RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	PARD3	Q8TEW0	1356 aa		13.61	□□□□□ -0.23
SPIDR-225	ENST00000524141	NUP155	O75694	1391 aa		13.6	□□□□□ -0.23
SPIDR-225	ENST00000524141	NEFM	P07197	916 aa		13.6	□□□□□ -0.23
SPIDR-225	ENST00000524141	DDRGK1	Q96HY6	314 aa		13.6	□□□□□ -0.23
SPIDR-225	ENST00000524141	PLEKHH2	Q8IVE3	1493 aa		13.58	□□□□□ -0.24
SPIDR-225	ENST00000524141	SENP3-EIF4A1	A0A087X0R7	540 aa		13.58	□□□□□ -0.24
SPIDR-225	ENST00000524141	MRC2	Q9UBG0	1479 aa		13.57	□□□□□ -0.24
SPIDR-225	ENST00000524141	WASHC2C	Q9Y4E1	1318 aa		13.57	□□□□□ -0.24
SPIDR-225	ENST00000524141	CDC42BPA	Q5VT25	1732 aa		13.57	□□□□□ -0.24
SPIDR-225	ENST00000524141	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.57	□□□□□ -0.24
SPIDR-225	ENST00000524141	C9orf84	Q5VXU9	1444 aa		13.57	□□□□□ -0.24
SPIDR-225	ENST00000524141	PTPRG	P23470	1445 aa		13.56	□□□□□ -0.24
SPIDR-225	ENST00000524141	GRIN2A	Q12879	1464 aa		13.56	□□□□□ -0.24
SPIDR-225	ENST00000524141	IFT140	Q96RY7	1462 aa		13.56	□□□□□ -0.24
SPIDR-225	ENST00000524141	BLM	P54132	1417 aa	Predicted RBP	13.55	□□□□□ -0.24
SPIDR-225	ENST00000524141	LAS1L	Q9Y4W2	734 aa	Known RBP	13.55	□□□□□ -0.24
SPIDR-225	ENST00000524141	TRPM1	Q7Z4N2	1603 aa		13.55	□□□□□ -0.24
SPIDR-225	ENST00000524141	DCAF11	Q8TEB1	546 aa		13.54	□□□□□ -0.24
SPIDR-225	ENST00000524141	LAMC1	P11047	1609 aa		13.53	□□□□□ -0.24
SPIDR-225	ENST00000524141	KDM2A	Q9Y2K7	1162 aa		13.53	□□□□□ -0.24
SPIDR-225	ENST00000524141	PLB1	Q6P1J6	1458 aa		13.52	□□□□□ -0.24
SPIDR-225	ENST00000524141	PRAG1	Q86YV5	1406 aa		13.52	□□□□□ -0.24
SPIDR-225	ENST00000524141	SALL2	Q9Y467	1007 aa	Predicted RBP	13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	EIF4G3	O43432	1585 aa	Known RBP	13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	PER1	O15534	1290 aa	Predicted RBP	13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	TSPY4	P0CV99	314 aa		13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	TSPY10	P0CW01	314 aa		13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	GPRASP1	Q5JY77	1395 aa		13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	ARHGEF5	Q12774	1597 aa		13.51	□□□□□ -0.25
SPIDR-225	ENST00000524141	IL27	Q8NEV9	243 aa		13.5	□□□□□ -0.25
SPIDR-225	ENST00000524141	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.5	□□□□□ -0.25
SPIDR-225	ENST00000524141	CARMIL2	Q6F5E8	1435 aa		13.49	□□□□□ -0.25
SPIDR-225	ENST00000524141	ABCC10	Q5T3U5	1492 aa		13.49	□□□□□ -0.25
SPIDR-225	ENST00000524141	CDCA7L	Q96GN5	454 aa		13.49	□□□□□ -0.25
SPIDR-225	ENST00000524141	CCDC144A	A2RUR9	1427 aa		13.48	□□□□□ -0.25
SPIDR-225	ENST00000524141	FAM135A	Q9P2D6	1515 aa		13.48	□□□□□ -0.25
SPIDR-225	ENST00000524141	CRBN	Q96SW2	442 aa		13.48	□□□□□ -0.25
SPIDR-225	ENST00000524141	PRDM15	P57071	1507 aa	Predicted RBP	13.48	□□□□□ -0.25
SPIDR-225	ENST00000524141	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.48	□□□□□ -0.25
SPIDR-225	ENST00000524141	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.47	□□□□□ -0.25
SPIDR-225	ENST00000524141	PLEKHD1	A6NEE1	506 aa		13.47	□□□□□ -0.25
SPIDR-225	ENST00000524141	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.46	□□□□□ -0.25
SPIDR-225	ENST00000524141	DAXX	Q9UER7	740 aa	Predicted RBP	13.46	□□□□□ -0.25
SPIDR-225	ENST00000524141	PLIN1	O60240	522 aa		13.46	□□□□□ -0.26
SPIDR-225	ENST00000524141	GSE1	Q14687	1217 aa		13.45	□□□□□ -0.26
SPIDR-225	ENST00000524141	KDM2B	Q8NHM5	1336 aa		13.45	□□□□□ -0.26
SPIDR-225	ENST00000524141	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.45	□□□□□ -0.26
SPIDR-225	ENST00000524141	PRKCSH	P14314	528 aa	Predicted RBP	13.44	□□□□□ -0.26
SPIDR-225	ENST00000524141	ABCA8	O94911	1581 aa		13.44	□□□□□ -0.26
SPIDR-225	ENST00000524141	CCDC141	Q6ZP82	1450 aa		13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	ERBIN	Q96RT1	1412 aa		13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	CC2D1B	Q5T0F9	858 aa	Known RBP	13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	NUP160	Q12769	1436 aa		13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	NFKBIB	Q15653	356 aa		13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.43	□□□□□ -0.26
SPIDR-225	ENST00000524141	TMF1	P82094	1093 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	FAM161A	Q3B820	660 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	TESK2	Q96S53	571 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	DISP3	Q9P2K9	1392 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	RSPH4A	Q5TD94	716 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	A2M	P01023	1474 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	UNC13B	O14795	1591 aa		13.42	□□□□□ -0.26
SPIDR-225	ENST00000524141	SYNJ2	O15056	1496 aa		13.41	□□□□□ -0.26
SPIDR-225	ENST00000524141	PANK3	Q9H999	370 aa		13.41	□□□□□ -0.26
SPIDR-225	ENST00000524141	MYO5C	Q9NQX4	1742 aa		13.41	□□□□□ -0.26
SPIDR-225	ENST00000524141	RTN4	Q9NQC3	1192 aa	Known RBP	13.4	□□□□□ -0.26
SPIDR-225	ENST00000524141	ATP10B	O94823	1461 aa		13.4	□□□□□ -0.26
SPIDR-225	ENST00000524141	NBPF1	Q3BBV0	1214 aa		13.4	□□□□□ -0.26
SPIDR-225	ENST00000524141	CLASP1	Q7Z460	1538 aa		13.39	□□□□□ -0.27
SPIDR-225	ENST00000524141	DNAJC5B	Q9UF47	199 aa		13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	RNF17	Q9BXT8	1623 aa	Known RBP	13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.38	□□□□□ -0.27	3e-6	■■■■□ 25.9
SPIDR-225	ENST00000524141	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	PREX2	Q70Z35	1606 aa		13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	EIF3A	Q14152	1382 aa	Known RBP	13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	MAST1	Q9Y2H9	1570 aa		13.38	□□□□□ -0.27
SPIDR-225	ENST00000524141	C20orf194	Q5TEA3	1177 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	SAMD9L	Q8IVG5	1584 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	IQGAP3	Q86VI3	1631 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	WDR43	Q15061	677 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	DUSP27	Q5VZP5	1158 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	PLA2R1	Q13018	1463 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	RGL3	Q3MIN7	710 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	C8orf34	Q49A92	452 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	JPH4	Q96JJ6	628 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	ADAMTS8	Q9UP79	889 aa		13.37	□□□□□ -0.27
SPIDR-225	ENST00000524141	SKAP1	Q86WV1	359 aa		13.36	□□□□□ -0.27
SPIDR-225	ENST00000524141	ATP10A	O60312	1499 aa		13.36	□□□□□ -0.27
SPIDR-225	ENST00000524141	GOLGA2	Q08379	1002 aa		13.36	□□□□□ -0.27
SPIDR-225	ENST00000524141	CDC42BPB	Q9Y5S2	1711 aa		13.35	□□□□□ -0.27
SPIDR-225	ENST00000524141	ZNF521	Q96K83	1311 aa		13.35	□□□□□ -0.27
SPIDR-225	ENST00000524141	VIRMA	Q69YN4	1812 aa	Known RBP	13.35	□□□□□ -0.27
SPIDR-225	ENST00000524141	PLEKHH1	Q9ULM0	1364 aa		13.34	□□□□□ -0.27
SPIDR-225	ENST00000524141	FRAT1	Q92837	279 aa	Predicted RBP	13.34	□□□□□ -0.27
SPIDR-225	ENST00000524141	BRPF3	Q9ULD4	1205 aa		13.34	□□□□□ -0.27
SPIDR-225	ENST00000524141	KNSTRN	Q9Y448	316 aa		13.34	□□□□□ -0.27
SPIDR-225	ENST00000524141	PLXNC1	O60486	1568 aa		13.33	□□□□□ -0.27
SPIDR-225	ENST00000524141	WDR7	Q9Y4E6	1490 aa		13.33	□□□□□ -0.28
SPIDR-225	ENST00000524141	SYNM	O15061	1565 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms