RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 STRCQ7RTU9 1775 aa19.39■□□□□ 0.69
SMAD3-208ENST00000558827 DAPK1P53355 1430 aa19.38■□□□□ 0.69
SMAD3-208ENST00000558827 NPATQ14207 1427 aa19.38■□□□□ 0.69
SMAD3-208ENST00000558827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.38■□□□□ 0.692e-8■■□□□ 12.3
SMAD3-208ENST00000558827 NCKAP5LQ9HCH0 1330 aa19.38■□□□□ 0.69
SMAD3-208ENST00000558827 KIF15Q9NS87 1388 aa19.37■□□□□ 0.69
SMAD3-208ENST00000558827 TCOF1Q13428 1488 aaKnown RBP19.35■□□□□ 0.69
SMAD3-208ENST00000558827 KDM5DQ9BY66 1539 aa19.34■□□□□ 0.69
SMAD3-208ENST00000558827 CROCC2H7BZ55 1655 aa19.33■□□□□ 0.69
SMAD3-208ENST00000558827 CFAP65Q6ZU64 1925 aaKnown RBP19.33■□□□□ 0.69
SMAD3-208ENST00000558827 DNMT1P26358 1616 aaKnown RBP19.33■□□□□ 0.69
SMAD3-208ENST00000558827 CAMSAP1Q5T5Y3 1602 aa19.33■□□□□ 0.69
SMAD3-208ENST00000558827 DMRT2Q9Y5R5 561 aa19.33■□□□□ 0.68
SMAD3-208ENST00000558827 MYO3AQ8NEV4 1616 aa19.33■□□□□ 0.68
SMAD3-208ENST00000558827 TNRQ92752 1358 aa19.32■□□□□ 0.68
SMAD3-208ENST00000558827 DUOX2Q9NRD8 1548 aa19.32■□□□□ 0.68
SMAD3-208ENST00000558827 ITGAEP38570 1179 aa19.31■□□□□ 0.68
SMAD3-208ENST00000558827 CERKQ8TCT0 537 aa19.3■□□□□ 0.68
SMAD3-208ENST00000558827 NCOA1Q15788 1441 aa19.3■□□□□ 0.68
SMAD3-208ENST00000558827 SHANK2Q9UPX8 1470 aa19.29■□□□□ 0.68
SMAD3-208ENST00000558827 CEP170BQ9Y4F5 1589 aaPredicted RBP19.29■□□□□ 0.68
SMAD3-208ENST00000558827 FBXO41Q8TF61 875 aa19.29■□□□□ 0.68
SMAD3-208ENST00000558827 ABCC3O15438 1527 aa19.29■□□□□ 0.68
SMAD3-208ENST00000558827 ANKRD30AQ9BXX3 1397 aa19.29■□□□□ 0.68
SMAD3-208ENST00000558827 PZPP20742 1482 aa19.28■□□□□ 0.68
SMAD3-208ENST00000558827 RNF17Q9BXT8 1623 aaKnown RBP19.28■□□□□ 0.68
SMAD3-208ENST00000558827 CEP152O94986 1710 aa19.28■□□□□ 0.68
SMAD3-208ENST00000558827 MROH1Q8NDA8 1641 aa19.27■□□□□ 0.68
SMAD3-208ENST00000558827 EIF2AK4Q9P2K8 1649 aaKnown RBP19.26■□□□□ 0.67
SMAD3-208ENST00000558827 A2ML1A8K2U0 1454 aa19.25■□□□□ 0.67
SMAD3-208ENST00000558827 PTPRTO14522 1441 aa19.24■□□□□ 0.67
SMAD3-208ENST00000558827 ERBINQ96RT1 1412 aa19.23■□□□□ 0.67
SMAD3-208ENST00000558827 ZNF142P52746 1687 aaPredicted RBP19.23■□□□□ 0.67
SMAD3-208ENST00000558827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.21■□□□□ 0.67
SMAD3-208ENST00000558827 FAM135AQ9P2D6 1515 aa19.21■□□□□ 0.67
SMAD3-208ENST00000558827 PKD2Q13563 968 aa19.2■□□□□ 0.66
SMAD3-208ENST00000558827 ZNF335Q9H4Z2 1342 aaPredicted RBP19.2■□□□□ 0.66
SMAD3-208ENST00000558827 KANK1Q14678 1352 aa19.19■□□□□ 0.66
SMAD3-208ENST00000558827 ERVK-7P63135 1459 aa19.19■□□□□ 0.66
SMAD3-208ENST00000558827 ZC3H13Q5T200 1668 aaKnown RBP19.18■□□□□ 0.66
SMAD3-208ENST00000558827 THEMISQ8N1K5 641 aaPredicted RBP19.18■□□□□ 0.66
SMAD3-208ENST00000558827 ADGRL2O95490 1459 aa19.17■□□□□ 0.66
SMAD3-208ENST00000558827 PLA2R1Q13018 1463 aa19.16■□□□□ 0.66
SMAD3-208ENST00000558827 ANKRD50Q9ULJ7 1429 aa19.16■□□□□ 0.66
SMAD3-208ENST00000558827 PRDM15P57071 1507 aaPredicted RBP19.15■□□□□ 0.66
SMAD3-208ENST00000558827 UGGT1Q9NYU2 1555 aa19.15■□□□□ 0.66
SMAD3-208ENST00000558827 ANKLE2Q86XL3 938 aa19.15■□□□□ 0.66
SMAD3-208ENST00000558827 NLRP1Q9C000 1473 aa19.15■□□□□ 0.66
SMAD3-208ENST00000558827 SPATA31D1Q6ZQQ2 1576 aa19.15■□□□□ 0.66
SMAD3-208ENST00000558827 DEPDC5O75140 1603 aa19.13■□□□□ 0.65
SMAD3-208ENST00000558827 LTBP4Q8N2S1 1624 aa19.12■□□□□ 0.65
SMAD3-208ENST00000558827 STAG3Q9UJ98 1225 aa19.1■□□□□ 0.65
SMAD3-208ENST00000558827 ARHGAP31Q2M1Z3 1444 aa19.09■□□□□ 0.65
SMAD3-208ENST00000558827 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
SMAD3-208ENST00000558827 NEURL4Q96JN8 1562 aa19.08■□□□□ 0.65
SMAD3-208ENST00000558827 IDI1Q13907 227 aa19.08■□□□□ 0.64
SMAD3-208ENST00000558827 POLR1AO95602 1720 aaPredicted RBP19.08■□□□□ 0.64
SMAD3-208ENST00000558827 VWDEQ8N2E2 1590 aa19.07■□□□□ 0.64
SMAD3-208ENST00000558827 LTKP29376 864 aa19.06■□□□□ 0.64
SMAD3-208ENST00000558827 TXNDC2Q86VQ3 553 aa19.06■□□□□ 0.64
SMAD3-208ENST00000558827 NPHP4O75161 1426 aaPredicted RBP19.06■□□□□ 0.64
SMAD3-208ENST00000558827 ROCK1Q13464 1354 aa19.05■□□□□ 0.64
SMAD3-208ENST00000558827 LMTK2Q8IWU2 1503 aa19.05■□□□□ 0.64
SMAD3-208ENST00000558827 UBR1Q8IWV7 1749 aa19.04■□□□□ 0.64
SMAD3-208ENST00000558827 PIK3C2BO00750 1634 aa19.03■□□□□ 0.64
SMAD3-208ENST00000558827 EFCAB6Q5THR3 1501 aa19.02■□□□□ 0.64
SMAD3-208ENST00000558827 NUP155O75694 1391 aa19.02■□□□□ 0.64
SMAD3-208ENST00000558827 SYNMO15061 1565 aa19.02■□□□□ 0.63
SMAD3-208ENST00000558827 UBAP1LF5GYI3 381 aa19.01■□□□□ 0.63
SMAD3-208ENST00000558827 CHGAP10645 457 aaKnown RBP19.01■□□□□ 0.63
SMAD3-208ENST00000558827 RRBP1Q9P2E9 1410 aaKnown RBP19■□□□□ 0.63
SMAD3-208ENST00000558827 EID1Q9Y6B2 187 aa18.99■□□□□ 0.63
SMAD3-208ENST00000558827 NOS1P29475 1434 aa18.99■□□□□ 0.63
SMAD3-208ENST00000558827 IQGAP1P46940 1657 aa18.98■□□□□ 0.63
SMAD3-208ENST00000558827 UNC13BO14795 1591 aa18.98■□□□□ 0.63
SMAD3-208ENST00000558827 MED14O60244 1454 aa18.97■□□□□ 0.63
SMAD3-208ENST00000558827 SCAF11Q99590 1463 aaKnown RBP18.97■□□□□ 0.63
SMAD3-208ENST00000558827 TMEM2Q9UHN6 1383 aa18.96■□□□□ 0.63
SMAD3-208ENST00000558827 TET3O43151 1660 aa18.96■□□□□ 0.63
SMAD3-208ENST00000558827 BCANQ96GW7 911 aa18.96■□□□□ 0.63
SMAD3-208ENST00000558827 SCAF1Q9H7N4 1312 aaKnown RBP18.96■□□□□ 0.63
SMAD3-208ENST00000558827 NUTM2DQ5VT03 806 aaPredicted RBP18.95■□□□□ 0.62
SMAD3-208ENST00000558827 SLC52A1Q9NWF4 448 aa18.95■□□□□ 0.62
SMAD3-208ENST00000558827 SLC26A8Q96RN1 970 aa18.94■□□□□ 0.62
SMAD3-208ENST00000558827 ARHGAP23Q9P227 1491 aa18.94■□□□□ 0.62
SMAD3-208ENST00000558827 E9PCH4 1651 aa18.93■□□□□ 0.62
SMAD3-208ENST00000558827 PIP4K2BP78356 416 aa18.93■□□□□ 0.62
SMAD3-208ENST00000558827 SLIT1O75093 1534 aa18.93■□□□□ 0.62
SMAD3-208ENST00000558827 GCC2Q8IWJ2 1684 aa18.92■□□□□ 0.62
SMAD3-208ENST00000558827 TRIM52Q96A61 297 aa18.92■□□□□ 0.62
SMAD3-208ENST00000558827 MYO5BQ9ULV0 1848 aa18.91■□□□□ 0.62
SMAD3-208ENST00000558827 STRCP1A6NGW2 1772 aa18.91■□□□□ 0.62
SMAD3-208ENST00000558827 IQSEC2Q5JU85 1478 aa18.9■□□□□ 0.62
SMAD3-208ENST00000558827 RPRD2Q5VT52 1461 aaKnown RBP18.9■□□□□ 0.62
SMAD3-208ENST00000558827 IQGAP3Q86VI3 1631 aa18.9■□□□□ 0.62
SMAD3-208ENST00000558827 NAIPQ13075 1403 aa18.9■□□□□ 0.62
SMAD3-208ENST00000558827 ADGRB3O60242 1522 aa18.9■□□□□ 0.62
SMAD3-208ENST00000558827 PPP1R15AO75807 674 aaPredicted RBP18.88■□□□□ 0.61
SMAD3-208ENST00000558827 RBM33Q96EV2 1170 aaKnown RBP18.88■□□□□ 0.61
SMAD3-208ENST00000558827 CPS1P31327 1500 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms