RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 FAM212AQ96EL1 285 aa7.16□□□□□ -1.26
SNHG1-220ENST00000544550 GOLGA3Q08378 1498 aa7.16□□□□□ -1.26
SNHG1-220ENST00000544550 RNF25Q96BH1 459 aaPredicted RBP7.15□□□□□ -1.26
SNHG1-220ENST00000544550 BMP2KQ9NSY1 1161 aaPredicted RBP7.15□□□□□ -1.26
SNHG1-220ENST00000544550 RAPGEF2Q9Y4G8 1499 aa7.15□□□□□ -1.27
SNHG1-220ENST00000544550 FANCAO15360 1455 aa7.14□□□□□ -1.27
SNHG1-220ENST00000544550 ST18O60284 1047 aa7.14□□□□□ -1.27
SNHG1-220ENST00000544550 ABCA8O94911 1581 aa7.14□□□□□ -1.27
SNHG1-220ENST00000544550 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.14□□□□□ -1.27
SNHG1-220ENST00000544550 YEATS2Q9ULM3 1422 aa7.13□□□□□ -1.27
SNHG1-220ENST00000544550 POTEFA5A3E0 1075 aa7.13□□□□□ -1.27
SNHG1-220ENST00000544550 SNPHO15079 494 aa7.13□□□□□ -1.27
SNHG1-220ENST00000544550 CHRM1P11229 460 aaPredicted RBP7.13□□□□□ -1.27
SNHG1-220ENST00000544550 SLAIN1Q8ND83 568 aa7.13□□□□□ -1.27
SNHG1-220ENST00000544550 KIF12Q96FN5 646 aa7.13□□□□□ -1.27
SNHG1-220ENST00000544550 ARHGEF40Q8TER5 1519 aa7.12□□□□□ -1.27
SNHG1-220ENST00000544550 AKNAQ7Z591 1439 aa7.12□□□□□ -1.27
SNHG1-220ENST00000544550 CHGAP10645 457 aaKnown RBP7.12□□□□□ -1.27
SNHG1-220ENST00000544550 CCDC61Q9Y6R9 512 aa7.12□□□□□ -1.27
SNHG1-220ENST00000544550 RIMS1Q86UR5 1692 aaKnown RBP7.12□□□□□ -1.27
SNHG1-220ENST00000544550 ABCA9Q8IUA7 1624 aa7.12□□□□□ -1.27
SNHG1-220ENST00000544550 HAP1P54257 671 aaPredicted RBP7.11□□□□□ -1.27
SNHG1-220ENST00000544550 TSPYL2Q9H2G4 693 aaPredicted RBP7.11□□□□□ -1.27
SNHG1-220ENST00000544550 DENND4BO75064 1496 aaPredicted RBP7.11□□□□□ -1.27
SNHG1-220ENST00000544550 IQSEC2Q5JU85 1478 aa7.11□□□□□ -1.27
SNHG1-220ENST00000544550 RIOK3O14730 519 aaKnown RBP7.1□□□□□ -1.27
SNHG1-220ENST00000544550 HS6ST3Q8IZP7 471 aa7.1□□□□□ -1.27
SNHG1-220ENST00000544550 FRMPD1Q5SYB0 1578 aa7.1□□□□□ -1.27
SNHG1-220ENST00000544550 FHOD3Q2V2M9 1422 aa7.1□□□□□ -1.27
SNHG1-220ENST00000544550 PAXIP1Q6ZW49 1069 aaPredicted RBP7.09□□□□□ -1.27
SNHG1-220ENST00000544550 ATP10BO94823 1461 aa7.09□□□□□ -1.27
SNHG1-220ENST00000544550 MAGI2Q86UL8 1455 aa7.09□□□□□ -1.27
SNHG1-220ENST00000544550 EFCAB5A4FU69 1503 aa7.08□□□□□ -1.28
SNHG1-220ENST00000544550 TAOK2Q9UL54 1235 aa7.08□□□□□ -1.28
SNHG1-220ENST00000544550 PTPRTO14522 1441 aa7.08□□□□□ -1.28
SNHG1-220ENST00000544550 TTC37Q6PGP7 1564 aa7.08□□□□□ -1.28
SNHG1-220ENST00000544550 COLQQ9Y215 455 aaPredicted RBP7.07□□□□□ -1.28
SNHG1-220ENST00000544550 UHRF1BP1Q6BDS2 1440 aa7.07□□□□□ -1.28
SNHG1-220ENST00000544550 ZFYVE16Q7Z3T8 1539 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 ARID3CA6NKF2 412 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 TTLL13PA6NNM8 815 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 MLECQ14165 292 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 SPRYD3Q8NCJ5 442 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 CFAP44Q96MT7 982 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 SGIP1Q9BQI5 828 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 CFAP74Q9C0B2 1584 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 ZMYM4Q5VZL5 1548 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 PREX1Q8TCU6 1659 aa7.06□□□□□ -1.28
SNHG1-220ENST00000544550 VGFO15240 615 aaPredicted RBP7.05□□□□□ -1.28
SNHG1-220ENST00000544550 PYGBP11216 843 aa7.05□□□□□ -1.28
SNHG1-220ENST00000544550 VSIG10Q8N0Z9 540 aa7.05□□□□□ -1.28
SNHG1-220ENST00000544550 ARHGEF12Q9NZN5 1544 aa7.04□□□□□ -1.28
SNHG1-220ENST00000544550 C9orf84Q5VXU9 1444 aa7.03□□□□□ -1.28
SNHG1-220ENST00000544550 MAP3K13O43283 966 aa7.03□□□□□ -1.28
SNHG1-220ENST00000544550 CTTNBP2Q8WZ74 1663 aa7.03□□□□□ -1.28
SNHG1-220ENST00000544550 FER1L4A9Z1Z3 1794 aa7.03□□□□□ -1.28
SNHG1-220ENST00000544550 RICTORQ6R327 1708 aa7.02□□□□□ -1.29
SNHG1-220ENST00000544550 PLEKHD1A6NEE1 506 aa7.02□□□□□ -1.29
SNHG1-220ENST00000544550 PLCG2P16885 1265 aa7.02□□□□□ -1.29
SNHG1-220ENST00000544550 TRIM35Q9UPQ4 493 aa7.02□□□□□ -1.29
SNHG1-220ENST00000544550 LTBP4Q8N2S1 1624 aa7.01□□□□□ -1.29
SNHG1-220ENST00000544550 ATP10AO60312 1499 aa7.01□□□□□ -1.29
SNHG1-220ENST00000544550 UBAP1LF5GYI3 381 aa7.01□□□□□ -1.29
SNHG1-220ENST00000544550 CEBPAP49715 358 aaPredicted RBP7.01□□□□□ -1.29
SNHG1-220ENST00000544550 STRCQ7RTU9 1775 aa7□□□□□ -1.29
SNHG1-220ENST00000544550 STK25O00506 426 aa7□□□□□ -1.29
SNHG1-220ENST00000544550 NKX1-1Q15270 411 aaPredicted RBP7□□□□□ -1.29
SNHG1-220ENST00000544550 ESF1Q9H501 851 aaKnown RBP7□□□□□ -1.29
SNHG1-220ENST00000544550 HECW1Q76N89 1606 aa6.99□□□□□ -1.29
SNHG1-220ENST00000544550 RAPGEF6Q8TEU7 1601 aa6.99□□□□□ -1.29
SNHG1-220ENST00000544550 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-220ENST00000544550 P3H3Q8IVL6 736 aa6.99□□□□□ -1.29
SNHG1-220ENST00000544550 ZFP91Q96JP5 570 aaPredicted RBP6.99□□□□□ -1.29
SNHG1-220ENST00000544550 NCOA1Q15788 1441 aa6.99□□□□□ -1.29
SNHG1-220ENST00000544550 SCAPERQ9BY12 1400 aa6.99□□□□□ -1.29
SNHG1-220ENST00000544550 ZNF467Q7Z7K2 595 aaPredicted RBP6.98□□□□□ -1.29
SNHG1-220ENST00000544550 TRPC6Q9Y210 931 aa6.98□□□□□ -1.29
SNHG1-220ENST00000544550 KDM2AQ9Y2K7 1162 aa6.98□□□□□ -1.29
SNHG1-220ENST00000544550 TRAPPC8Q9Y2L5 1435 aa6.98□□□□□ -1.29
SNHG1-220ENST00000544550 SIGLEC1Q9BZZ2 1709 aa6.98□□□□□ -1.29
SNHG1-220ENST00000544550 NUP153P49790 1475 aaKnown RBP6.98□□□□□ -1.29
SNHG1-220ENST00000544550 PRXQ9BXM0 1461 aa6.98□□□□□ -1.29
SNHG1-220ENST00000544550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.97□□□□□ -1.29
SNHG1-220ENST00000544550 BCL11BQ9C0K0 894 aaPredicted RBP6.97□□□□□ -1.29
SNHG1-220ENST00000544550 TSHZ2Q9NRE2 1034 aa6.97□□□□□ -1.29
SNHG1-220ENST00000544550 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.97□□□□□ -1.29
SNHG1-220ENST00000544550 PLCH2O75038 1416 aa6.96□□□□□ -1.3
SNHG1-220ENST00000544550 GTPBP6O43824 516 aaPredicted RBP6.96□□□□□ -1.3
SNHG1-220ENST00000544550 STK24Q9Y6E0 443 aa6.96□□□□□ -1.3
SNHG1-220ENST00000544550 ZNF518AQ6AHZ1 1483 aa6.96□□□□□ -1.3
SNHG1-220ENST00000544550 MED1Q15648 1581 aaPredicted RBP6.95□□□□□ -1.3
SNHG1-220ENST00000544550 CNTLNQ9NXG0 1405 aa6.95□□□□□ -1.3
SNHG1-220ENST00000544550 EFCAB2Q5VUJ9 269 aa6.95□□□□□ -1.3
SNHG1-220ENST00000544550 SAMD9Q5K651 1589 aa6.95□□□□□ -1.3
SNHG1-220ENST00000544550 TOM1O60784 492 aa6.94□□□□□ -1.3
SNHG1-220ENST00000544550 MYT1LQ9UL68 1186 aa6.94□□□□□ -1.3
SNHG1-220ENST00000544550 PCDHB8Q9UN66 801 aa6.94□□□□□ -1.3
SNHG1-220ENST00000544550 PCDHB13Q9Y5F0 798 aa6.94□□□□□ -1.3
SNHG1-220ENST00000544550 ZNF335Q9H4Z2 1342 aaPredicted RBP6.94□□□□□ -1.3
SNHG1-220ENST00000544550 REREQ9P2R6 1566 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms