RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 NISCHQ9Y2I1 1504 aa19.97■□□□□ 0.79
VTI1B-206ENST00000556461 CCDC180Q9P1Z9 1646 aa17.72■□□□□ 0.43
VTI1B-206ENST00000556461 ABCC9O60706 1549 aa17.57■□□□□ 0.4
VTI1B-206ENST00000556461 DCAF8L2P0C7V8 631 aa16.77■□□□□ 0.28
VTI1B-206ENST00000556461 RB1CC1Q8TDY2 1594 aa16.77■□□□□ 0.27
VTI1B-206ENST00000556461 NACADO15069 1562 aa16.72■□□□□ 0.27
VTI1B-206ENST00000556461 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
VTI1B-206ENST00000556461 MYO15BQ96JP2 1530 aa16.57■□□□□ 0.24
VTI1B-206ENST00000556461 DCAF1Q9Y4B6 1507 aa16.47■□□□□ 0.23
VTI1B-206ENST00000556461 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
VTI1B-206ENST00000556461 UNC13AQ9UPW8 1703 aa16.39■□□□□ 0.21
VTI1B-206ENST00000556461 BICRAQ9NZM4 1560 aa16.34■□□□□ 0.21
VTI1B-206ENST00000556461 DNAJC5BQ9UF47 199 aa16.31■□□□□ 0.2
VTI1B-206ENST00000556461 SCRIBQ14160 1630 aa16.25■□□□□ 0.19
VTI1B-206ENST00000556461 SHROOM4Q9ULL8 1493 aa16.04■□□□□ 0.16
VTI1B-206ENST00000556461 EIF4G1Q04637 1599 aaKnown RBP15.88■□□□□ 0.13
VTI1B-206ENST00000556461 CC2D2AQ9P2K1 1620 aa15.86■□□□□ 0.13
VTI1B-206ENST00000556461 CECR2Q9BXF3 1484 aa15.78■□□□□ 0.12
VTI1B-206ENST00000556461 SMARCA4P51532 1647 aa15.5■□□□□ 0.07
VTI1B-206ENST00000556461 ATAD2BQ9ULI0 1458 aa15.48■□□□□ 0.07
VTI1B-206ENST00000556461 NCAPD3P42695 1498 aa15.46■□□□□ 0.07
VTI1B-206ENST00000556461 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
VTI1B-206ENST00000556461 MROH2BQ7Z745 1585 aa15.42■□□□□ 0.06
VTI1B-206ENST00000556461 SMARCA2P51531 1590 aa15.39■□□□□ 0.05
VTI1B-206ENST00000556461 HMGXB3Q12766 1538 aa15.35■□□□□ 0.05
VTI1B-206ENST00000556461 PEG3Q9GZU2 1588 aa15.34■□□□□ 0.05
VTI1B-206ENST00000556461 BAZ1BQ9UIG0 1483 aaKnown RBP15.32■□□□□ 0.04
VTI1B-206ENST00000556461 WIZO95785 1651 aa15.22■□□□□ 0.03
VTI1B-206ENST00000556461 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
VTI1B-206ENST00000556461 NESP48681 1621 aa15.19■□□□□ 0.02
VTI1B-206ENST00000556461 ERCC6Q03468 1493 aa15.1■□□□□ 0.01
VTI1B-206ENST00000556461 LAMC3Q9Y6N6 1575 aa15.03■□□□□ -0
VTI1B-206ENST00000556461 TOP2AP11388 1531 aaKnown RBP15.03■□□□□ -0
VTI1B-206ENST00000556461 CADPSQ9ULU8 1353 aa15.02■□□□□ -0
VTI1B-206ENST00000556461 CUX2O14529 1486 aa14.97□□□□□ -0.01
VTI1B-206ENST00000556461 PDS5BQ9NTI5 1447 aa14.96□□□□□ -0.01
VTI1B-206ENST00000556461 THOC2Q8NI27 1593 aaKnown RBP14.94□□□□□ -0.02
VTI1B-206ENST00000556461 KIF21AQ7Z4S6 1674 aa14.93□□□□□ -0.02
VTI1B-206ENST00000556461 CCDC88BA6NC98 1476 aa14.9□□□□□ -0.02
VTI1B-206ENST00000556461 CFTRP13569 1480 aa14.9□□□□□ -0.02
VTI1B-206ENST00000556461 FANCD2Q9BXW9 1451 aa14.85□□□□□ -0.03
VTI1B-206ENST00000556461 MRC2Q9UBG0 1479 aa14.83□□□□□ -0.03
VTI1B-206ENST00000556461 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
VTI1B-206ENST00000556461 WDR62O43379 1518 aa14.78□□□□□ -0.04
VTI1B-206ENST00000556461 SUPT5HO00267 1087 aaKnown RBP14.74□□□□□ -0.05
VTI1B-206ENST00000556461 URB2Q14146 1524 aaKnown RBP14.73□□□□□ -0.05
VTI1B-206ENST00000556461 DNAJC5Q9H3Z4 198 aa14.71□□□□□ -0.05
VTI1B-206ENST00000556461 PRDM2Q13029 1718 aa14.69□□□□□ -0.06
VTI1B-206ENST00000556461 TOPBP1Q92547 1522 aa14.6□□□□□ -0.07
VTI1B-206ENST00000556461 DNMBPQ6XZF7 1577 aa14.55□□□□□ -0.08
VTI1B-206ENST00000556461 ZNF608Q9ULD9 1512 aaPredicted RBP14.52□□□□□ -0.08
VTI1B-206ENST00000556461 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
VTI1B-206ENST00000556461 IFT140Q96RY7 1462 aa14.51□□□□□ -0.09
VTI1B-206ENST00000556461 POLA1P09884 1462 aaPredicted RBP14.47□□□□□ -0.09
VTI1B-206ENST00000556461 CUX1P39880 1505 aa14.46□□□□□ -0.09
VTI1B-206ENST00000556461 TARBP1Q13395 1621 aaKnown RBP14.44□□□□□ -0.1
VTI1B-206ENST00000556461 RAD54L2Q9Y4B4 1467 aa14.44□□□□□ -0.1
VTI1B-206ENST00000556461 AQRO60306 1485 aaKnown RBP eCLIP14.42□□□□□ -0.1
VTI1B-206ENST00000556461 FGD5Q6ZNL6 1462 aa14.42□□□□□ -0.1
VTI1B-206ENST00000556461 SOGA1O94964 1423 aa14.41□□□□□ -0.1
VTI1B-206ENST00000556461 EIF4G3O43432 1585 aaKnown RBP14.4□□□□□ -0.1
VTI1B-206ENST00000556461 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
VTI1B-206ENST00000556461 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
VTI1B-206ENST00000556461 WRNQ14191 1432 aaPredicted RBP eCLIP14.3□□□□□ -0.12
VTI1B-206ENST00000556461 SYNJ1O43426 1573 aa14.3□□□□□ -0.12
VTI1B-206ENST00000556461 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
VTI1B-206ENST00000556461 TOP2BQ02880 1626 aa14.26□□□□□ -0.13
VTI1B-206ENST00000556461 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
VTI1B-206ENST00000556461 SNAPC4Q5SXM2 1469 aa14.25□□□□□ -0.13
VTI1B-206ENST00000556461 FBLN2P98095 1184 aa14.25□□□□□ -0.13
VTI1B-206ENST00000556461 BIVM-ERCC5R4GMW8 1640 aa14.25□□□□□ -0.13
VTI1B-206ENST00000556461 CHD1O14646 1710 aa14.23□□□□□ -0.13
VTI1B-206ENST00000556461 GRIN2BQ13224 1484 aa14.23□□□□□ -0.13
VTI1B-206ENST00000556461 GAPVD1Q14C86 1478 aa14.23□□□□□ -0.13
VTI1B-206ENST00000556461 ABCA5Q8WWZ7 1642 aa14.2□□□□□ -0.14
VTI1B-206ENST00000556461 TRIM41Q8WV44 630 aa14.2□□□□□ -0.14
VTI1B-206ENST00000556461 MAGI1Q96QZ7 1491 aaPredicted RBP14.18□□□□□ -0.14
VTI1B-206ENST00000556461 PBRM1Q86U86 1689 aa14.17□□□□□ -0.14
VTI1B-206ENST00000556461 CHMP7Q8WUX9 453 aaPredicted RBP14.16□□□□□ -0.14
VTI1B-206ENST00000556461 SYNJ2O15056 1496 aa14.15□□□□□ -0.14
VTI1B-206ENST00000556461 RIMBP3CA6NJZ7 1639 aa14.14□□□□□ -0.15
VTI1B-206ENST00000556461 RIMBP3BA6NNM3 1639 aa14.14□□□□□ -0.15
VTI1B-206ENST00000556461 RIMBP3Q9UFD9 1639 aa14.14□□□□□ -0.15
VTI1B-206ENST00000556461 ARHGEF11O15085 1522 aa14.14□□□□□ -0.15
VTI1B-206ENST00000556461 CLASP1Q7Z460 1538 aa14.1□□□□□ -0.15
VTI1B-206ENST00000556461 ADAMTS12P58397 1594 aa14.09□□□□□ -0.15
VTI1B-206ENST00000556461 ERICH3Q5RHP9 1530 aa14.06□□□□□ -0.16
VTI1B-206ENST00000556461 GRIN2AQ12879 1464 aa14.06□□□□□ -0.16
VTI1B-206ENST00000556461 FHAD1B1AJZ9 1412 aa14.05□□□□□ -0.16
VTI1B-206ENST00000556461 CYB5RLQ6IPT4 315 aa14.04□□□□□ -0.16
VTI1B-206ENST00000556461 ARAP1Q96P48 1450 aa14.04□□□□□ -0.16
VTI1B-206ENST00000556461 CEP170Q5SW79 1584 aa14.01□□□□□ -0.17
VTI1B-206ENST00000556461 NUP160Q12769 1436 aa14.01□□□□□ -0.17
VTI1B-206ENST00000556461 IGF1RP08069 1367 aa14.01□□□□□ -0.17
VTI1B-206ENST00000556461 KIF27Q86VH2 1401 aa13.99□□□□□ -0.17
VTI1B-206ENST00000556461 ERCC6L2Q5T890 1561 aa13.95□□□□□ -0.18
VTI1B-206ENST00000556461 RUSC2Q8N2Y8 1516 aa13.92□□□□□ -0.18
VTI1B-206ENST00000556461 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
VTI1B-206ENST00000556461 SHROOM2Q13796 1616 aa13.89□□□□□ -0.19
VTI1B-206ENST00000556461 CUL7Q14999 1698 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms