RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 CROCC2H7BZ55 1655 aa12.57□□□□□ -0.4
VTI1B-206ENST00000556461 KIF15Q9NS87 1388 aa12.57□□□□□ -0.4
VTI1B-206ENST00000556461 NPATQ14207 1427 aa12.57□□□□□ -0.4
VTI1B-206ENST00000556461 SETD1BQ9UPS6 1966 aaKnown RBP12.56□□□□□ -0.4
VTI1B-206ENST00000556461 FBXO31Q5XUX0 539 aaPredicted RBP12.56□□□□□ -0.4
VTI1B-206ENST00000556461 DUOX2Q9NRD8 1548 aa12.56□□□□□ -0.4
VTI1B-206ENST00000556461 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
VTI1B-206ENST00000556461 KDM5DQ9BY66 1539 aa12.55□□□□□ -0.4
VTI1B-206ENST00000556461 MROH1Q8NDA8 1641 aa12.55□□□□□ -0.4
VTI1B-206ENST00000556461 RNF17Q9BXT8 1623 aaKnown RBP12.55□□□□□ -0.4
VTI1B-206ENST00000556461 NCOA1Q15788 1441 aa12.54□□□□□ -0.4
VTI1B-206ENST00000556461 ABCC3O15438 1527 aa12.53□□□□□ -0.4
VTI1B-206ENST00000556461 EIF2AK4Q9P2K8 1649 aaKnown RBP12.52□□□□□ -0.4
VTI1B-206ENST00000556461 ANKRD30AQ9BXX3 1397 aa12.52□□□□□ -0.41
VTI1B-206ENST00000556461 ERBINQ96RT1 1412 aa12.52□□□□□ -0.41
VTI1B-206ENST00000556461 PZPP20742 1482 aa12.52□□□□□ -0.41
VTI1B-206ENST00000556461 STRCQ7RTU9 1775 aa12.51□□□□□ -0.41
VTI1B-206ENST00000556461 ADGRL2O95490 1459 aa12.51□□□□□ -0.41
VTI1B-206ENST00000556461 FAM135AQ9P2D6 1515 aa12.51□□□□□ -0.41
VTI1B-206ENST00000556461 MYO3AQ8NEV4 1616 aa12.51□□□□□ -0.41
VTI1B-206ENST00000556461 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.5□□□□□ -0.411e-8■■□□□ 14.2
VTI1B-206ENST00000556461 TNRQ92752 1358 aa12.5□□□□□ -0.41
VTI1B-206ENST00000556461 CAMSAP1Q5T5Y3 1602 aa12.48□□□□□ -0.41
VTI1B-206ENST00000556461 CEP170BQ9Y4F5 1589 aaPredicted RBP12.48□□□□□ -0.41
VTI1B-206ENST00000556461 ITGAEP38570 1179 aa12.48□□□□□ -0.41
VTI1B-206ENST00000556461 ILDR1Q86SU0 546 aaPredicted RBP12.48□□□□□ -0.41
VTI1B-206ENST00000556461 PRDM15P57071 1507 aaPredicted RBP12.47□□□□□ -0.41
VTI1B-206ENST00000556461 NCKAP5LQ9HCH0 1330 aa12.47□□□□□ -0.41
VTI1B-206ENST00000556461 CEP152O94986 1710 aa12.47□□□□□ -0.41
VTI1B-206ENST00000556461 A2ML1A8K2U0 1454 aa12.46□□□□□ -0.41
VTI1B-206ENST00000556461 ZNF142P52746 1687 aaPredicted RBP12.46□□□□□ -0.41
VTI1B-206ENST00000556461 DEPDC5O75140 1603 aa12.46□□□□□ -0.41
VTI1B-206ENST00000556461 ERVK-7P63135 1459 aa12.46□□□□□ -0.42
VTI1B-206ENST00000556461 ZC3H13Q5T200 1668 aaKnown RBP12.45□□□□□ -0.42
VTI1B-206ENST00000556461 ANKRD50Q9ULJ7 1429 aa12.45□□□□□ -0.42
VTI1B-206ENST00000556461 SPATA31D1Q6ZQQ2 1576 aa12.44□□□□□ -0.42
VTI1B-206ENST00000556461 PTPRTO14522 1441 aa12.44□□□□□ -0.42
VTI1B-206ENST00000556461 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.43□□□□□ -0.42
VTI1B-206ENST00000556461 VWDEQ8N2E2 1590 aa12.43□□□□□ -0.42
VTI1B-206ENST00000556461 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
VTI1B-206ENST00000556461 ARHGAP31Q2M1Z3 1444 aa12.43□□□□□ -0.42
VTI1B-206ENST00000556461 RRBP1Q9P2E9 1410 aaKnown RBP12.43□□□□□ -0.42
VTI1B-206ENST00000556461 ROCK1Q13464 1354 aa12.43□□□□□ -0.42
VTI1B-206ENST00000556461 PLA2R1Q13018 1463 aa12.42□□□□□ -0.42
VTI1B-206ENST00000556461 KANK1Q14678 1352 aa12.42□□□□□ -0.42
VTI1B-206ENST00000556461 LMTK2Q8IWU2 1503 aa12.42□□□□□ -0.42
VTI1B-206ENST00000556461 NLRP1Q9C000 1473 aa12.41□□□□□ -0.42
VTI1B-206ENST00000556461 PKD2Q13563 968 aa12.4□□□□□ -0.42
VTI1B-206ENST00000556461 CFAP65Q6ZU64 1925 aaKnown RBP12.4□□□□□ -0.42
VTI1B-206ENST00000556461 CERKQ8TCT0 537 aa12.39□□□□□ -0.43
VTI1B-206ENST00000556461 UGGT1Q9NYU2 1555 aa12.39□□□□□ -0.43
VTI1B-206ENST00000556461 EFCAB6Q5THR3 1501 aa12.37□□□□□ -0.43
VTI1B-206ENST00000556461 THEMISQ8N1K5 641 aaPredicted RBP12.37□□□□□ -0.43
VTI1B-206ENST00000556461 FBXO41Q8TF61 875 aa12.37□□□□□ -0.43
VTI1B-206ENST00000556461 NEURL4Q96JN8 1562 aa12.37□□□□□ -0.43
VTI1B-206ENST00000556461 LTBP4Q8N2S1 1624 aa12.37□□□□□ -0.43
VTI1B-206ENST00000556461 ZNF335Q9H4Z2 1342 aaPredicted RBP12.37□□□□□ -0.43
VTI1B-206ENST00000556461 UNC13BO14795 1591 aa12.36□□□□□ -0.43
VTI1B-206ENST00000556461 NOS1P29475 1434 aa12.36□□□□□ -0.43
VTI1B-206ENST00000556461 SYNMO15061 1565 aa12.35□□□□□ -0.43
VTI1B-206ENST00000556461 IDI1Q13907 227 aa12.35□□□□□ -0.43
VTI1B-206ENST00000556461 ANKLE2Q86XL3 938 aa12.35□□□□□ -0.43
VTI1B-206ENST00000556461 UBR1Q8IWV7 1749 aa12.34□□□□□ -0.43
VTI1B-206ENST00000556461 NUP155O75694 1391 aa12.33□□□□□ -0.44
VTI1B-206ENST00000556461 LTKP29376 864 aa12.33□□□□□ -0.44
VTI1B-206ENST00000556461 PIK3C2BO00750 1634 aa12.33□□□□□ -0.44
VTI1B-206ENST00000556461 NAIPQ13075 1403 aa12.32□□□□□ -0.44
VTI1B-206ENST00000556461 TET3O43151 1660 aa12.32□□□□□ -0.44
VTI1B-206ENST00000556461 POLR1AO95602 1720 aaPredicted RBP12.31□□□□□ -0.44
VTI1B-206ENST00000556461 NPHP4O75161 1426 aaPredicted RBP12.31□□□□□ -0.44
VTI1B-206ENST00000556461 MED14O60244 1454 aa12.31□□□□□ -0.44
VTI1B-206ENST00000556461 ARHGAP23Q9P227 1491 aa12.31□□□□□ -0.44
VTI1B-206ENST00000556461 IQGAP3Q86VI3 1631 aa12.3□□□□□ -0.44
VTI1B-206ENST00000556461 RPRD2Q5VT52 1461 aaKnown RBP12.3□□□□□ -0.44
VTI1B-206ENST00000556461 SLIT1O75093 1534 aa12.29□□□□□ -0.44
VTI1B-206ENST00000556461 TXNDC2Q86VQ3 553 aa12.29□□□□□ -0.44
VTI1B-206ENST00000556461 TMEM2Q9UHN6 1383 aa12.29□□□□□ -0.44
VTI1B-206ENST00000556461 E9PCH4 1651 aa12.29□□□□□ -0.44
VTI1B-206ENST00000556461 SCAF11Q99590 1463 aaKnown RBP12.28□□□□□ -0.44
VTI1B-206ENST00000556461 SLC52A1Q9NWF4 448 aa12.28□□□□□ -0.44
VTI1B-206ENST00000556461 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
VTI1B-206ENST00000556461 GCC2Q8IWJ2 1684 aa12.28□□□□□ -0.44
VTI1B-206ENST00000556461 HFM1A2PYH4 1435 aa12.28□□□□□ -0.44
VTI1B-206ENST00000556461 ADGRB3O60242 1522 aa12.27□□□□□ -0.45
VTI1B-206ENST00000556461 IQGAP1P46940 1657 aa12.26□□□□□ -0.45
VTI1B-206ENST00000556461 SENP3Q9H4L4 574 aaPredicted RBP12.24□□□□□ -0.45
VTI1B-206ENST00000556461 EID1Q9Y6B2 187 aa12.24□□□□□ -0.45
VTI1B-206ENST00000556461 KDM5AP29375 1690 aaKnown RBP12.23□□□□□ -0.45
VTI1B-206ENST00000556461 CHGAP10645 457 aaKnown RBP12.23□□□□□ -0.45
VTI1B-206ENST00000556461 TMEM131LA2VDJ0 1609 aa12.22□□□□□ -0.45
VTI1B-206ENST00000556461 IQSEC2Q5JU85 1478 aa12.22□□□□□ -0.45
VTI1B-206ENST00000556461 ZFYVE9O95405 1425 aa12.22□□□□□ -0.45
VTI1B-206ENST00000556461 TRIM52Q96A61 297 aa12.22□□□□□ -0.45
VTI1B-206ENST00000556461 STRCP1A6NGW2 1772 aa12.22□□□□□ -0.45
VTI1B-206ENST00000556461 RIMS2Q9UQ26 1411 aa12.21□□□□□ -0.45
VTI1B-206ENST00000556461 MYO5BQ9ULV0 1848 aa12.21□□□□□ -0.45
VTI1B-206ENST00000556461 NUTM2DQ5VT03 806 aaPredicted RBP12.21□□□□□ -0.45
VTI1B-206ENST00000556461 SLC26A8Q96RN1 970 aa12.21□□□□□ -0.45
VTI1B-206ENST00000556461 CPS1P31327 1500 aa12.21□□□□□ -0.46
VTI1B-206ENST00000556461 UBAP1LF5GYI3 381 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms