.28■■□□□ 1.8
CLK3-223ENST00000568488 ALKQ9UM73 1620 aa26.28■■□□□ 1.8
CLK3-223ENST00000568488 MBD5Q9P267 1494 aa26.27■■□□□ 1.8
CLK3-223ENST00000568488 FAM135AQ9P2D6 1515 aa26.26■■□□□ 1.79
CLK3-223ENST00000568488 UGGT1Q9NYU2 1555 aa26.25■■□□□ 1.79
CLK3-223ENST00000568488 KDM5DQ9BY66 1539 aa26.24■■□□□ 1.79
CLK3-223ENST00000568488 MED14O60244 1454 aa26.23■■□□□ 1.79
CLK3-223ENST00000568488 NLRP1Q9C000 1473 aa26.23■■□□□ 1.79
CLK3-223ENST00000568488 RGS17Q9UGC6 210 aaPredicted RBP26.21■■□□□ 1.79
CLK3-223ENST00000568488 LRRC7Q96NW7 1537 aa26.2■■□□□ 1.79
CLK3-223ENST00000568488 DEPDC5O75140 1603 aa26.19■■□□□ 1.78
CLK3-223ENST00000568488 TIAM1Q13009 1591 aa26.19■■□□□ 1.78
CLK3-223ENST00000568488 IQGAP1P46940 1657 aa26.17■■□□□ 1.78
CLK3-223ENST00000568488 STRCP1A6NGW2 1772 aa26.15■■□□□ 1.78
CLK3-223ENST00000568488 CCDC141Q6ZP82 1450 aa26.13■■□□□ 1.77
CLK3-223ENST00000568488 RNF17Q9BXT8 1623 aaKnown RBP26.13■■□□□ 1.77
CLK3-223ENST00000568488 RSPH4AQ5TD94 716 aa26.12■■□□□ 1.77
CLK3-223ENST00000568488 TSPY4P0CV99 314 aa26.1■■□□□ 1.77
CLK3-223ENST00000568488 TSPY10P0CW01 314 aa26.1■■□□□ 1.77
CLK3-223ENST00000568488 EHBP1L1Q8N3D4 1523 aa26.09■■□□□ 1.77
CLK3-223ENST00000568488 SYNMO15061 1565 aa26.07■■□□□ 1.76
CLK3-223ENST00000568488 CEP162Q5TB80 1403 aa26.07■■□□□ 1.76
CLK3-223ENST00000568488 CAMSAP2Q08AD1 1489 aa26.05■■□□□ 1.76
CLK3-223ENST00000568488 POTEAQ6S8J7 498 aa26.05■■□□□ 1.76
CLK3-223ENST00000568488 TXNDC2Q86VQ3 553 aa26.03■■□□□ 1.76
CLK3-223ENST00000568488 LTKP29376 864 aa26.01■■□□□ 1.75
CLK3-223ENST00000568488 ERVK-7P63135 1459 aa25.99■■□□□ 1.75
CLK3-223ENST00000568488 SCAF11Q99590 1463 aaKnown RBP25.99■■□□□ 1.75
CLK3-223ENST00000568488 ABCC3O15438 1527 aa25.98■■□□□ 1.75
CLK3-223ENST00000568488 ZC3H13Q5T200 1668 aaKnown RBP25.98■■□□□ 1.75
CLK3-223ENST00000568488 EID1Q9Y6B2 187 aa25.97■■□□□ 1.75
CLK3-223ENST00000568488 NCOA2Q15596 1464 aa25.97■■□□□ 1.75
CLK3-223ENST00000568488 CFAP65Q6ZU64 1925 aaKnown RBP25.95■■□□□ 1.74
CLK3-223ENST00000568488 FAM135BQ49AJ0 1406 aa25.95■■□□□ 1.74
CLK3-223ENST00000568488 UBR1Q8IWV7 1749 aa25.93■■□□□ 1.74
CLK3-223ENST00000568488 ARHGEF5Q12774 1597 aa25.91■■□□□ 1.74
CLK3-223ENST00000568488 XIRP1Q702N8 1843 aaKnown RBP25.9■■□□□ 1.74
CLK3-223ENST00000568488 STAG3Q9UJ98 1225 aa25.89■■□□□ 1.74
CLK3-223ENST00000568488 TMEM94Q12767 1356 aa25.88■■□□□ 1.73
CLK3-223ENST00000568488 RBM33Q96EV2 1170 aaKnown RBP25.88■■□□□ 1.73
CLK3-223ENST00000568488 ARHGAP23Q9P227 1491 aa25.87■■□□□ 1.73
CLK3-223ENST00000568488 PROSER2Q86WR7 435 aaPredicted RBP25.86■■□□□ 1.73
CLK3-223ENST00000568488 SLIT1O75093 1534 aa25.86■■□□□ 1.73
CLK3-223ENST00000568488 CEP152O94986 1710 aa25.85■■□□□ 1.73
CLK3-223ENST00000568488 KCNA6P17658 529 aa25.82■■□□□ 1.72
CLK3-223ENST00000568488 SLC26A8Q96RN1 970 aa25.82■■□□□ 1.72
CLK3-223ENST00000568488 MROH1Q8NDA8 1641 aa25.81■■□□□ 1.72
CLK3-223ENST00000568488 EIF2AK4Q9P2K8 1649 aaKnown RBP25.81■■□□□ 1.72
CLK3-223ENST00000568488 TMEM2Q9UHN6 1383 aa25.81■■□□□ 1.72
CLK3-223ENST00000568488 ROBO1Q9Y6N7 1651 aa25.8■■□□□ 1.72
CLK3-223ENST00000568488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.8■■□□□ 1.723e-9■■■■■ 27.4
CLK3-223ENST00000568488 MAST1Q9Y2H9 1570 aa25.79■■□□□ 1.72
CLK3-223ENST00000568488 SETD1AO15047 1707 aaKnown RBP25.78■■□□□ 1.72
CLK3-223ENST00000568488 BCANQ96GW7 911 aa25.76■■□□□ 1.71
CLK3-223ENST00000568488 ARHGAP31Q2M1Z3 1444 aa25.75■■□□□ 1.71
CLK3-223ENST00000568488 PIK3C2BO00750 1634 aa25.74■■□□□ 1.71
CLK3-223ENST00000568488 SLAIN2Q9P270 581 aa25.73■■□□□ 1.71
CLK3-223ENST00000568488 DUOX2Q9NRD8 1548 aa25.73■■□□□ 1.71
CLK3-223ENST00000568488 LRRC9Q6ZRR7 1453 aa25.72■■□□□ 1.71
CLK3-223ENST00000568488 JCADQ9P266 1359 aa25.72■■□□□ 1.71
CLK3-223ENST00000568488 IDI1Q13907 227 aa25.72■■□□□ 1.71
CLK3-223ENST00000568488 MAP3K1Q13233 1512 aa25.72■■□□□ 1.71
CLK3-223ENST00000568488 MSH6P52701 1360 aa25.71■■□□□ 1.71
CLK3-223ENST00000568488 RRP7BPQ9NSQ0 103 aa25.71■■□□□ 1.71
CLK3-223ENST00000568488 MEX3CQ5U5Q3 659 aaKnown RBP25.69■■□□□ 1.7
CLK3-223ENST00000568488 UPF1Q92900 1129 aaKnown RBP eCLIP25.69■■□□□ 1.7
CLK3-223ENST00000568488 TRIM52Q96A61 297 aa25.69■■□□□ 1.7
CLK3-223ENST00000568488 KIF15Q9NS87 1388 aa25.68■■□□□ 1.7
CLK3-223ENST00000568488 PRDM15P57071 1507 aaPredicted RBP25.68■■□□□ 1.7
CLK3-223ENST00000568488 EFCAB6Q5THR3 1501 aa25.68■■□□□ 1.7
CLK3-223ENST00000568488 PHLPP1O60346 1717 aa25.67■■□□□ 1.7
CLK3-223ENST00000568488 MYOM3Q5VTT5 1437 aa25.66■■□□□ 1.7
CLK3-223ENST00000568488 KANK1Q14678 1352 aa25.66■■□□□ 1.7
CLK3-223ENST00000568488 TET3O43151 1660 aa25.64■■□□□ 1.7
CLK3-223ENST00000568488 ZNF772Q68DY9 489 aaPredicted RBP25.63■■□□□ 1.69
CLK3-223ENST00000568488 NKTRP30414 1462 aaKnown RBP25.62■■□□□ 1.69
CLK3-223ENST00000568488 KANK4Q5T7N3 995 aaPredicted RBP25.62■■□□□ 1.69
CLK3-223ENST00000568488 ERBINQ96RT1 1412 aa25.61■■□□□ 1.69
CLK3-223ENST00000568488 C14orf37Q86TY3 774 aa25.59■■□□□ 1.69
CLK3-223ENST00000568488 SPATA31A6Q5VVP1 1343 aa25.59■■□□□ 1.69
CLK3-223ENST00000568488 NWD1Q149M9 1564 aa25.56■■□□□ 1.68
CLK3-223ENST00000568488 KDM5AP29375 1690 aaKnown RBP25.56■■□□□ 1.68
CLK3-223ENST00000568488 LRP6O75581 1613 aa25.55■■□□□ 1.68
CLK3-223ENST00000568488 RXRBP28702 533 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms