RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-225ENST00000524141 NISCHQ9Y2I1 1504 aa20.33■□□□□ 0.84
SPIDR-225ENST00000524141 SHROOM4Q9ULL8 1493 aa17.46■□□□□ 0.38
SPIDR-225ENST00000524141 SUPT5HO00267 1087 aaKnown RBP17.29■□□□□ 0.36
SPIDR-225ENST00000524141 ZCCHC6Q5VYS8 1495 aaKnown RBP17.28■□□□□ 0.36
SPIDR-225ENST00000524141 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
SPIDR-225ENST00000524141 HRCP23327 699 aa17.14■□□□□ 0.33
SPIDR-225ENST00000524141 MYO15BQ96JP2 1530 aa17.03■□□□□ 0.32
SPIDR-225ENST00000524141 CHIC1Q5VXU3 224 aa17.02■□□□□ 0.32
SPIDR-225ENST00000524141 PCGF6Q9BYE7 350 aa16.83■□□□□ 0.28
SPIDR-225ENST00000524141 DCAF1Q9Y4B6 1507 aa16.8■□□□□ 0.28
SPIDR-225ENST00000524141 DCAF8L2P0C7V8 631 aa16.62■□□□□ 0.25
SPIDR-225ENST00000524141 PPARGC1BQ86YN6 1023 aaKnown RBP16.59■□□□□ 0.25
SPIDR-225ENST00000524141 TRIM26Q12899 539 aaPredicted RBP16.51■□□□□ 0.23
SPIDR-225ENST00000524141 LOC105371045A0A1W2PR82 267 aa16.46■□□□□ 0.23
SPIDR-225ENST00000524141 ABCC9O60706 1549 aa16.39■□□□□ 0.21
SPIDR-225ENST00000524141 ZEB1P37275 1124 aaPredicted RBP16.38■□□□□ 0.21
SPIDR-225ENST00000524141 PELP1Q8IZL8 1130 aaKnown RBP16.25■□□□□ 0.19
SPIDR-225ENST00000524141 RSF1Q96T23 1441 aaPredicted RBP16.19■□□□□ 0.18
SPIDR-225ENST00000524141 TRIM41Q8WV44 630 aa16.14■□□□□ 0.17
SPIDR-225ENST00000524141 RB1CC1Q8TDY2 1594 aa16.13■□□□□ 0.17
SPIDR-225ENST00000524141 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
SPIDR-225ENST00000524141 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.14
SPIDR-225ENST00000524141 FAM9AQ8IZU1 332 aaPredicted RBP15.94■□□□□ 0.14
SPIDR-225ENST00000524141 NACADO15069 1562 aa15.8■□□□□ 0.12
SPIDR-225ENST00000524141 MROH2BQ7Z745 1585 aa15.78■□□□□ 0.12
SPIDR-225ENST00000524141 CECR2Q9BXF3 1484 aa15.76■□□□□ 0.11
SPIDR-225ENST00000524141 ACIN1Q9UKV3 1341 aaKnown RBP15.74■□□□□ 0.11
SPIDR-225ENST00000524141 CCER1Q8TC90 406 aaPredicted RBP15.74■□□□□ 0.11
SPIDR-225ENST00000524141 EHMT2Q96KQ7 1210 aa15.73■□□□□ 0.11
SPIDR-225ENST00000524141 BAZ1AQ9NRL2 1556 aaPredicted RBP15.73■□□□□ 0.11
SPIDR-225ENST00000524141 WIZO95785 1651 aa15.72■□□□□ 0.11
SPIDR-225ENST00000524141 EIF4G1Q04637 1599 aaKnown RBP15.7■□□□□ 0.1
SPIDR-225ENST00000524141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
SPIDR-225ENST00000524141 CENPBP07199 599 aaPredicted RBP15.67■□□□□ 0.1
SPIDR-225ENST00000524141 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
SPIDR-225ENST00000524141 NEUROD1Q13562 356 aa15.63■□□□□ 0.09
SPIDR-225ENST00000524141 DIEXFQ68CQ4 756 aaKnown RBP15.63■□□□□ 0.09
SPIDR-225ENST00000524141 MYT1Q01538 1121 aa15.59■□□□□ 0.09
SPIDR-225ENST00000524141 CEP162Q5TB80 1403 aa15.54■□□□□ 0.08
SPIDR-225ENST00000524141 GTF3C3Q9Y5Q9 886 aa15.53■□□□□ 0.08
SPIDR-225ENST00000524141 TOP2AP11388 1531 aaKnown RBP15.53■□□□□ 0.08
SPIDR-225ENST00000524141 TNIKQ9UKE5 1360 aa15.51■□□□□ 0.07
SPIDR-225ENST00000524141 EEA1Q15075 1411 aa15.51■□□□□ 0.07
SPIDR-225ENST00000524141 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
SPIDR-225ENST00000524141 ABCC8Q09428 1581 aa15.47■□□□□ 0.07
SPIDR-225ENST00000524141 ZNF316A6NFI3 1004 aaPredicted RBP15.43■□□□□ 0.06
SPIDR-225ENST00000524141 SMARCA2P51531 1590 aa15.43■□□□□ 0.06
SPIDR-225ENST00000524141 SMARCA4P51532 1647 aa15.42■□□□□ 0.06
SPIDR-225ENST00000524141 SOGA1O94964 1423 aa15.39■□□□□ 0.05
SPIDR-225ENST00000524141 GOLGA3Q08378 1498 aa15.37■□□□□ 0.05
SPIDR-225ENST00000524141 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
SPIDR-225ENST00000524141 TTBK1Q5TCY1 1321 aaPredicted RBP15.35■□□□□ 0.05
SPIDR-225ENST00000524141 UBTFP17480 764 aaKnown RBP15.32■□□□□ 0.04
SPIDR-225ENST00000524141 RUSC2Q8N2Y8 1516 aa15.26■□□□□ 0.03
SPIDR-225ENST00000524141 CEP164Q9UPV0 1460 aa15.26■□□□□ 0.03
SPIDR-225ENST00000524141 KIF21BO75037 1637 aa15.26■□□□□ 0.03
SPIDR-225ENST00000524141 UNC13AQ9UPW8 1703 aa15.21■□□□□ 0.03
SPIDR-225ENST00000524141 YTHDC1Q96MU7 727 aaKnown RBP15.21■□□□□ 0.03
SPIDR-225ENST00000524141 MIER1Q8N108 512 aa15.19■□□□□ 0.02
SPIDR-225ENST00000524141 VPS8Q8N3P4 1428 aa15.18■□□□□ 0.02
SPIDR-225ENST00000524141 CLIP1P30622 1438 aa15.18■□□□□ 0.02
SPIDR-225ENST00000524141 BAZ1BQ9UIG0 1483 aaKnown RBP15.18■□□□□ 0.02
SPIDR-225ENST00000524141 HNRNPUL2Q1KMD3 747 aaKnown RBP15.15■□□□□ 0.02
SPIDR-225ENST00000524141 PEG3Q9GZU2 1588 aa15.14■□□□□ 0.01
SPIDR-225ENST00000524141 CLSPNQ9HAW4 1339 aa15.14■□□□□ 0.01
SPIDR-225ENST00000524141 APLP2Q06481 763 aa15.12■□□□□ 0.01
SPIDR-225ENST00000524141 SYNJ1O43426 1573 aa15.12■□□□□ 0.01
SPIDR-225ENST00000524141 RAPGEF2Q9Y4G8 1499 aa15.02■□□□□ -0
SPIDR-225ENST00000524141 DHX57Q6P158 1386 aaKnown RBP14.97□□□□□ -0.01
SPIDR-225ENST00000524141 BICRAQ9NZM4 1560 aa14.97□□□□□ -0.01
SPIDR-225ENST00000524141 ERICH3Q5RHP9 1530 aa14.96□□□□□ -0.01
SPIDR-225ENST00000524141 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
SPIDR-225ENST00000524141 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
SPIDR-225ENST00000524141 SUPT16HQ9Y5B9 1047 aaKnown RBP14.9□□□□□ -0.02
SPIDR-225ENST00000524141 BIVM-ERCC5R4GMW8 1640 aa14.9□□□□□ -0.02
SPIDR-225ENST00000524141 RRBP1Q9P2E9 1410 aaKnown RBP14.89□□□□□ -0.03
SPIDR-225ENST00000524141 CUX2O14529 1486 aa14.88□□□□□ -0.03
SPIDR-225ENST00000524141 ARAP1Q96P48 1450 aa14.87□□□□□ -0.03
SPIDR-225ENST00000524141 PRXQ9BXM0 1461 aa14.87□□□□□ -0.03
SPIDR-225ENST00000524141 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
SPIDR-225ENST00000524141 RANGAP1P46060 587 aaPredicted RBP14.83□□□□□ -0.04
SPIDR-225ENST00000524141 CCNB3Q8WWL7 1395 aa14.78□□□□□ -0.04
SPIDR-225ENST00000524141 KANK4Q5T7N3 995 aaPredicted RBP14.78□□□□□ -0.04
SPIDR-225ENST00000524141 TSHZ2Q9NRE2 1034 aa14.74□□□□□ -0.05
SPIDR-225ENST00000524141 KIF27Q86VH2 1401 aa14.74□□□□□ -0.05
SPIDR-225ENST00000524141 ARHGAP35Q9NRY4 1499 aa14.69□□□□□ -0.06
SPIDR-225ENST00000524141 MAP3K1Q13233 1512 aa14.69□□□□□ -0.06
SPIDR-225ENST00000524141 CUX1P39880 1505 aa14.68□□□□□ -0.06
SPIDR-225ENST00000524141 ANP32EQ9BTT0 268 aa14.68□□□□□ -0.06
SPIDR-225ENST00000524141 MAPKBP1O60336 1514 aa14.68□□□□□ -0.06
SPIDR-225ENST00000524141 RAB3GAP2Q9H2M9 1393 aa14.67□□□□□ -0.06
SPIDR-225ENST00000524141 HMGXB3Q12766 1538 aa14.65□□□□□ -0.06
SPIDR-225ENST00000524141 TIAM1Q13009 1591 aa14.64□□□□□ -0.07
SPIDR-225ENST00000524141 SETD5Q9C0A6 1442 aa14.62□□□□□ -0.07
SPIDR-225ENST00000524141 TIMELESSQ9UNS1 1208 aa14.61□□□□□ -0.07
SPIDR-225ENST00000524141 ITGAEP38570 1179 aa14.6□□□□□ -0.07
SPIDR-225ENST00000524141 NCAPD3P42695 1498 aa14.58□□□□□ -0.07
SPIDR-225ENST00000524141 KCNH8Q96L42 1107 aa14.57□□□□□ -0.08
SPIDR-225ENST00000524141 WDR97A6NE52 1622 aa14.57□□□□□ -0.08
SPIDR-225ENST00000524141 CFTRP13569 1480 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms