RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 CC2D1BQ5T0F9 858 aaKnown RBP25.87■■□□□ 1.73
CAPN1-226ENST00000533820 EXOC6Q8TAG9 804 aa25.87■■□□□ 1.73
CAPN1-226ENST00000533820 ARID4BQ4LE39 1312 aaPredicted RBP25.86■■□□□ 1.73
CAPN1-226ENST00000533820 NPM2Q86SE8 214 aaKnown RBP25.86■■□□□ 1.73
CAPN1-226ENST00000533820 RALGAPBQ86X10 1494 aa25.86■■□□□ 1.73
CAPN1-226ENST00000533820 RNF123Q5XPI4 1314 aa25.85■■□□□ 1.73
CAPN1-226ENST00000533820 ATP10BO94823 1461 aa25.82■■□□□ 1.72
CAPN1-226ENST00000533820 ANP32AP39687 249 aaKnown RBP25.82■■□□□ 1.72
CAPN1-226ENST00000533820 CDCA7LQ96GN5 454 aa25.82■■□□□ 1.72
CAPN1-226ENST00000533820 EIF5BO60841 1220 aaKnown RBP25.82■■□□□ 1.72
CAPN1-226ENST00000533820 UHRF1BP1Q6BDS2 1440 aa25.81■■□□□ 1.72
CAPN1-226ENST00000533820 MAGI1Q96QZ7 1491 aaPredicted RBP25.81■■□□□ 1.72
CAPN1-226ENST00000533820 SYNJ2O15056 1496 aa25.81■■□□□ 1.72
CAPN1-226ENST00000533820 RALBP1Q15311 655 aa25.81■■□□□ 1.72
CAPN1-226ENST00000533820 CROCC2H7BZ55 1655 aa25.8■■□□□ 1.72
CAPN1-226ENST00000533820 RCAN3Q9UKA8 241 aa25.79■■□□□ 1.72
CAPN1-226ENST00000533820 RRP1P56182 461 aaKnown RBP25.79■■□□□ 1.72
CAPN1-226ENST00000533820 PLIN1O60240 522 aa25.78■■□□□ 1.72
CAPN1-226ENST00000533820 BRD4O60885 1362 aaPredicted RBP25.77■■□□□ 1.72
CAPN1-226ENST00000533820 CDC42BPAQ5VT25 1732 aa25.77■■□□□ 1.72
CAPN1-226ENST00000533820 LRPPRCP42704 1394 aaKnown RBP25.75■■□□□ 1.71
CAPN1-226ENST00000533820 NLRP13Q86W25 1043 aa25.75■■□□□ 1.71
CAPN1-226ENST00000533820 ABCC10Q5T3U5 1492 aa25.74■■□□□ 1.71
CAPN1-226ENST00000533820 SKAP1Q86WV1 359 aa25.74■■□□□ 1.71
CAPN1-226ENST00000533820 KTN1Q86UP2 1357 aaKnown RBP25.74■■□□□ 1.71
CAPN1-226ENST00000533820 ADCY10Q96PN6 1610 aa25.73■■□□□ 1.71
CAPN1-226ENST00000533820 IPO9Q96P70 1041 aaKnown RBP25.72■■□□□ 1.71
CAPN1-226ENST00000533820 ZBTB47Q9UFB7 747 aaPredicted RBP25.72■■□□□ 1.71
CAPN1-226ENST00000533820 CCDC144AA2RUR9 1427 aa25.72■■□□□ 1.71
CAPN1-226ENST00000533820 PANK3Q9H999 370 aa25.7■■□□□ 1.7
CAPN1-226ENST00000533820 ARHGEF12Q9NZN5 1544 aa25.69■■□□□ 1.7
CAPN1-226ENST00000533820 PKNOX2Q96KN3 472 aa25.68■■□□□ 1.7
CAPN1-226ENST00000533820 PER1O15534 1290 aaPredicted RBP25.66■■□□□ 1.7
CAPN1-226ENST00000533820 NUP160Q12769 1436 aa25.66■■□□□ 1.7
CAPN1-226ENST00000533820 PTPRGP23470 1445 aa25.66■■□□□ 1.7
CAPN1-226ENST00000533820 DISP3Q9P2K9 1392 aa25.66■■□□□ 1.7
CAPN1-226ENST00000533820 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
CAPN1-226ENST00000533820 FAM135AQ9P2D6 1515 aa25.65■■□□□ 1.7
CAPN1-226ENST00000533820 ABCA8O94911 1581 aa25.64■■□□□ 1.69
CAPN1-226ENST00000533820 PRAG1Q86YV5 1406 aa25.64■■□□□ 1.69
CAPN1-226ENST00000533820 PARD3Q8TEW0 1356 aa25.61■■□□□ 1.69
CAPN1-226ENST00000533820 TESK2Q96S53 571 aa25.6■■□□□ 1.69
CAPN1-226ENST00000533820 CCDC141Q6ZP82 1450 aa25.6■■□□□ 1.69
CAPN1-226ENST00000533820 PLEKHG5O94827 1062 aa25.59■■□□□ 1.69
CAPN1-226ENST00000533820 KDM5DQ9BY66 1539 aa25.58■■□□□ 1.69
CAPN1-226ENST00000533820 LAS1LQ9Y4W2 734 aaKnown RBP25.58■■□□□ 1.69
CAPN1-226ENST00000533820 PDE4AP27815 886 aa25.58■■□□□ 1.69
CAPN1-226ENST00000533820 RTL5Q5HYW3 569 aaPredicted RBP25.57■■□□□ 1.68
CAPN1-226ENST00000533820 CRBNQ96SW2 442 aa25.57■■□□□ 1.68
CAPN1-226ENST00000533820 PLA2R1Q13018 1463 aa25.56■■□□□ 1.68
CAPN1-226ENST00000533820 SAMD9LQ8IVG5 1584 aa25.55■■□□□ 1.68
CAPN1-226ENST00000533820 A2MP01023 1474 aa25.55■■□□□ 1.68
CAPN1-226ENST00000533820 TMF1P82094 1093 aa25.55■■□□□ 1.68
CAPN1-226ENST00000533820 SYCP2Q9BX26 1530 aa25.54■■□□□ 1.68
CAPN1-226ENST00000533820 C20orf194Q5TEA3 1177 aa25.54■■□□□ 1.68
CAPN1-226ENST00000533820 ADAMTS8Q9UP79 889 aa25.54■■□□□ 1.68
CAPN1-226ENST00000533820 PLEKHH2Q8IVE3 1493 aa25.54■■□□□ 1.68
CAPN1-226ENST00000533820 PDE3BQ13370 1112 aa25.53■■□□□ 1.68
CAPN1-226ENST00000533820 TCERG1O14776 1098 aaKnown RBP25.52■■□□□ 1.68
CAPN1-226ENST00000533820 ARHGAP5Q13017 1502 aa25.52■■□□□ 1.68
CAPN1-226ENST00000533820 ERBINQ96RT1 1412 aa25.5■■□□□ 1.67
CAPN1-226ENST00000533820 TRPM1Q7Z4N2 1603 aa25.49■■□□□ 1.67
CAPN1-226ENST00000533820 E9PCH4 1651 aa25.49■■□□□ 1.67
CAPN1-226ENST00000533820 RSPH4AQ5TD94 716 aa25.49■■□□□ 1.67
CAPN1-226ENST00000533820 CDC42BPBQ9Y5S2 1711 aa25.48■■□□□ 1.67
CAPN1-226ENST00000533820 ARHGEF5Q12774 1597 aa25.47■■□□□ 1.67
CAPN1-226ENST00000533820 BACH2Q9BYV9 841 aa25.46■■□□□ 1.67
CAPN1-226ENST00000533820 COL17A1Q9UMD9 1497 aaPredicted RBP25.46■■□□□ 1.67
CAPN1-226ENST00000533820 KNSTRNQ9Y448 316 aa25.45■■□□□ 1.67
CAPN1-226ENST00000533820 WDR43Q15061 677 aaKnown RBP eCLIP25.44■■□□□ 1.66
CAPN1-226ENST00000533820 GPRASP1Q5JY77 1395 aa25.42■■□□□ 1.66
CAPN1-226ENST00000533820 CCDC146Q8IYE0 955 aa25.42■■□□□ 1.66
CAPN1-226ENST00000533820 TTC37Q6PGP7 1564 aa25.4■■□□□ 1.66
CAPN1-226ENST00000533820 PPP2R1AP30153 589 aa25.39■■□□□ 1.65
CAPN1-226ENST00000533820 PREX2Q70Z35 1606 aa25.39■■□□□ 1.65
CAPN1-226ENST00000533820 NEFMP07197 916 aa25.38■■□□□ 1.65
CAPN1-226ENST00000533820 SLC4A3P48751 1232 aa25.37■■□□□ 1.65
CAPN1-226ENST00000533820 WASHC2CQ9Y4E1 1318 aa25.36■■□□□ 1.65
CAPN1-226ENST00000533820 PLEKHH1Q9ULM0 1364 aa25.35■■□□□ 1.65
CAPN1-226ENST00000533820 AFAP1Q8N556 730 aa25.34■■□□□ 1.65
CAPN1-226ENST00000533820 BLMP54132 1417 aaPredicted RBP25.34■■□□□ 1.65
CAPN1-226ENST00000533820 PRDM15P57071 1507 aaPredicted RBP25.34■■□□□ 1.65
CAPN1-226ENST00000533820 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.33■■□□□ 1.652e-8■■■■□ 22.3
CAPN1-226ENST00000533820 MS4A1P11836 297 aa25.33■■□□□ 1.65
CAPN1-226ENST00000533820 MAGI2Q86UL8 1455 aa25.33■■□□□ 1.64
CAPN1-226ENST00000533820 RGS3P49796 1198 aa25.3■■□□□ 1.64
CAPN1-226ENST00000533820 DUSP27Q5VZP5 1158 aa25.3■■□□□ 1.64
CAPN1-226ENST00000533820 MYO5CQ9NQX4 1742 aa25.29■■□□□ 1.64
CAPN1-226ENST00000533820 AMER1Q5JTC6 1135 aaPredicted RBP25.29■■□□□ 1.64
CAPN1-226ENST00000533820 EFCAB2Q5VUJ9 269 aa25.28■■□□□ 1.64
CAPN1-226ENST00000533820 GOLGA2Q08379 1002 aa25.28■■□□□ 1.64
CAPN1-226ENST00000533820 PODXL2Q9NZ53 605 aa25.28■■□□□ 1.64
CAPN1-226ENST00000533820 SLC24A1O60721 1099 aa25.27■■□□□ 1.64
CAPN1-226ENST00000533820 UNC13BO14795 1591 aa25.27■■□□□ 1.64
CAPN1-226ENST00000533820 APAF1O14727 1248 aa25.26■■□□□ 1.63
CAPN1-226ENST00000533820 ERCC6L2Q5T890 1561 aa25.26■■□□□ 1.63
CAPN1-226ENST00000533820 SPINK5Q9NQ38 1064 aaPredicted RBP25.26■■□□□ 1.63
CAPN1-226ENST00000533820 TRAPPC8Q9Y2L5 1435 aa25.25■■□□□ 1.63
CAPN1-226ENST00000533820 WDR7Q9Y4E6 1490 aa25.25■■□□□ 1.63
CAPN1-226ENST00000533820 ZMYM4Q5VZL5 1548 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms