RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NISCHQ9Y2I1 1504 aa50.64■■■■■ 5.7
VPS28-206ENST00000526734 CCDC180Q9P1Z9 1646 aa45.23■■■■■ 4.83
VPS28-206ENST00000526734 ABCC9O60706 1549 aa44.45■■■■■ 4.71
VPS28-206ENST00000526734 RB1CC1Q8TDY2 1594 aa42.73■■■■■ 4.43
VPS28-206ENST00000526734 NACADO15069 1562 aa42.61■■■■■ 4.41
VPS28-206ENST00000526734 MYO15BQ96JP2 1530 aa42.32■■■■■ 4.37
VPS28-206ENST00000526734 DCAF8L2P0C7V8 631 aa42.31■■■■■ 4.36
VPS28-206ENST00000526734 ZCCHC6Q5VYS8 1495 aaKnown RBP42.13■■■■■ 4.34
VPS28-206ENST00000526734 DCAF1Q9Y4B6 1507 aa41.99■■■■■ 4.31
VPS28-206ENST00000526734 UNC13AQ9UPW8 1703 aa41.58■■■■■ 4.25
VPS28-206ENST00000526734 PABPN1Q86U42 306 aaKnown RBP eCLIP41.42■■■■■ 4.22
VPS28-206ENST00000526734 BICRAQ9NZM4 1560 aa41.35■■■■■ 4.21
VPS28-206ENST00000526734 SHROOM4Q9ULL8 1493 aa41.12■■■■■ 4.17
VPS28-206ENST00000526734 SCRIBQ14160 1630 aa41.11■■■■■ 4.17
VPS28-206ENST00000526734 DNAJC5BQ9UF47 199 aa41■■■■■ 4.15
VPS28-206ENST00000526734 EIF4G1Q04637 1599 aaKnown RBP40.32■■■■■ 4.05
VPS28-206ENST00000526734 CC2D2AQ9P2K1 1620 aa40.2■■■■■ 4.03
VPS28-206ENST00000526734 CECR2Q9BXF3 1484 aa40.03■■■■■ 4
VPS28-206ENST00000526734 SMARCA4P51532 1647 aa39.35■■■■□ 3.89
VPS28-206ENST00000526734 BAZ1AQ9NRL2 1556 aaPredicted RBP39.32■■■■□ 3.88
VPS28-206ENST00000526734 NCAPD3P42695 1498 aa39.3■■■■□ 3.88
VPS28-206ENST00000526734 ATAD2BQ9ULI0 1458 aa39.24■■■■□ 3.87
VPS28-206ENST00000526734 SMARCA2P51531 1590 aa39.23■■■■□ 3.87
VPS28-206ENST00000526734 HMGXB3Q12766 1538 aa39.1■■■■□ 3.85
VPS28-206ENST00000526734 PEG3Q9GZU2 1588 aa39.04■■■■□ 3.84
VPS28-206ENST00000526734 MROH2BQ7Z745 1585 aa38.96■■■■□ 3.83
VPS28-206ENST00000526734 BAZ1BQ9UIG0 1483 aaKnown RBP38.91■■■■□ 3.82
VPS28-206ENST00000526734 WIZO95785 1651 aa38.49■■■■□ 3.75
VPS28-206ENST00000526734 RSF1Q96T23 1441 aaPredicted RBP38.43■■■■□ 3.74
VPS28-206ENST00000526734 ERCC6Q03468 1493 aa38.41■■■■□ 3.74
VPS28-206ENST00000526734 LAMC3Q9Y6N6 1575 aa38.33■■■■□ 3.73
VPS28-206ENST00000526734 NESP48681 1621 aa38.33■■■■□ 3.73
VPS28-206ENST00000526734 CUX2O14529 1486 aa38.19■■■■□ 3.7
VPS28-206ENST00000526734 TOP2AP11388 1531 aaKnown RBP38.17■■■■□ 3.7
VPS28-206ENST00000526734 CADPSQ9ULU8 1353 aa38.13■■■■□ 3.69
VPS28-206ENST00000526734 PDS5BQ9NTI5 1447 aa38.1■■■■□ 3.69
VPS28-206ENST00000526734 THOC2Q8NI27 1593 aaKnown RBP37.89■■■■□ 3.66
VPS28-206ENST00000526734 KIF21AQ7Z4S6 1674 aa37.87■■■■□ 3.65
VPS28-206ENST00000526734 CFTRP13569 1480 aa37.84■■■■□ 3.65
VPS28-206ENST00000526734 MRC2Q9UBG0 1479 aa37.7■■■■□ 3.63
VPS28-206ENST00000526734 CEP164Q9UPV0 1460 aa37.68■■■■□ 3.62
VPS28-206ENST00000526734 FANCD2Q9BXW9 1451 aa37.67■■■■□ 3.62
VPS28-206ENST00000526734 CCDC88BA6NC98 1476 aa37.66■■■■□ 3.62
VPS28-206ENST00000526734 WDR62O43379 1518 aa37.58■■■■□ 3.61
VPS28-206ENST00000526734 PRDM2Q13029 1718 aa37.47■■■■□ 3.59
VPS28-206ENST00000526734 DNAJC5Q9H3Z4 198 aa37.32■■■■□ 3.56
VPS28-206ENST00000526734 URB2Q14146 1524 aaKnown RBP37.28■■■■□ 3.56
VPS28-206ENST00000526734 SUPT5HO00267 1087 aaKnown RBP37.11■■■■□ 3.53
VPS28-206ENST00000526734 ABCC8Q09428 1581 aa37.11■■■■□ 3.53
VPS28-206ENST00000526734 TOPBP1Q92547 1522 aa37.02■■■■□ 3.52
VPS28-206ENST00000526734 DNMBPQ6XZF7 1577 aa36.98■■■■□ 3.51
VPS28-206ENST00000526734 IFT140Q96RY7 1462 aa36.93■■■■□ 3.5
VPS28-206ENST00000526734 POLA1P09884 1462 aaPredicted RBP36.69■■■■□ 3.46
VPS28-206ENST00000526734 ZNF608Q9ULD9 1512 aaPredicted RBP36.67■■■■□ 3.46
VPS28-206ENST00000526734 TARBP1Q13395 1621 aaKnown RBP36.63■■■■□ 3.45
VPS28-206ENST00000526734 CUX1P39880 1505 aa36.59■■■■□ 3.45
VPS28-206ENST00000526734 EIF4G3O43432 1585 aaKnown RBP36.56■■■■□ 3.44
VPS28-206ENST00000526734 FGD5Q6ZNL6 1462 aa36.54■■■■□ 3.44
VPS28-206ENST00000526734 SOGA1O94964 1423 aa36.52■■■■□ 3.44
VPS28-206ENST00000526734 OSCARQ8IYS5 282 aa36.48■■■■□ 3.43
VPS28-206ENST00000526734 WDR97A6NE52 1622 aa36.46■■■■□ 3.43
VPS28-206ENST00000526734 RAD54L2Q9Y4B4 1467 aa36.46■■■■□ 3.43
VPS28-206ENST00000526734 AQRO60306 1485 aaKnown RBP eCLIP36.43■■■■□ 3.421e-9■■■■■ 27.9
VPS28-206ENST00000526734 TDRD9Q8NDG6 1382 aaKnown RBP36.31■■■■□ 3.4
VPS28-206ENST00000526734 WRNQ14191 1432 aaPredicted RBP eCLIP36.28■■■■□ 3.4
VPS28-206ENST00000526734 TOP2BQ02880 1626 aa36.23■■■■□ 3.39
VPS28-206ENST00000526734 ABCA10Q8WWZ4 1543 aa36.22■■■■□ 3.39
VPS28-206ENST00000526734 BIVM-ERCC5R4GMW8 1640 aa36.22■■■■□ 3.39
VPS28-206ENST00000526734 GRIN2BQ13224 1484 aa36.18■■■■□ 3.38
VPS28-206ENST00000526734 MAGI1Q96QZ7 1491 aaPredicted RBP36.15■■■■□ 3.38
VPS28-206ENST00000526734 SYNJ1O43426 1573 aa36.14■■■■□ 3.38
VPS28-206ENST00000526734 SNAPC4Q5SXM2 1469 aa36.13■■■■□ 3.37
VPS28-206ENST00000526734 CHD1O14646 1710 aa36.11■■■■□ 3.37
VPS28-206ENST00000526734 GAPVD1Q14C86 1478 aa36.11■■■■□ 3.37
VPS28-206ENST00000526734 ABCA5Q8WWZ7 1642 aa36.07■■■■□ 3.36
VPS28-206ENST00000526734 FBLN2P98095 1184 aa36.05■■■■□ 3.36
VPS28-206ENST00000526734 PBRM1Q86U86 1689 aa36■■■■□ 3.35
VPS28-206ENST00000526734 SYNJ2O15056 1496 aa35.99■■■■□ 3.35
VPS28-206ENST00000526734 CHMP7Q8WUX9 453 aaPredicted RBP35.96■■■■□ 3.35
VPS28-206ENST00000526734 RIMBP3CA6NJZ7 1639 aa35.88■■■■□ 3.33
VPS28-206ENST00000526734 RIMBP3BA6NNM3 1639 aa35.88■■■■□ 3.33
VPS28-206ENST00000526734 RIMBP3Q9UFD9 1639 aa35.88■■■■□ 3.33
VPS28-206ENST00000526734 ARHGEF11O15085 1522 aa35.88■■■■□ 3.33
VPS28-206ENST00000526734 TRIM41Q8WV44 630 aa35.85■■■■□ 3.33
VPS28-206ENST00000526734 CLASP1Q7Z460 1538 aa35.8■■■■□ 3.32
VPS28-206ENST00000526734 ERICH3Q5RHP9 1530 aa35.79■■■■□ 3.32
VPS28-206ENST00000526734 ADAMTS12P58397 1594 aa35.76■■■■□ 3.31
VPS28-206ENST00000526734 FHAD1B1AJZ9 1412 aa35.72■■■■□ 3.31
VPS28-206ENST00000526734 GRIN2AQ12879 1464 aa35.69■■■■□ 3.3
VPS28-206ENST00000526734 NUP160Q12769 1436 aa35.57■■■■□ 3.29
VPS28-206ENST00000526734 KIF27Q86VH2 1401 aa35.57■■■■□ 3.29
VPS28-206ENST00000526734 ARAP1Q96P48 1450 aa35.55■■■■□ 3.28
VPS28-206ENST00000526734 CYB5RLQ6IPT4 315 aa35.5■■■■□ 3.27
VPS28-206ENST00000526734 CEP170Q5SW79 1584 aa35.48■■■■□ 3.27
VPS28-206ENST00000526734 IGF1RP08069 1367 aa35.41■■■■□ 3.26
VPS28-206ENST00000526734 CUL7Q14999 1698 aa35.4■■■■□ 3.26
VPS28-206ENST00000526734 SHROOM2Q13796 1616 aa35.32■■■■□ 3.24
VPS28-206ENST00000526734 RUSC2Q8N2Y8 1516 aa35.23■■■■□ 3.23
VPS28-206ENST00000526734 CARMIL1Q5VZK9 1371 aa35.21■■■■□ 3.23
VPS28-206ENST00000526734 ERCC6L2Q5T890 1561 aa35.16■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms