RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MAP3K4Q9Y6R4 1608 aa11.44□□□□□ -0.58
CD44-228ENST00000528455 TEX14Q8IWB6 1497 aa11.44□□□□□ -0.58
CD44-228ENST00000528455 PPRC1Q5VV67 1664 aaKnown RBP11.43□□□□□ -0.58
CD44-228ENST00000528455 PLCB2Q00722 1185 aa11.42□□□□□ -0.58
CD44-228ENST00000528455 KANK4Q5T7N3 995 aaPredicted RBP11.42□□□□□ -0.58
CD44-228ENST00000528455 BMP2KQ9NSY1 1161 aaPredicted RBP11.42□□□□□ -0.58
CD44-228ENST00000528455 LRRIQ1Q96JM4 1722 aa11.42□□□□□ -0.58
CD44-228ENST00000528455 SP7Q8TDD2 431 aaPredicted RBP11.41□□□□□ -0.58
CD44-228ENST00000528455 CD109Q6YHK3 1445 aa11.41□□□□□ -0.58
CD44-228ENST00000528455 TIAM1Q13009 1591 aa11.41□□□□□ -0.58
CD44-228ENST00000528455 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
CD44-228ENST00000528455 CABP2Q9NPB3 220 aa11.4□□□□□ -0.58
CD44-228ENST00000528455 LRRC9Q6ZRR7 1453 aa11.39□□□□□ -0.59
CD44-228ENST00000528455 CFAP43Q8NDM7 1665 aa11.39□□□□□ -0.59
CD44-228ENST00000528455 MAGI3Q5TCQ9 1506 aa11.38□□□□□ -0.59
CD44-228ENST00000528455 MTUS2Q5JR59 1369 aa11.38□□□□□ -0.59
CD44-228ENST00000528455 CDK13Q14004 1512 aaKnown RBP11.37□□□□□ -0.59
CD44-228ENST00000528455 PAXIP1Q6ZW49 1069 aaPredicted RBP11.37□□□□□ -0.59
CD44-228ENST00000528455 EFCAB3Q8N7B9 438 aa11.37□□□□□ -0.59
CD44-228ENST00000528455 COL17A1Q9UMD9 1497 aaPredicted RBP11.37□□□□□ -0.59
CD44-228ENST00000528455 PPARGC1BQ86YN6 1023 aaKnown RBP11.36□□□□□ -0.59
CD44-228ENST00000528455 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
CD44-228ENST00000528455 GTPBP6O43824 516 aaPredicted RBP11.35□□□□□ -0.59
CD44-228ENST00000528455 CFAP44Q96MT7 982 aa11.35□□□□□ -0.59
CD44-228ENST00000528455 TROQ12816 1431 aaPredicted RBP11.35□□□□□ -0.59
CD44-228ENST00000528455 ATMINO43313 823 aaPredicted RBP11.34□□□□□ -0.59
CD44-228ENST00000528455 ASTLQ6HA08 431 aaPredicted RBP11.34□□□□□ -0.59
CD44-228ENST00000528455 ATN1P54259 1190 aaPredicted RBP11.33□□□□□ -0.6
CD44-228ENST00000528455 PHLDB1Q86UU1 1377 aa11.32□□□□□ -0.6
CD44-228ENST00000528455 MFRPQ9BY79 579 aa11.32□□□□□ -0.6
CD44-228ENST00000528455 TRIM35Q9UPQ4 493 aa11.32□□□□□ -0.6
CD44-228ENST00000528455 ABCA9Q8IUA7 1624 aa11.31□□□□□ -0.6
CD44-228ENST00000528455 EHBP1L1Q8N3D4 1523 aa11.31□□□□□ -0.6
CD44-228ENST00000528455 KDM4FA0A1W2PPD8 638 aa11.31□□□□□ -0.6
CD44-228ENST00000528455 SOX12O15370 315 aa11.31□□□□□ -0.6
CD44-228ENST00000528455 SUPT6HQ7KZ85 1726 aaKnown RBP11.3□□□□□ -0.6
CD44-228ENST00000528455 GOLGA2Q08379 1002 aa11.3□□□□□ -0.6
CD44-228ENST00000528455 ARAP3Q8WWN8 1544 aa11.3□□□□□ -0.6
CD44-228ENST00000528455 SLC24A1O60721 1099 aa11.29□□□□□ -0.6
CD44-228ENST00000528455 DCBLD2Q96PD2 775 aa11.29□□□□□ -0.6
CD44-228ENST00000528455 NCOA2Q15596 1464 aa11.28□□□□□ -0.6
CD44-228ENST00000528455 NEO1Q92859 1461 aa11.28□□□□□ -0.6
CD44-228ENST00000528455 TRIM26Q12899 539 aaPredicted RBP11.28□□□□□ -0.6
CD44-228ENST00000528455 FBXO22Q8NEZ5 403 aa11.28□□□□□ -0.6
CD44-228ENST00000528455 PHF8Q9UPP1 1060 aa11.28□□□□□ -0.6
CD44-228ENST00000528455 POTEIP0CG38 1075 aa11.27□□□□□ -0.61
CD44-228ENST00000528455 MKRN3Q13064 507 aaKnown RBP11.27□□□□□ -0.61
CD44-228ENST00000528455 RYDENQ9NUL5 291 aaKnown RBP11.27□□□□□ -0.61
CD44-228ENST00000528455 CCNB3Q8WWL7 1395 aa11.27□□□□□ -0.61
CD44-228ENST00000528455 PELP1Q8IZL8 1130 aaKnown RBP11.26□□□□□ -0.61
CD44-228ENST00000528455 KIF14Q15058 1648 aa11.25□□□□□ -0.61
CD44-228ENST00000528455 RAPGEF3O95398 923 aa11.25□□□□□ -0.61
CD44-228ENST00000528455 NLRP6P59044 892 aa11.25□□□□□ -0.61
CD44-228ENST00000528455 CFDP1Q9UEE9 299 aaPredicted RBP11.25□□□□□ -0.61
CD44-228ENST00000528455 MIA2Q96PC5 1412 aa11.25□□□□□ -0.61
CD44-228ENST00000528455 GPATCH8Q9UKJ3 1502 aaKnown RBP11.25□□□□□ -0.61
CD44-228ENST00000528455 PLCH2O75038 1416 aa11.24□□□□□ -0.61
CD44-228ENST00000528455 MYOM3Q5VTT5 1437 aa11.24□□□□□ -0.61
CD44-228ENST00000528455 ADGRL1O94910 1474 aa11.24□□□□□ -0.61
CD44-228ENST00000528455 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-228ENST00000528455 EFCAB2Q5VUJ9 269 aa11.23□□□□□ -0.61
CD44-228ENST00000528455 ILDR1Q86SU0 546 aaPredicted RBP11.23□□□□□ -0.61
CD44-228ENST00000528455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.23□□□□□ -0.61
CD44-228ENST00000528455 HAP1P54257 671 aaPredicted RBP11.22□□□□□ -0.61
CD44-228ENST00000528455 RSPH4AQ5TD94 716 aa11.22□□□□□ -0.61
CD44-228ENST00000528455 AKNAQ7Z591 1439 aa11.22□□□□□ -0.61
CD44-228ENST00000528455 MS4A4AQ96JQ5 239 aa11.22□□□□□ -0.61
CD44-228ENST00000528455 FANCAO15360 1455 aa11.21□□□□□ -0.61
CD44-228ENST00000528455 RRBP1Q9P2E9 1410 aaKnown RBP11.21□□□□□ -0.61
CD44-228ENST00000528455 IER5LQ5T953 404 aa11.21□□□□□ -0.61
CD44-228ENST00000528455 CDC42BPAQ5VT25 1732 aa11.21□□□□□ -0.62
CD44-228ENST00000528455 TTC37Q6PGP7 1564 aa11.2□□□□□ -0.62
CD44-228ENST00000528455 CFAP74Q9C0B2 1584 aa11.2□□□□□ -0.62
CD44-228ENST00000528455 DENND4BO75064 1496 aaPredicted RBP11.2□□□□□ -0.62
CD44-228ENST00000528455 FGD6Q6ZV73 1430 aa11.2□□□□□ -0.62
CD44-228ENST00000528455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.62
CD44-228ENST00000528455 CDC42BPBQ9Y5S2 1711 aa11.19□□□□□ -0.62
CD44-228ENST00000528455 PPP1R37O75864 691 aa11.19□□□□□ -0.62
CD44-228ENST00000528455 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
CD44-228ENST00000528455 ITSN2Q9NZM3 1697 aa11.19□□□□□ -0.62
CD44-228ENST00000528455 MYO5CQ9NQX4 1742 aa11.18□□□□□ -0.62
CD44-228ENST00000528455 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
CD44-228ENST00000528455 ZNF777Q9ULD5 760 aaPredicted RBP11.18□□□□□ -0.62
CD44-228ENST00000528455 FAM50AQ14320 339 aaKnown RBP11.17□□□□□ -0.62
CD44-228ENST00000528455 ARID4BQ4LE39 1312 aaPredicted RBP11.16□□□□□ -0.62
CD44-228ENST00000528455 ZNF644Q9H582 1327 aaPredicted RBP11.16□□□□□ -0.62
CD44-228ENST00000528455 TCOF1Q13428 1488 aaKnown RBP11.16□□□□□ -0.62
CD44-228ENST00000528455 SCAPERQ9BY12 1400 aa11.16□□□□□ -0.62
CD44-228ENST00000528455 PREX2Q70Z35 1606 aa11.16□□□□□ -0.62
CD44-228ENST00000528455 FRMPD1Q5SYB0 1578 aa11.16□□□□□ -0.62
CD44-228ENST00000528455 PDCD7Q8N8D1 485 aaKnown RBP11.15□□□□□ -0.62
CD44-228ENST00000528455 SLC39A7Q92504 469 aa11.15□□□□□ -0.62
CD44-228ENST00000528455 PTPN23Q9H3S7 1636 aa11.15□□□□□ -0.62
CD44-228ENST00000528455 KIAA1107Q9UPP5 1409 aa11.15□□□□□ -0.62
CD44-228ENST00000528455 RICTORQ6R327 1708 aa11.15□□□□□ -0.63
CD44-228ENST00000528455 PLEKHH2Q8IVE3 1493 aa11.14□□□□□ -0.63
CD44-228ENST00000528455 HNRNPMP52272 730 aaKnown RBP eCLIP11.14□□□□□ -0.63
CD44-228ENST00000528455 OCEL1Q9H607 264 aa11.14□□□□□ -0.63
CD44-228ENST00000528455 ARHGAP5Q13017 1502 aa11.14□□□□□ -0.63
CD44-228ENST00000528455 TSPY4P0CV99 314 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms