RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 FTSJ3Q8IY81 847 aaKnown RBP6.84□□□□□ -1.32
PTPRD-213ENST00000537002 NINLQ9Y2I6 1382 aa6.83□□□□□ -1.32
PTPRD-213ENST00000537002 POLR1AO95602 1720 aaPredicted RBP6.83□□□□□ -1.32
PTPRD-213ENST00000537002 CHAF1AQ13111 956 aaPredicted RBP6.83□□□□□ -1.32
PTPRD-213ENST00000537002 CFTRP13569 1480 aa6.83□□□□□ -1.32
PTPRD-213ENST00000537002 LAMC3Q9Y6N6 1575 aa6.83□□□□□ -1.32
PTPRD-213ENST00000537002 DDX11L8A8MPP1 907 aa6.83□□□□□ -1.32
PTPRD-213ENST00000537002 TAF3Q5VWG9 929 aa6.83□□□□□ -1.32
PTPRD-213ENST00000537002 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.83□□□□□ -1.32
PTPRD-213ENST00000537002 SKOR2Q2VWA4 1001 aaPredicted RBP6.82□□□□□ -1.32
PTPRD-213ENST00000537002 GBP4Q96PP9 640 aa6.82□□□□□ -1.32
PTPRD-213ENST00000537002 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.82□□□□□ -1.32
PTPRD-213ENST00000537002 FOXD4L1Q9NU39 408 aa6.81□□□□□ -1.32
PTPRD-213ENST00000537002 FAM13BQ9NYF5 915 aa6.81□□□□□ -1.32
PTPRD-213ENST00000537002 PTPN23Q9H3S7 1636 aa6.81□□□□□ -1.32
PTPRD-213ENST00000537002 HECW1Q76N89 1606 aa6.81□□□□□ -1.32
PTPRD-213ENST00000537002 MFAP1P55081 439 aaKnown RBP6.81□□□□□ -1.32
PTPRD-213ENST00000537002 MYBBP1AQ9BQG0 1328 aaKnown RBP6.81□□□□□ -1.32
PTPRD-213ENST00000537002 NESP48681 1621 aa6.81□□□□□ -1.32
PTPRD-213ENST00000537002 CARMIL1Q5VZK9 1371 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 MYOM3Q5VTT5 1437 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 PLIN1O60240 522 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 NLRP13Q86W25 1043 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 KNSTRNQ9Y448 316 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 ANKRD30AQ9BXX3 1397 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 SCAPERQ9BY12 1400 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 CSPP1Q1MSJ5 1256 aa6.8□□□□□ -1.32
PTPRD-213ENST00000537002 HS1BP3Q53T59 392 aa6.79□□□□□ -1.32
PTPRD-213ENST00000537002 CASC1Q6TDU7 716 aa6.79□□□□□ -1.32
PTPRD-213ENST00000537002 LRPPRCP42704 1394 aaKnown RBP6.79□□□□□ -1.32
PTPRD-213ENST00000537002 TNNT3P45378 269 aaPredicted RBP6.79□□□□□ -1.32
PTPRD-213ENST00000537002 RGL3Q3MIN7 710 aa6.79□□□□□ -1.32
PTPRD-213ENST00000537002 CHGAP10645 457 aaKnown RBP6.79□□□□□ -1.32
PTPRD-213ENST00000537002 KIAA2012Q0VF49 1180 aa6.79□□□□□ -1.32
PTPRD-213ENST00000537002 FGD5Q6ZNL6 1462 aa6.78□□□□□ -1.32
PTPRD-213ENST00000537002 NAIPQ13075 1403 aa6.78□□□□□ -1.32
PTPRD-213ENST00000537002 PNISRQ8TF01 805 aaKnown RBP6.78□□□□□ -1.32
PTPRD-213ENST00000537002 GRIN2BQ13224 1484 aa6.78□□□□□ -1.32
PTPRD-213ENST00000537002 ESPNB1AK53 854 aa6.78□□□□□ -1.32
PTPRD-213ENST00000537002 FOXD1Q16676 465 aa6.78□□□□□ -1.32
PTPRD-213ENST00000537002 EHBP1L1Q8N3D4 1523 aa6.77□□□□□ -1.32
PTPRD-213ENST00000537002 FRAT2O75474 233 aaPredicted RBP6.77□□□□□ -1.33
PTPRD-213ENST00000537002 CFAP44Q96MT7 982 aa6.77□□□□□ -1.33
PTPRD-213ENST00000537002 CRBNQ96SW2 442 aa6.77□□□□□ -1.33
PTPRD-213ENST00000537002 RPRD2Q5VT52 1461 aaKnown RBP6.77□□□□□ -1.33
PTPRD-213ENST00000537002 MCM5P33992 734 aa6.77□□□□□ -1.33
PTPRD-213ENST00000537002 JPH4Q96JJ6 628 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 CGNL1Q0VF96 1302 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 KIF7Q2M1P5 1343 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 DRC7Q8IY82 874 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 SMAP1Q8IYB5 467 aaPredicted RBP6.76□□□□□ -1.33
PTPRD-213ENST00000537002 CIZ1Q9ULV3 898 aaPredicted RBP6.76□□□□□ -1.33
PTPRD-213ENST00000537002 ROCK1Q13464 1354 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 GCC2Q8IWJ2 1684 aa6.76□□□□□ -1.33
PTPRD-213ENST00000537002 RBM10P98175 930 aaKnown RBP6.75□□□□□ -1.33
PTPRD-213ENST00000537002 SUPT6HQ7KZ85 1726 aaKnown RBP6.75□□□□□ -1.33
PTPRD-213ENST00000537002 CHMP5Q9NZZ3 219 aa6.75□□□□□ -1.33
PTPRD-213ENST00000537002 ZNF771Q7L3S4 317 aaPredicted RBP6.75□□□□□ -1.33
PTPRD-213ENST00000537002 CCDC173Q0VFZ6 552 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 DNAJC5Q9H3Z4 198 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 GAPVD1Q14C86 1478 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 PTPRGP23470 1445 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 SPATA31E1Q6ZUB1 1445 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 FSD2A1L4K1 749 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 ZRSR1Q15695 479 aaKnown RBP6.74□□□□□ -1.33
PTPRD-213ENST00000537002 KIF20AO95235 890 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 UTP14CQ5TAP6 766 aaKnown RBP6.74□□□□□ -1.33
PTPRD-213ENST00000537002 PLPPR3Q6T4P5 718 aa6.74□□□□□ -1.33
PTPRD-213ENST00000537002 RWDD1Q9H446 243 aaPredicted RBP6.74□□□□□ -1.33
PTPRD-213ENST00000537002 R3HCC1Q9Y3T6 440 aaKnown RBP6.74□□□□□ -1.33
PTPRD-213ENST00000537002 GOLGA6L6A8MZA4 724 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 STAG3Q9UJ98 1225 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 CFAP53Q96M91 514 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 TCOF1Q13428 1488 aaKnown RBP6.73□□□□□ -1.33
PTPRD-213ENST00000537002 TSPY4P0CV99 314 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 TSPY10P0CW01 314 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 HMGN5P82970 282 aaKnown RBP6.73□□□□□ -1.33
PTPRD-213ENST00000537002 ZSCAN30Q86W11 494 aa6.73□□□□□ -1.33
PTPRD-213ENST00000537002 ARHGEF12Q9NZN5 1544 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 L3MBTL2Q969R5 705 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 IBTKQ9P2D0 1353 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 KIF21AQ7Z4S6 1674 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 KDM5BQ9UGL1 1544 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 DYNC1I1O14576 645 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 PCF11O94913 1555 aaKnown RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 DHX29Q7Z478 1369 aaKnown RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 USP47Q96K76 1375 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 FOXD4L5Q5VV16 416 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 KLHL34Q8N239 644 aa6.72□□□□□ -1.33
PTPRD-213ENST00000537002 FOXD4L4Q8WXT5 416 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 DDX49Q9Y6V7 483 aaKnown RBP6.72□□□□□ -1.33
PTPRD-213ENST00000537002 ITPRIPQ8IWB1 547 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 DCAF11Q8TEB1 546 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 SENP3Q9H4L4 574 aaPredicted RBP6.71□□□□□ -1.34
PTPRD-213ENST00000537002 FAM69CQ0P6D2 419 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 PMFBP1Q8TBY8 1022 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 CAMSAP2Q08AD1 1489 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 CCDC146Q8IYE0 955 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 TOPBP1Q92547 1522 aa6.71□□□□□ -1.34
PTPRD-213ENST00000537002 CLUAP1Q96AJ1 413 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms