RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CDC42BPBQ9Y5S2 1711 aa8.05□□□□□ -1.12
LIMA1-203ENST00000547825 PLB1Q6P1J6 1458 aa8.04□□□□□ -1.12
LIMA1-203ENST00000547825 CDC42BPAQ5VT25 1732 aa8.03□□□□□ -1.12
LIMA1-203ENST00000547825 ARAP3Q8WWN8 1544 aa8.03□□□□□ -1.12
LIMA1-203ENST00000547825 DAXXQ9UER7 740 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-203ENST00000547825 PCF11O94913 1555 aaKnown RBP8.03□□□□□ -1.12
LIMA1-203ENST00000547825 HECW1Q76N89 1606 aa8.03□□□□□ -1.12
LIMA1-203ENST00000547825 MAGI3Q5TCQ9 1506 aa8.02□□□□□ -1.13
LIMA1-203ENST00000547825 CARMIL2Q6F5E8 1435 aa8.02□□□□□ -1.13
LIMA1-203ENST00000547825 ATP10BO94823 1461 aa8.02□□□□□ -1.13
LIMA1-203ENST00000547825 TTC37Q6PGP7 1564 aa8.01□□□□□ -1.13
LIMA1-203ENST00000547825 PDAP1Q13442 181 aaKnown RBP8.01□□□□□ -1.13
LIMA1-203ENST00000547825 TSPOAP1O95153 1857 aa8.01□□□□□ -1.13
LIMA1-203ENST00000547825 MYO5CQ9NQX4 1742 aa8□□□□□ -1.13
LIMA1-203ENST00000547825 WDR7Q9Y4E6 1490 aa8□□□□□ -1.13
LIMA1-203ENST00000547825 PREX2Q70Z35 1606 aa8□□□□□ -1.13
LIMA1-203ENST00000547825 PSEN1P49768 467 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 E2F4Q16254 413 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 ZNF467Q7Z7K2 595 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-203ENST00000547825 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIMA1-203ENST00000547825 CFAP74Q9C0B2 1584 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 EFCAB3Q8N7B9 438 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 PHF8Q9UPP1 1060 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 ASXL2Q76L83 1435 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 NCKAP5LQ9HCH0 1330 aa7.99□□□□□ -1.13
LIMA1-203ENST00000547825 TESPA1A2RU30 521 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-203ENST00000547825 HOMEZQ8IX15 550 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 ARHGEF1Q92888 912 aaKnown RBP7.98□□□□□ -1.13
LIMA1-203ENST00000547825 PTPRGP23470 1445 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 KIF14Q15058 1648 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 ZMYM4Q5VZL5 1548 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 FBXO22Q8NEZ5 403 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 ITSN2Q9NZM3 1697 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 BCORL1Q5H9F3 1711 aa7.98□□□□□ -1.13
LIMA1-203ENST00000547825 NEFLP07196 543 aa7.97□□□□□ -1.13
LIMA1-203ENST00000547825 RBM42Q9BTD8 480 aaKnown RBP7.97□□□□□ -1.13
LIMA1-203ENST00000547825 CCDC61Q9Y6R9 512 aa7.97□□□□□ -1.13
LIMA1-203ENST00000547825 GPBP1L1Q9HC44 474 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-203ENST00000547825 CABP2Q9NPB3 220 aa7.96□□□□□ -1.14
LIMA1-203ENST00000547825 IFNL1Q8IU54 200 aa7.96□□□□□ -1.14
LIMA1-203ENST00000547825 CEP162Q5TB80 1403 aa7.96□□□□□ -1.14
LIMA1-203ENST00000547825 FYCO1Q9BQS8 1478 aa7.95□□□□□ -1.14
LIMA1-203ENST00000547825 KDM5CP41229 1560 aa7.95□□□□□ -1.14
LIMA1-203ENST00000547825 MAP3K1Q13233 1512 aa7.95□□□□□ -1.14
LIMA1-203ENST00000547825 ITGAEP38570 1179 aa7.94□□□□□ -1.14
LIMA1-203ENST00000547825 CYB5RLQ6IPT4 315 aa7.94□□□□□ -1.14
LIMA1-203ENST00000547825 REREQ9P2R6 1566 aa7.94□□□□□ -1.14
LIMA1-203ENST00000547825 COL17A1Q9UMD9 1497 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-203ENST00000547825 ZMYND10O75800 440 aa7.94□□□□□ -1.14
LIMA1-203ENST00000547825 CASKIN1Q8WXD9 1431 aa7.93□□□□□ -1.14
LIMA1-203ENST00000547825 KDM6BO15054 1643 aa7.93□□□□□ -1.14
LIMA1-203ENST00000547825 FARP1Q9Y4F1 1045 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-203ENST00000547825 LARP6Q9BRS8 491 aaKnown RBP7.93□□□□□ -1.14
LIMA1-203ENST00000547825 FHOD3Q2V2M9 1422 aa7.92□□□□□ -1.14
LIMA1-203ENST00000547825 ADAMTSL3P82987 1691 aa7.92□□□□□ -1.14
LIMA1-203ENST00000547825 CDK13Q14004 1512 aaKnown RBP7.92□□□□□ -1.14
LIMA1-203ENST00000547825 CROCC2H7BZ55 1655 aa7.92□□□□□ -1.14
LIMA1-203ENST00000547825 MAP3K13O43283 966 aa7.91□□□□□ -1.14
LIMA1-203ENST00000547825 RBM26Q5T8P6 1007 aaKnown RBP7.9□□□□□ -1.14
LIMA1-203ENST00000547825 ATP1B4Q9UN42 357 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-203ENST00000547825 CCDC18Q5T9S5 1454 aa7.9□□□□□ -1.14
LIMA1-203ENST00000547825 MS4A4AQ96JQ5 239 aa7.9□□□□□ -1.14
LIMA1-203ENST00000547825 ADGBQ8N7X0 1667 aa7.9□□□□□ -1.15
LIMA1-203ENST00000547825 MLLT3P42568 568 aaPredicted RBP7.9□□□□□ -1.15
LIMA1-203ENST00000547825 TIAM1Q13009 1591 aa7.89□□□□□ -1.15
LIMA1-203ENST00000547825 NEO1Q92859 1461 aa7.89□□□□□ -1.15
LIMA1-203ENST00000547825 INO80Q9ULG1 1556 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-203ENST00000547825 CNGB1Q14028 1251 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-203ENST00000547825 ARHGEF40Q8TER5 1519 aa7.89□□□□□ -1.15
LIMA1-203ENST00000547825 SAMD9LQ8IVG5 1584 aa7.89□□□□□ -1.15
LIMA1-203ENST00000547825 FMN1Q68DA7 1419 aa7.89□□□□□ -1.15
LIMA1-203ENST00000547825 KIDINS220Q9ULH0 1771 aa7.88□□□□□ -1.15
LIMA1-203ENST00000547825 ZNF579Q8NAF0 562 aaKnown RBP7.88□□□□□ -1.15
LIMA1-203ENST00000547825 IL27Q8NEV9 243 aa7.88□□□□□ -1.15
LIMA1-203ENST00000547825 ABCC1P33527 1531 aa7.88□□□□□ -1.15
LIMA1-203ENST00000547825 PLXNC1O60486 1568 aa7.88□□□□□ -1.15
LIMA1-203ENST00000547825 TEX14Q8IWB6 1497 aa7.86□□□□□ -1.15
LIMA1-203ENST00000547825 ZNF316A6NFI3 1004 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-203ENST00000547825 NLRP6P59044 892 aa7.86□□□□□ -1.15
LIMA1-203ENST00000547825 ABCA6Q8N139 1617 aa7.85□□□□□ -1.15
LIMA1-203ENST00000547825 MAST1Q9Y2H9 1570 aa7.85□□□□□ -1.15
LIMA1-203ENST00000547825 EHBP1L1Q8N3D4 1523 aa7.84□□□□□ -1.15
LIMA1-203ENST00000547825 BARGINQ6ZT62 677 aa7.84□□□□□ -1.15
LIMA1-203ENST00000547825 SUPT6HQ7KZ85 1726 aaKnown RBP7.84□□□□□ -1.15
LIMA1-203ENST00000547825 MROH2AA6NES4 1674 aa7.84□□□□□ -1.15
LIMA1-203ENST00000547825 CRISPLD2Q9H0B8 497 aa7.84□□□□□ -1.16
LIMA1-203ENST00000547825 ARHGEF12Q9NZN5 1544 aa7.83□□□□□ -1.16
LIMA1-203ENST00000547825 PRKAR2AP13861 404 aaKnown RBP7.83□□□□□ -1.16
LIMA1-203ENST00000547825 KIF12Q96FN5 646 aa7.83□□□□□ -1.16
LIMA1-203ENST00000547825 PHLDB1Q86UU1 1377 aa7.83□□□□□ -1.16
LIMA1-203ENST00000547825 DIP2CQ9Y2E4 1556 aa7.83□□□□□ -1.16
LIMA1-203ENST00000547825 DDX27Q96GQ7 796 aaKnown RBP7.83□□□□□ -1.16
LIMA1-203ENST00000547825 TROQ12816 1431 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-203ENST00000547825 ARHGEF5Q12774 1597 aa7.82□□□□□ -1.16
LIMA1-203ENST00000547825 PLCH2O75038 1416 aa7.82□□□□□ -1.16
LIMA1-203ENST00000547825 HECW2Q9P2P5 1572 aa7.82□□□□□ -1.16
LIMA1-203ENST00000547825 SOX12O15370 315 aa7.81□□□□□ -1.16
LIMA1-203ENST00000547825 MFSD10Q14728 455 aa7.81□□□□□ -1.16
LIMA1-203ENST00000547825 DEPDC5O75140 1603 aa7.8□□□□□ -1.16
LIMA1-203ENST00000547825 KDM4CQ9H3R0 1056 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms