RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KDM5DQ9BY66 1539 aa31.95■■■□□ 2.71
VPS28-206ENST00000526734 DUOX2Q9NRD8 1548 aa31.95■■■□□ 2.7
VPS28-206ENST00000526734 RNF17Q9BXT8 1623 aaKnown RBP31.91■■■□□ 2.7
VPS28-206ENST00000526734 PTPRKQ15262 1439 aa31.91■■■□□ 2.7
VPS28-206ENST00000526734 KIF15Q9NS87 1388 aa31.89■■■□□ 2.7
VPS28-206ENST00000526734 ERBINQ96RT1 1412 aa31.87■■■□□ 2.69
VPS28-206ENST00000526734 WASHC2CQ9Y4E1 1318 aa31.87■■■□□ 2.69
VPS28-206ENST00000526734 ANKRD30AQ9BXX3 1397 aa31.85■■■□□ 2.69
VPS28-206ENST00000526734 PZPP20742 1482 aa31.84■■■□□ 2.69
VPS28-206ENST00000526734 ZC3H13Q5T200 1668 aaKnown RBP31.83■■■□□ 2.69
VPS28-206ENST00000526734 FAM50AQ14320 339 aaKnown RBP31.8■■■□□ 2.68
VPS28-206ENST00000526734 DMRT2Q9Y5R5 561 aa31.8■■■□□ 2.68
VPS28-206ENST00000526734 ADGRL2O95490 1459 aa31.79■■■□□ 2.68
VPS28-206ENST00000526734 MYO3AQ8NEV4 1616 aa31.79■■■□□ 2.68
VPS28-206ENST00000526734 RRP7BPQ9NSQ0 103 aa31.78■■■□□ 2.68
VPS28-206ENST00000526734 ZNF142P52746 1687 aaPredicted RBP31.78■■■□□ 2.68
VPS28-206ENST00000526734 ABCC3O15438 1527 aa31.77■■■□□ 2.68
VPS28-206ENST00000526734 NCOA1Q15788 1441 aa31.76■■■□□ 2.68
VPS28-206ENST00000526734 MROH1Q8NDA8 1641 aa31.76■■■□□ 2.67
VPS28-206ENST00000526734 PRDM15P57071 1507 aaPredicted RBP31.75■■■□□ 2.67
VPS28-206ENST00000526734 CEP170BQ9Y4F5 1589 aaPredicted RBP31.74■■■□□ 2.67
VPS28-206ENST00000526734 TNRQ92752 1358 aa31.73■■■□□ 2.67
VPS28-206ENST00000526734 CHIC2Q9UKJ5 165 aa31.72■■■□□ 2.67
VPS28-206ENST00000526734 A2ML1A8K2U0 1454 aa31.71■■■□□ 2.67
VPS28-206ENST00000526734 STRCQ7RTU9 1775 aa31.71■■■□□ 2.67
VPS28-206ENST00000526734 PTPRTO14522 1441 aa31.69■■■□□ 2.66
VPS28-206ENST00000526734 PLA2R1Q13018 1463 aa31.69■■■□□ 2.66
VPS28-206ENST00000526734 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.68■■■□□ 2.663e-6■■□□□ 12.6
VPS28-206ENST00000526734 DEPDC5O75140 1603 aa31.68■■■□□ 2.66
VPS28-206ENST00000526734 CAMSAP1Q5T5Y3 1602 aa31.68■■■□□ 2.66
VPS28-206ENST00000526734 KANK1Q14678 1352 aa31.67■■■□□ 2.66
VPS28-206ENST00000526734 FBXO31Q5XUX0 539 aaPredicted RBP31.66■■■□□ 2.66
VPS28-206ENST00000526734 NLRP1Q9C000 1473 aa31.65■■■□□ 2.66
VPS28-206ENST00000526734 ARHGAP31Q2M1Z3 1444 aa31.63■■■□□ 2.65
VPS28-206ENST00000526734 SPATA31D1Q6ZQQ2 1576 aa31.63■■■□□ 2.65
VPS28-206ENST00000526734 ROCK1Q13464 1354 aa31.61■■■□□ 2.65
VPS28-206ENST00000526734 CEP152O94986 1710 aa31.61■■■□□ 2.65
VPS28-206ENST00000526734 PKD2Q13563 968 aa31.6■■■□□ 2.65
VPS28-206ENST00000526734 ERVK-7P63135 1459 aa31.59■■■□□ 2.65
VPS28-206ENST00000526734 ANKRD50Q9ULJ7 1429 aa31.59■■■□□ 2.65
VPS28-206ENST00000526734 LMTK2Q8IWU2 1503 aa31.58■■■□□ 2.65
VPS28-206ENST00000526734 VWDEQ8N2E2 1590 aa31.56■■■□□ 2.64
VPS28-206ENST00000526734 PPARGC1BQ86YN6 1023 aaKnown RBP31.55■■■□□ 2.64
VPS28-206ENST00000526734 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.55■■■□□ 2.649e-9■■■□□ 15.1
VPS28-206ENST00000526734 ILDR1Q86SU0 546 aaPredicted RBP31.54■■■□□ 2.64
VPS28-206ENST00000526734 UGGT1Q9NYU2 1555 aa31.51■■■□□ 2.63
VPS28-206ENST00000526734 RRBP1Q9P2E9 1410 aaKnown RBP31.5■■■□□ 2.63
VPS28-206ENST00000526734 THEMISQ8N1K5 641 aaPredicted RBP31.5■■■□□ 2.63
VPS28-206ENST00000526734 FBXO41Q8TF61 875 aa31.5■■■□□ 2.63
VPS28-206ENST00000526734 NCKAP5LQ9HCH0 1330 aa31.49■■■□□ 2.63
VPS28-206ENST00000526734 CERKQ8TCT0 537 aa31.46■■■□□ 2.63
VPS28-206ENST00000526734 EFCAB6Q5THR3 1501 aa31.44■■■□□ 2.62
VPS28-206ENST00000526734 UNC13BO14795 1591 aa31.42■■■□□ 2.62
VPS28-206ENST00000526734 RPRD2Q5VT52 1461 aaKnown RBP31.4■■■□□ 2.62
VPS28-206ENST00000526734 ITGAEP38570 1179 aa31.4■■■□□ 2.62
VPS28-206ENST00000526734 ANKLE2Q86XL3 938 aa31.4■■■□□ 2.62
VPS28-206ENST00000526734 POLR1AO95602 1720 aaPredicted RBP31.4■■■□□ 2.62
VPS28-206ENST00000526734 NEURL4Q96JN8 1562 aa31.35■■■□□ 2.61
VPS28-206ENST00000526734 TET3O43151 1660 aa31.35■■■□□ 2.61
VPS28-206ENST00000526734 LTBP4Q8N2S1 1624 aa31.35■■■□□ 2.61
VPS28-206ENST00000526734 NOS1P29475 1434 aa31.34■■■□□ 2.61
VPS28-206ENST00000526734 MED14O60244 1454 aa31.33■■■□□ 2.61
VPS28-206ENST00000526734 UBR1Q8IWV7 1749 aa31.32■■■□□ 2.61
VPS28-206ENST00000526734 IQSEC2Q5JU85 1478 aa31.32■■■□□ 2.6
VPS28-206ENST00000526734 CFAP65Q6ZU64 1925 aaKnown RBP31.31■■■□□ 2.6
VPS28-206ENST00000526734 KDM5AP29375 1690 aaKnown RBP31.29■■■□□ 2.6
VPS28-206ENST00000526734 NPHP4O75161 1426 aaPredicted RBP31.29■■■□□ 2.6
VPS28-206ENST00000526734 GCC2Q8IWJ2 1684 aa31.29■■■□□ 2.6
VPS28-206ENST00000526734 IQGAP3Q86VI3 1631 aa31.28■■■□□ 2.6
VPS28-206ENST00000526734 SYNMO15061 1565 aa31.27■■■□□ 2.6
VPS28-206ENST00000526734 SLC52A1Q9NWF4 448 aa31.27■■■□□ 2.6
VPS28-206ENST00000526734 SLIT1O75093 1534 aa31.27■■■□□ 2.6
VPS28-206ENST00000526734 ARHGAP23Q9P227 1491 aa31.27■■■□□ 2.6
VPS28-206ENST00000526734 PIK3C2BO00750 1634 aa31.26■■■□□ 2.59
VPS28-206ENST00000526734 ZNF335Q9H4Z2 1342 aaPredicted RBP31.25■■■□□ 2.59
VPS28-206ENST00000526734 NUP155O75694 1391 aa31.24■■■□□ 2.59
VPS28-206ENST00000526734 SCAF11Q99590 1463 aaKnown RBP31.23■■■□□ 2.59
VPS28-206ENST00000526734 STAG3Q9UJ98 1225 aa31.23■■■□□ 2.59
VPS28-206ENST00000526734 IDI1Q13907 227 aa31.22■■■□□ 2.59
VPS28-206ENST00000526734 IQGAP1P46940 1657 aa31.21■■■□□ 2.59
VPS28-206ENST00000526734 ADGRB3O60242 1522 aa31.19■■■□□ 2.58
VPS28-206ENST00000526734 TMEM2Q9UHN6 1383 aa31.19■■■□□ 2.58
VPS28-206ENST00000526734 NAIPQ13075 1403 aa31.19■■■□□ 2.58
VPS28-206ENST00000526734 EID1Q9Y6B2 187 aa31.19■■■□□ 2.58
VPS28-206ENST00000526734 HFM1A2PYH4 1435 aa31.17■■■□□ 2.58
VPS28-206ENST00000526734 CPS1P31327 1500 aa31.17■■■□□ 2.58
VPS28-206ENST00000526734 TXNDC2Q86VQ3 553 aa31.15■■■□□ 2.58
VPS28-206ENST00000526734 E9PCH4 1651 aa31.15■■■□□ 2.58
VPS28-206ENST00000526734 LTKP29376 864 aa31.1■■■□□ 2.57
VPS28-206ENST00000526734 HDGFP51858 240 aaKnown RBP31.03■■■□□ 2.56
VPS28-206ENST00000526734 TMEM131LA2VDJ0 1609 aa31.02■■■□□ 2.56
VPS28-206ENST00000526734 ZFYVE9O95405 1425 aa30.98■■■□□ 2.55
VPS28-206ENST00000526734 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.96■■■□□ 2.55
VPS28-206ENST00000526734 RIMS2Q9UQ26 1411 aa30.96■■■□□ 2.55
VPS28-206ENST00000526734 SPHKAPQ2M3C7 1700 aa30.95■■■□□ 2.55
VPS28-206ENST00000526734 ACIN1Q9UKV3 1341 aaKnown RBP30.94■■■□□ 2.54
VPS28-206ENST00000526734 CHGAP10645 457 aaKnown RBP30.93■■■□□ 2.54
VPS28-206ENST00000526734 TRIM52Q96A61 297 aa30.93■■■□□ 2.54
VPS28-206ENST00000526734 PLEKHG1Q9ULL1 1385 aa30.92■■■□□ 2.54
VPS28-206ENST00000526734 UBAP1LF5GYI3 381 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms