RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 KIAA1107Q9UPP5 1409 aa12.77□□□□□ -0.36
CTNNA1-243ENST00000540387 GSE1Q14687 1217 aa12.77□□□□□ -0.37
CTNNA1-243ENST00000540387 ARAP3Q8WWN8 1544 aa12.77□□□□□ -0.37
CTNNA1-243ENST00000540387 SETD5Q9C0A6 1442 aa12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 SYCP2Q9BX26 1530 aa12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 DNMT1P26358 1616 aaKnown RBP12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 RAB3GAP2Q9H2M9 1393 aa12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 DIP2BQ9P265 1576 aa12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 AKNAQ7Z591 1439 aa12.76□□□□□ -0.37
CTNNA1-243ENST00000540387 FAM43AQ8N2R8 423 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 PLEKHH2Q8IVE3 1493 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 SCAPERQ9BY12 1400 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 TRAPPC8Q9Y2L5 1435 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 PPP6R1Q9UPN7 881 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 GLI2P10070 1586 aa12.75□□□□□ -0.37
CTNNA1-243ENST00000540387 NAIPQ13075 1403 aa12.74□□□□□ -0.37
CTNNA1-243ENST00000540387 HFM1A2PYH4 1435 aa12.74□□□□□ -0.37
CTNNA1-243ENST00000540387 PPM1GO15355 546 aaPredicted RBP12.74□□□□□ -0.37
CTNNA1-243ENST00000540387 HIRIP3Q9BW71 556 aaPredicted RBP12.74□□□□□ -0.37
CTNNA1-243ENST00000540387 CCDC141Q6ZP82 1450 aa12.74□□□□□ -0.37
CTNNA1-243ENST00000540387 C9orf84Q5VXU9 1444 aa12.73□□□□□ -0.37
CTNNA1-243ENST00000540387 ADGRL1O94910 1474 aa12.73□□□□□ -0.37
CTNNA1-243ENST00000540387 NCOA1Q15788 1441 aa12.73□□□□□ -0.37
CTNNA1-243ENST00000540387 ADRA2BP18089 450 aa12.73□□□□□ -0.37
CTNNA1-243ENST00000540387 ROCK1Q13464 1354 aa12.72□□□□□ -0.37
CTNNA1-243ENST00000540387 ABCC1P33527 1531 aa12.72□□□□□ -0.37
CTNNA1-243ENST00000540387 TRHP20396 242 aaPredicted RBP12.72□□□□□ -0.37
CTNNA1-243ENST00000540387 ARHGEF5Q12774 1597 aa12.72□□□□□ -0.37
CTNNA1-243ENST00000540387 MAP3K4Q9Y6R4 1608 aa12.72□□□□□ -0.37
CTNNA1-243ENST00000540387 ANKRD30AQ9BXX3 1397 aa12.71□□□□□ -0.37
CTNNA1-243ENST00000540387 RAPGEF3O95398 923 aa12.71□□□□□ -0.38
CTNNA1-243ENST00000540387 SPAG9O60271 1321 aaKnown RBP12.7□□□□□ -0.38
CTNNA1-243ENST00000540387 NEO1Q92859 1461 aa12.69□□□□□ -0.38
CTNNA1-243ENST00000540387 SHANK2Q9UPX8 1470 aa12.69□□□□□ -0.38
CTNNA1-243ENST00000540387 FRAT1Q92837 279 aaPredicted RBP12.69□□□□□ -0.38
CTNNA1-243ENST00000540387 NPM2Q86SE8 214 aaKnown RBP12.68□□□□□ -0.38
CTNNA1-243ENST00000540387 ADGRL2O95490 1459 aa12.68□□□□□ -0.38
CTNNA1-243ENST00000540387 SIN3AQ96ST3 1273 aa12.68□□□□□ -0.38
CTNNA1-243ENST00000540387 KIF15Q9NS87 1388 aa12.67□□□□□ -0.38
CTNNA1-243ENST00000540387 TSPOAP1O95153 1857 aa12.67□□□□□ -0.38
CTNNA1-243ENST00000540387 KIF13AQ9H1H9 1805 aa12.66□□□□□ -0.38
CTNNA1-243ENST00000540387 CROCC2H7BZ55 1655 aa12.66□□□□□ -0.38
CTNNA1-243ENST00000540387 ANKRD50Q9ULJ7 1429 aa12.65□□□□□ -0.38
CTNNA1-243ENST00000540387 DENND4BO75064 1496 aaPredicted RBP12.65□□□□□ -0.38
CTNNA1-243ENST00000540387 KDM6BO15054 1643 aa12.65□□□□□ -0.38
CTNNA1-243ENST00000540387 POGZQ7Z3K3 1410 aa12.64□□□□□ -0.39
CTNNA1-243ENST00000540387 ZNF518AQ6AHZ1 1483 aa12.64□□□□□ -0.39
CTNNA1-243ENST00000540387 TEX14Q8IWB6 1497 aa12.64□□□□□ -0.39
CTNNA1-243ENST00000540387 CFAP74Q9C0B2 1584 aa12.64□□□□□ -0.39
CTNNA1-243ENST00000540387 PPRC1Q5VV67 1664 aaKnown RBP12.63□□□□□ -0.39
CTNNA1-243ENST00000540387 RTEL1-TNFRSF6BF6WH68 1400 aa12.63□□□□□ -0.39
CTNNA1-243ENST00000540387 HSP90AA2PQ14568 343 aaPredicted RBP12.63□□□□□ -0.39
CTNNA1-243ENST00000540387 MAST1Q9Y2H9 1570 aa12.62□□□□□ -0.39
CTNNA1-243ENST00000540387 A0A0U1RQG5 324 aaPredicted RBP12.62□□□□□ -0.39
CTNNA1-243ENST00000540387 NFKBIBQ15653 356 aa12.62□□□□□ -0.39
CTNNA1-243ENST00000540387 DCAF11Q8TEB1 546 aa12.62□□□□□ -0.39
CTNNA1-243ENST00000540387 RRP9O43818 475 aaKnown RBP12.61□□□□□ -0.39
CTNNA1-243ENST00000540387 COL17A1Q9UMD9 1497 aaPredicted RBP12.61□□□□□ -0.39
CTNNA1-243ENST00000540387 ADGBQ8N7X0 1667 aa12.61□□□□□ -0.39
CTNNA1-243ENST00000540387 GCC2Q8IWJ2 1684 aa12.61□□□□□ -0.39
CTNNA1-243ENST00000540387 ZFYVE16Q7Z3T8 1539 aa12.6□□□□□ -0.39
CTNNA1-243ENST00000540387 RBM10P98175 930 aaKnown RBP12.59□□□□□ -0.39
CTNNA1-243ENST00000540387 ATP7AQ04656 1500 aa12.59□□□□□ -0.39
CTNNA1-243ENST00000540387 MLH3Q9UHC1 1453 aa12.59□□□□□ -0.39
CTNNA1-243ENST00000540387 MPHOSPH9Q99550 1183 aa12.58□□□□□ -0.4
CTNNA1-243ENST00000540387 KDM5CP41229 1560 aa12.58□□□□□ -0.4
CTNNA1-243ENST00000540387 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.58□□□□□ -0.42e-7■■■□□ 14.7
CTNNA1-243ENST00000540387 RRAGDQ9NQL2 400 aaPredicted RBP12.58□□□□□ -0.4
CTNNA1-243ENST00000540387 ZBED9Q6R2W3 1325 aa12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 PLXNC1O60486 1568 aa12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 AAMPQ13685 434 aa12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 INO80Q9ULG1 1556 aaPredicted RBP12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 NUP155O75694 1391 aa12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 DHX29Q7Z478 1369 aaKnown RBP12.57□□□□□ -0.4
CTNNA1-243ENST00000540387 DUOX2Q9NRD8 1548 aa12.56□□□□□ -0.4
CTNNA1-243ENST00000540387 SLC4A1APQ9BWU0 796 aaKnown RBP12.56□□□□□ -0.4
CTNNA1-243ENST00000540387 KIDINS220Q9ULH0 1771 aa12.56□□□□□ -0.4
CTNNA1-243ENST00000540387 KIF3BO15066 747 aa12.56□□□□□ -0.4
CTNNA1-243ENST00000540387 YEATS2Q9ULM3 1422 aa12.56□□□□□ -0.4
CTNNA1-243ENST00000540387 FGD1P98174 961 aa12.55□□□□□ -0.4
CTNNA1-243ENST00000540387 HSP90AA1P07900 732 aaKnown RBP12.55□□□□□ -0.4
CTNNA1-243ENST00000540387 RICTORQ6R327 1708 aa12.55□□□□□ -0.4
CTNNA1-243ENST00000540387 PDE4AP27815 886 aa12.55□□□□□ -0.4
CTNNA1-243ENST00000540387 ERBINQ96RT1 1412 aa12.54□□□□□ -0.4
CTNNA1-243ENST00000540387 CCDC184Q52MB2 194 aa12.54□□□□□ -0.4
CTNNA1-243ENST00000540387 FRMPD1Q5SYB0 1578 aa12.54□□□□□ -0.4
CTNNA1-243ENST00000540387 HECW2Q9P2P5 1572 aa12.54□□□□□ -0.4
CTNNA1-243ENST00000540387 NAP1L5Q96NT1 182 aaPredicted RBP12.53□□□□□ -0.4
CTNNA1-243ENST00000540387 A2MP01023 1474 aa12.53□□□□□ -0.4
CTNNA1-243ENST00000540387 NCBP3Q53F19 620 aaKnown RBP12.52□□□□□ -0.41
CTNNA1-243ENST00000540387 BACH2Q9BYV9 841 aa12.52□□□□□ -0.41
CTNNA1-243ENST00000540387 TCERG1O14776 1098 aaKnown RBP12.52□□□□□ -0.41
CTNNA1-243ENST00000540387 PKD2Q13563 968 aa12.52□□□□□ -0.41
CTNNA1-243ENST00000540387 PZPP20742 1482 aa12.51□□□□□ -0.41
CTNNA1-243ENST00000540387 FAM9BQ8IZU0 186 aa12.51□□□□□ -0.41
CTNNA1-243ENST00000540387 RNF123Q5XPI4 1314 aa12.51□□□□□ -0.41
CTNNA1-243ENST00000540387 GGT6Q6P531 493 aa12.51□□□□□ -0.41
CTNNA1-243ENST00000540387 DDRGK1Q96HY6 314 aa12.5□□□□□ -0.41
CTNNA1-243ENST00000540387 PDE4CQ08493 712 aa12.5□□□□□ -0.41
CTNNA1-243ENST00000540387 MAGI2Q86UL8 1455 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms